Experiment set22IT071 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17690 -6.6 -9.1 imidazole glycerol phosphate synthase compare
BPHYT_RS17680 -6.5 -3.4 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS17675 -6.4 -1.7 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS17670 -6.1 -3.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS06555 -6.0 -7.1 ketol-acid reductoisomerase compare
BPHYT_RS17685 -5.7 -6.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS33865 -5.3 -7.3 tryptophan synthase alpha chain compare
BPHYT_RS13705 -5.2 -3.0 chorismate synthase compare
BPHYT_RS15920 -5.1 -8.5 argininosuccinate synthase compare
BPHYT_RS23030 -4.9 -1.3 gluconate 2-dehydrogenase compare
BPHYT_RS06545 -4.8 -10.7 acetolactate synthase compare
BPHYT_RS32150 -4.8 -2.1 hypothetical protein compare
BPHYT_RS33835 -4.7 -8.0 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS18320 -4.7 -3.2 orotate phosphoribosyltransferase compare
BPHYT_RS33875 -4.6 -6.8 tryptophan synthase subunit alpha compare
BPHYT_RS17700 -4.6 -3.0 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS08955 -4.5 -4.1 homoserine dehydrogenase compare
BPHYT_RS17715 -4.5 -6.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS12590 -4.4 -1.9 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS16250 -4.4 -1.1 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS16270 -4.4 -2.9 phosphoglycerate kinase compare
BPHYT_RS14895 -4.3 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS14050 -4.2 -6.0 UDP pyrophosphate phosphatase compare
BPHYT_RS20880 -4.2 -1.1 polyketide cyclase compare
BPHYT_RS03150 -4.2 -11.7 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS16835 -4.2 -4.5 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS33880 -4.1 -7.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS16905 -4.1 -2.8 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS12530 -4.1 -6.9 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS14915 -4.0 -5.4 phosphoserine aminotransferase compare
BPHYT_RS17885 -4.0 -3.8 3-dehydroquinate synthase compare
BPHYT_RS33645 -4.0 -2.7 homoserine kinase compare
BPHYT_RS00980 -4.0 -1.0 GCN5 family acetyltransferase compare
BPHYT_RS06350 -4.0 -1.7 chemotaxis protein CheY compare
BPHYT_RS15915 -3.7 -11.3 ornithine carbamoyltransferase compare
BPHYT_RS06975 -3.7 -1.9 glutamate racemase compare
BPHYT_RS12615 -3.7 -1.3 dihydrodipicolinate synthase compare
BPHYT_RS12845 -3.6 -11.5 ATPase compare
BPHYT_RS11390 -3.6 -10.2 penicillin-binding protein 1A compare
BPHYT_RS06405 -3.6 -4.2 phosphoribosylamine--glycine ligase compare
BPHYT_RS14865 -3.5 -1.6 UDP-glucose 6-dehydrogenase compare
BPHYT_RS07325 -3.5 -0.9 GntR family transcriptional regulator compare
BPHYT_RS17890 -3.5 -1.5 shikimate kinase compare
BPHYT_RS17945 -3.4 -2.0 cytochrome C biogenesis protein compare
BPHYT_RS29920 -3.4 -0.9 hypothetical protein compare
BPHYT_RS33920 -3.4 -4.0 type II citrate synthase compare
BPHYT_RS25770 -3.3 -1.2 hypothetical protein compare
BPHYT_RS33840 -3.3 -5.9 amidophosphoribosyltransferase compare
BPHYT_RS03645 -3.3 -1.7 tRNA dimethylallyltransferase compare
BPHYT_RS14755 -3.3 -2.9 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS35275 -3.3 -1.2 acetyltransferase compare
BPHYT_RS28575 -3.2 -0.8 transcriptional regulator compare
BPHYT_RS02955 -3.2 -8.1 formyltetrahydrofolate deformylase compare
BPHYT_RS07130 -3.2 -1.4 biopolymer transporter ExbD compare
BPHYT_RS02690 -3.2 -7.0 protoheme IX farnesyltransferase compare
BPHYT_RS22190 -3.1 -2.3 nucleoid-structuring protein H-NS compare
BPHYT_RS34430 -3.1 -1.4 2-keto-4-pentenoate hydratase compare
BPHYT_RS36385 -3.1 -0.8 TetR family transcriptional regulator compare
BPHYT_RS02590 -3.1 -7.2 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS12925 -3.0 -1.1 exodeoxyribonuclease III compare
BPHYT_RS18255 -3.0 -2.2 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS18705 -3.0 -1.3 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS15620 -3.0 -3.1 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS02525 -3.0 -7.0 membrane protein compare
BPHYT_RS08340 -3.0 -0.7 chemotaxis protein CheY compare
BPHYT_RS12725 -2.9 -10.8 regulator compare
BPHYT_RS27175 -2.9 -1.0 DNA-binding protein compare
BPHYT_RS01595 -2.9 -7.7 homoserine O-acetyltransferase compare
BPHYT_RS03280 -2.8 -1.0 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS33580 -2.8 -3.1 geranyltranstransferase compare
BPHYT_RS02860 -2.7 -0.7 membrane protein compare
BPHYT_RS14400 -2.7 -2.2 anti-sigma factor compare
BPHYT_RS04890 -2.7 -0.9 cobalamin biosynthesis protein CobD compare
BPHYT_RS04080 -2.7 -4.0 chloride channel protein compare
BPHYT_RS09315 -2.7 -0.7 chemotaxis protein CheY compare
BPHYT_RS34780 -2.6 -4.0 phytoene synthase compare
BPHYT_RS12055 -2.6 -11.8 phosphoenolpyruvate synthase compare
BPHYT_RS16735 -2.6 -5.0 phosphogluconate dehydratase compare
BPHYT_RS20025 -2.5 -2.0 crotonase compare
BPHYT_RS28075 -2.5 -1.1 cytochrome B561 compare
BPHYT_RS26685 -2.5 -0.9 precorrin-8X methylmutase compare
BPHYT_RS20505 -2.5 -1.1 carboxymethylenebutenolidase compare
BPHYT_RS30490 -2.5 -1.1 2-haloalkanoic acid dehalogenase compare
BPHYT_RS02155 -2.4 -4.3 dithiobiotin synthetase compare
BPHYT_RS04335 -2.4 -1.4 membrane protein compare
BPHYT_RS12280 -2.4 -0.8 RNA helicase compare
BPHYT_RS17390 -2.3 -11.1 anthranilate synthase subunit I compare
BPHYT_RS03655 -2.3 -1.6 membrane protein compare
BPHYT_RS12840 -2.3 -3.3 pyruvate dehydrogenase compare
BPHYT_RS16345 -2.3 -2.6 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS11555 -2.3 -2.3 allantoinase compare
BPHYT_RS06155 -2.3 -4.5 DEAD/DEAH box helicase compare
BPHYT_RS16710 -2.2 -0.5 LysR family transcriptional regulator compare
BPHYT_RS03535 -2.2 -4.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS10215 -2.2 -1.3 sulfate transporter compare
BPHYT_RS02665 -2.2 -9.8 MFS transporter compare
BPHYT_RS17400 -2.2 -4.3 anthranilate phosphoribosyltransferase compare
BPHYT_RS14190 -2.2 -1.5 carbamoyl phosphate synthase large subunit compare
BPHYT_RS26435 -2.2 -1.5 hypothetical protein compare
BPHYT_RS35310 -2.2 -1.5 GCN5 family N-acetyltransferase compare
BPHYT_RS07050 -2.1 -1.1 membrane protein compare
BPHYT_RS02300 -2.1 -1.3 acid shock protein compare
BPHYT_RS12465 -2.1 -1.0 inositol monophosphatase compare
BPHYT_RS23230 -2.1 -0.8 histidine kinase compare
BPHYT_RS06075 -2.1 -4.8 hypothetical protein compare
BPHYT_RS03410 -2.1 -1.4 queuine tRNA-ribosyltransferase compare
BPHYT_RS05490 -2.1 -4.7 porin compare
BPHYT_RS33915 -2.1 -4.1 isopropylmalate isomerase compare
BPHYT_RS01455 -2.1 -0.5 peptide deformylase compare
BPHYT_RS17520 -2.1 -3.4 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS30040 -2.1 -1.1 hypothetical protein compare
BPHYT_RS26310 -2.0 -2.0 ribonuclease R compare
BPHYT_RS18610 -2.0 -5.8 lytic transglycosylase compare
BPHYT_RS05035 -2.0 -3.8 sugar ABC transporter permease compare
BPHYT_RS06610 -2.0 -0.9 triosephosphate isomerase compare
BPHYT_RS35770 -2.0 -0.7 glyoxalase compare
BPHYT_RS20900 -2.0 -2.1 phytanoyl-CoA dioxygenase compare
BPHYT_RS06530 -2.0 -1.8 membrane protein compare
BPHYT_RS06685 -2.0 -1.0 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS17095 -2.0 -1.9 proline--tRNA ligase compare
BPHYT_RS25870 -2.0 -0.8 type III secretion system ATPase compare
BPHYT_RS01505 -1.9 -2.0 7-cyano-7-deazaguanine reductase compare
BPHYT_RS02010 -1.9 -1.7 copper homeostasis protein CutC compare
BPHYT_RS02765 -1.9 -0.8 cytochrome BD oxidase subunit I compare
BPHYT_RS32260 -1.9 -0.9 hypothetical protein compare
BPHYT_RS11635 -1.9 -1.0 RNA polymerase subunit sigma-24 compare
BPHYT_RS09500 -1.9 -3.0 glucose-6-phosphate isomerase compare
BPHYT_RS11960 -1.9 -0.9 MarR family transcriptional regulator compare
BPHYT_RS35885 -1.9 -3.0 hypothetical protein compare
BPHYT_RS10065 -1.9 -1.2 cytochrome C oxidase subunit I compare
BPHYT_RS13450 -1.9 -1.3 GntR family transcriptional regulator compare
BPHYT_RS33900 -1.8 -5.1 3-isopropylmalate dehydrogenase compare
BPHYT_RS17855 -1.8 -8.3 glutamate synthase compare
BPHYT_RS13605 -1.8 -0.8 tRNA-Pro compare
BPHYT_RS05650 -1.8 -1.1 hypothetical protein compare
BPHYT_RS21495 -1.8 -0.9 ABC transporter compare
BPHYT_RS18590 -1.8 -0.6 hypothetical protein compare
BPHYT_RS25815 -1.8 -1.4 deoxyribose-phosphate aldolase compare
BPHYT_RS02685 -1.8 -5.6 cytochrome C oxidase subunit I compare
BPHYT_RS28905 -1.8 -1.3 alpha-dehydro-beta-deoxy-D-glucarate aldolase compare
BPHYT_RS16840 -1.7 -1.2 transketolase compare
BPHYT_RS02640 -1.7 -8.9 cytochrome C oxidase compare
BPHYT_RS12150 -1.7 -9.5 PII uridylyl-transferase compare
BPHYT_RS16430 -1.7 -10.0 cytochrome C compare
BPHYT_RS13245 -1.7 -3.1 hypothetical protein compare
BPHYT_RS36055 -1.7 -1.9 hypothetical protein compare
BPHYT_RS17265 -1.7 -0.9 cell division protein compare
BPHYT_RS15415 -1.7 -7.4 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS06900 -1.7 -2.7 aspartate aminotransferase compare
BPHYT_RS06195 -1.7 -1.7 membrane protein compare
BPHYT_RS22420 -1.7 -0.8 membrane protein compare
BPHYT_RS16090 -1.7 -0.9 hypothetical protein compare
BPHYT_RS17405 -1.7 -0.9 indole-3-glycerol phosphate synthase compare
BPHYT_RS21035 -1.7 -2.7 ABC transporter permease compare
BPHYT_RS09585 -1.7 -1.3 hypothetical protein compare
BPHYT_RS19660 -1.7 -1.4 hypothetical protein compare
BPHYT_RS09145 -1.7 -8.2 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS18250 -1.6 -4.6 phenylacetate-CoA oxygenase subunit PaaA compare
BPHYT_RS01500 -1.6 -7.5 7-cyano-7-deazaguanine synthase compare
BPHYT_RS36460 -1.6 -2.4 hypothetical protein compare
BPHYT_RS06070 -1.6 -6.3 cytochrome C compare
BPHYT_RS08125 -1.6 -5.3 ATPase compare
BPHYT_RS30065 -1.6 -1.7 shikimate dehydrogenase compare
BPHYT_RS03135 -1.6 -4.5 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
BPHYT_RS26775 -1.6 -1.2 chemotaxis protein CheB compare
BPHYT_RS21025 -1.6 -0.8 cation-binding protein compare
BPHYT_RS14105 -1.5 -8.4 exopolyphosphatase compare
BPHYT_RS03400 -1.5 -0.5 ATP-dependent DNA helicase RecG compare
BPHYT_RS14270 -1.5 -4.3 electron transporter compare
BPHYT_RS05010 -1.5 -2.1 RpiR family transcriptional regulator compare
BPHYT_RS04865 -1.5 -2.9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
BPHYT_RS17765 -1.5 -3.3 toluene ABC transporter ATP-binding protein compare
BPHYT_RS03570 -1.5 -3.9 heat-inducible transcription repressor HrcA compare
BPHYT_RS18260 -1.5 -4.0 phenylacetic acid degradation protein compare
BPHYT_RS26490 -1.5 -0.8 hypothetical protein compare
BPHYT_RS19435 -1.5 -2.4 16S rRNA methyltransferase compare
BPHYT_RS08245 -1.5 -3.7 anti-sigma factor compare
BPHYT_RS15305 -1.5 -4.6 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS02975 -1.5 -1.0 membrane protein compare
BPHYT_RS11050 -1.5 -1.1 molecular chaperone compare
BPHYT_RS26200 -1.5 -1.7 acetate kinase compare
BPHYT_RS06065 -1.5 -6.3 cytochrome C compare
BPHYT_RS13885 -1.5 -1.2 myo-inositol 2-dehydrogenase compare
BPHYT_RS30365 -1.5 -0.6 beta-lactamase compare
BPHYT_RS02695 -1.5 -3.5 photosynthetic protein synthase I compare
BPHYT_RS04720 -1.5 -5.0 transcriptional regulator compare
BPHYT_RS20095 -1.5 -0.7 transcriptional regulator compare
BPHYT_RS05905 -1.5 -0.9 hypothetical protein compare
BPHYT_RS25135 -1.5 -1.4 hypothetical protein compare
BPHYT_RS25515 -1.4 -1.6 glutathione S-transferase compare
BPHYT_RS02540 -1.4 -0.9 hypothetical protein compare
BPHYT_RS16435 -1.4 -7.0 alcohol dehydrogenase compare
BPHYT_RS02900 -1.4 -2.4 ribosome hibernation promoting factor compare
BPHYT_RS01510 -1.4 -4.0 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
BPHYT_RS06990 -1.4 -1.0 membrane protein compare
BPHYT_RS25220 -1.4 -2.4 ferredoxin oxidoreductase compare
BPHYT_RS06045 -1.4 -3.9 transaldolase compare
BPHYT_RS18600 -1.4 -1.0 glutathione S-transferase compare
BPHYT_RS03925 -1.4 -2.1 LysR family transcriptional regulator compare
BPHYT_RS11970 -1.4 -1.1 cupin compare


Specific Phenotypes

For 4 genes in this experiment

For in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days across organisms