Experiment set22IT053 for Pseudomonas putida KT2440

Compare to:

Growth with Sodium Chloride 500 mM

200 most important genes:

  gene name fitness t score description  
PP_4994 -7.4 -5.1 conserved protein of unknown function compare
PP_4943 -5.1 -3.5 putative Glycosyl transferase compare
PP_1986 -5.1 -4.9 3-isopropylmalate dehydratase small subunit compare
PP_4099 -5.0 -43.2 two-componenent system BarA/UvrY - regulatory subunit compare
PP_2371 -4.9 -8.8 Sulphite reductase hemoprotein, beta subunit compare
PP_1650 -4.7 -23.9 Sensor protein GacS compare
PP_2327 -4.6 -7.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1995 -4.6 -10.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2348 -4.5 -7.2 Sensor histidine kinase compare
PP_5015 -4.5 -6.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0422 -4.4 -6.8 Indole-3-glycerol phosphate synthase compare
PP_4890 -4.3 -6.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_5185 -4.3 -8.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5014 -4.2 -4.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_0846 -4.2 -2.3 DnaK-like molecular chaperone specific for IscU compare
PP_1985 -4.1 -6.0 3-isopropylmalate dehydratase large subunit compare
PP_3417 -4.1 -6.7 D-gluconate transporter compare
PP_0082 -3.8 -8.5 tryptophan synthase alpha chain compare
PP_0293 -3.8 -2.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3999 -3.7 -7.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4785 -3.7 -5.1 conserved exported protein of unknown function compare
PP_5289 -3.6 -4.8 Acetylglutamate kinase compare
PP_1233 -3.6 -5.4 sulfurtransferase compare
PP_2328 -3.6 -7.6 Phosphoadenosine phosphosulfate reductase compare
PP_1988 -3.5 -11.5 3-isopropylmalate dehydrogenase compare
PP_0967 -3.5 -9.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1088 -3.5 -12.0 Argininosuccinate synthase compare
PP_5347 -3.3 -10.8 pyruvate carboxylase subunit A compare
PP_4902 -3.3 -3.9 Oligoribonuclease compare
PP_0184 -3.3 -7.9 Argininosuccinate lyase compare
PP_4696 -3.3 -6.5 Nitrogen regulation protein NR(I) compare
PP_2136 -3.2 -6.8 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4678 -3.2 -13.7 Ketol-acid reductoisomerase compare
PP_2370 -3.2 -3.3 conserved protein of unknown function compare
PP_4828 -3.1 -2.1 Precorrin-8X methylmutase compare
PP_5098 -3.1 -7.7 methionine biosynthesis protein MetW compare
PP_0083 -3.1 -7.4 tryptophan synthase beta chain compare
PP_0292 -3.1 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4680 -3.0 -13.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5500 -3.0 -2.6 protein of unknown function compare
PP_2302 -3.0 -7.1 DNA-binding, ATP-dependent protease compare
PP_5097 -3.0 -13.7 homoserine O-acetyltransferase compare
PP_5350 -3.0 -5.3 Transcriptional regulator, RpiR family compare
PP_3511 -3.0 -6.6 Branched-chain-amino-acid aminotransferase compare
PP_4699 -2.9 -5.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0966 -2.9 -9.3 Histidinol dehydrogenase compare
PP_2433 -2.9 -3.2 conserved protein of unknown function compare
PP_4519 -2.8 -13.3 Agglutination protein compare
PP_5346 -2.8 -7.6 pyruvate carboxylase subunit B compare
PP_0417 -2.8 -14.0 Anthranilate synthase component 1 compare
PP_2168 -2.8 -9.9 Transaldolase compare
PP_1444 -2.8 -10.9 quinoprotein glucose dehydrogenase compare
PP_0421 -2.8 -6.9 Anthranilate phosphoribosyltransferase compare
PP_2001 -2.8 -7.5 O-succinylhomoserine sulfhydrylase compare
PP_0366 -2.8 -6.0 dethiobiotin synthetase compare
PP_0888 -2.8 -3.2 Photosynthetic apparatus regulatory protein RegA compare
PP_5128 -2.8 -7.9 Dihydroxy-acid dehydratase compare
PP_0363 -2.8 -11.7 8-amino-7-oxononanoate synthase compare
PP_4984 -2.8 -10.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0289 -2.7 -7.2 Imidazoleglycerol-phosphate dehydratase compare
PP_0165 -2.7 -14.6 GGDEF domain protein compare
PP_0362 -2.7 -9.3 Biotin synthase compare
PP_0168 -2.6 -19.4 putative surface adhesion protein compare
PP_1079 -2.6 -7.0 Ornithine carbamoyltransferase compare
PP_1231 -2.6 -7.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4700 -2.6 -1.8 pantothenate synthetase compare
PP_5104 -2.6 -8.6 thiazole synthase compare
PP_0167 -2.6 -16.0 Toxin secretion ATP-binding protein compare
PP_4782 -2.6 -4.1 Phosphomethylpyrimidine kinase compare
PP_4471 -2.6 -5.9 Magnesium transporter compare
PP_0290 -2.5 -7.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2052 -2.5 -9.5 putative bifunctional enzyme: sugar-phosphatase/mannitol-1-phosphate 5-dehydrogenase compare
PP_0127 -2.5 -4.7 Thiol:disulfide interchange protein compare
PP_4922 -2.5 -10.3 Phosphomethylpyrimidine synthase compare
PP_0965 -2.5 -8.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0166 -2.5 -14.1 HlyD family secretion protein compare
PP_0420 -2.5 -9.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5348 -2.4 -8.6 Transcriptional regulator, LysR family compare
PP_0368 -2.4 -12.3 putative Acyl-CoA dehydrogenase compare
PP_3312 -2.4 -1.9 putative Heat shock protein compare
PP_0378 -2.4 -6.5 Pyrroloquinoline-quinone synthase compare
PP_4679 -2.3 -6.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1022 -2.3 -6.0 glucose 6-phosphate-1-dehydrogenase compare
PP_0364 -2.3 -6.8 pimeloyl-[acp] methyl ester esterase compare
PP_4909 -2.2 -6.5 phosphoserine phosphatase compare
PP_4058 -2.2 -7.8 1,4-alpha-glucan branching enzyme compare
PP_5303 -2.2 -5.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0787 -2.2 -3.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1734 -2.1 -4.8 Probable septum site-determining protein MinC compare
PP_0547 -2.1 -7.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0365 -2.1 -8.4 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2137 -2.1 -4.2 beta-ketoadipyl CoA thiolase, beta component compare
PP_4895 -2.1 -1.5 tRNA dimethylallyltransferase compare
PP_0379 -2.1 -6.0 Coenzyme PQQ synthesis protein B compare
PP_3603 -2.1 -6.8 Transcriptional regulator, GntR family compare
PP_4004 -2.1 -3.7 DNA translocase FtsK compare
PP_1778 -2.1 -9.0 Lipopolysaccharide ABC export system, permease protein compare
PP_0381 -2.0 -5.1 Coenzyme PQQ synthesis protein F compare
PP_1912 -2.0 -4.5 Phosphate acyltransferase compare
PP_0435 -2.0 -7.9 Peptidase, M23/M37 family compare
PP_0376 -2.0 -7.6 Coenzyme PQQ synthesis protein E compare
PP_1025 -2.0 -7.1 2-isopropylmalate synthase compare
PP_5232 -1.9 -2.3 conserved protein of unknown function compare
PP_1733 -1.9 -3.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_2714 -1.9 -4.8 Sensor histidine kinase compare
PP_2313 -1.9 -2.7 conserved membrane protein of unknown function compare
PP_1348 -1.9 -5.7 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_5017 -1.9 -1.3 Sec-independent protein translocase protein TatB compare
PP_1099 -1.9 -2.8 Cold shock protein CapB compare
PP_0735 -1.8 -1.5 molybdopterin-synthase adenylyltransferase compare
PP_5075 -1.7 -8.1 glutamate synthase (NADPH) beta subunit compare
PP_5114 -1.7 -1.6 putative adenine methyltransferase compare
PP_1428 -1.7 -1.6 Sigma factor AlgU negative regulatory protein compare
PP_5328 -1.7 -2.3 putative phosphate transport system permease protein compare
PP_4340 -1.7 -2.4 response regulator for chemotactic signal transduction compare
PP_1623 -1.7 -5.6 RNA polymerase, sigma S (sigma 38) factor compare
PP_2878 -1.7 -2.6 conserved protein of unknown function compare
PP_1898 -1.6 -2.1 MotA/TolQ/ExbB proton channel family protein compare
PP_4131 -1.6 -5.5 NADH-quinone oxidoreductase subunit N compare
PP_5155 -1.6 -3.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2681 -1.6 -2.3 coenzyme PQQ synthesis protein D compare
PP_5035 -1.6 -6.5 Histidine utilization repressor compare
PP_1679 -1.6 -2.0 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4695 -1.6 -7.4 Sensory box histidine kinase compare
PP_5327 -1.6 -4.3 putative phosphate ABC transporter, permease subunit compare
PP_2898 -1.5 -3.0 conserved exported protein of unknown function compare
PP_2932 -1.5 -5.0 Amidase family protein compare
PP_4993 -1.5 -3.9 Glutathione synthetase compare
PP_4373 -1.5 -7.9 Transcriptional regulator FleQ compare
PP_4797 -1.5 -2.2 conserved protein of unknown function compare
PP_4054 -1.5 -2.6 conserved protein of unknown function compare
PP_4332 -1.5 -4.6 Chemotaxis protein CheW compare
PP_0377 -1.4 -1.2 coenzyme PQQ synthesis protein D compare
PP_1362 -1.4 -3.7 pyruvate kinase II compare
PP_0809 -1.4 -6.1 disulfide bond formation protein B compare
PP_4529 -1.4 -4.5 conserved protein of unknown function compare
PP_5320 -1.4 -4.9 two-component system DNA-binding transcriptional dual response regulator PhoB compare
PP_2203 -1.4 -1.2 conserved protein of unknown function compare
PP_5008 -1.4 -1.6 Poly granule-associated protein compare
PP_4129 -1.4 -3.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2820 -1.4 -1.3 HTH-type transcriptional regulator nfxB compare
PP_3649 -1.4 -3.1 Transcriptional regulator, GntR family compare
PP_2335 -1.4 -4.9 methylcitrate synthase compare
PP_0291 -1.4 -2.1 conserved protein of unknown function compare
PP_1124 -1.4 -2.1 conserved membrane protein of unknown function compare
PP_2414 -1.3 -1.3 conserved exported protein of unknown function compare
PP_0406 -1.3 -1.9 Nucleotidyltransferase family protein compare
PP_4387 -1.3 -3.5 conserved exported protein of unknown function compare
PP_1779 -1.3 -5.3 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4880 -1.3 -6.8 exoribonuclease R compare
PP_1309 -1.3 -4.2 conserved exported protein of unknown function compare
PP_4964 -1.3 -2.7 D-erythrose 4-phosphate dehydrogenase compare
PP_0612 -1.3 -6.4 FAD-dependent glycine/D-amino acid oxidase compare
PP_1656 -1.3 -4.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_5507 -1.3 -2.7 protein of unknown function compare
PP_1304 -1.3 -6.0 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_3880 -1.3 -1.5 conserved exported protein of unknown function compare
PP_4560 -1.3 -2.6 putative Ribonuclease BN compare
PP_5429 -1.3 -4.1 protein of unknown function compare
PP_5076 -1.3 -8.7 L-glutamate synthase(NADPH) alpha subunit compare
PP_0138 -1.3 -5.8 conserved membrane protein of unknown function compare
PP_1303 -1.3 -4.9 Sulfate adenylyltransferase subunit 2 compare
PP_2844 -1.3 -3.2 Urease subunit beta compare
PP_4304 -1.3 -5.8 Cation transporter, VIC family conserved
PP_4338 -1.3 -5.5 Chemotaxis histidine kinase CheA compare
PP_1344 -1.2 -1.3 conserved protein of unknown function compare
PP_0673 -1.2 -1.4 conserved protein of unknown function compare
PP_1676 -1.2 -4.2 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_2402 -1.2 -2.3 putative Sensor histidine kinase compare
PP_4121 -1.2 -4.1 NADH-quinone oxidoreductase subunit C/D compare
PP_5217 -1.2 -5.0 Polyphosphate kinase compare
PP_3328 -1.2 -2.2 putative Ring-cleaving dioxygenase compare
PP_2908 -1.2 -4.9 DNA-binding transcriptional repressor compare
PP_0345 -1.2 -2.4 putative Heptose kinase WapP compare
PP_1876 -1.2 -2.4 putative ATP/GTP-binding protein of the AAA+ family compare
PP_4122 -1.2 -1.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5508 -1.2 -1.2 conserved protein of unknown function compare
PP_5331 -1.2 -2.3 Long-chain acyl-CoA thioester hydrolase compare
PP_2750 -1.2 -2.7 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_2222 -1.2 -3.1 conserved protein of unknown function compare
PP_4124 -1.2 -3.6 NADH-quinone oxidoreductase subunit G compare
PP_3821 -1.1 -4.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0007 -1.1 -1.9 conserved hypothetical protein compare
PP_1062 -1.1 -1.8 MutT/nudix family protein compare
PP_0789 -1.1 -2.3 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4362 -1.1 -2.4 conserved protein of unknown function compare
PP_0649 -1.1 -3.2 MutT/nudix family protein compare
PP_2307 -1.1 -0.7 conserved protein of unknown function compare
PP_0914 -1.1 -5.1 GGDEF domain protein compare
PP_1678 -1.1 -2.0 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1702 -1.1 -3.3 Recombination-associated protein RdgC compare
PP_4320 -1.1 -2.3 cytochrome c-type biogenesis protein compare
PP_4355 -1.1 -1.9 flagellar export apparatus subunit compare
PP_4370 -1.0 -2.2 Flagellar hook-basal body complex protein FliE compare
PP_0380 -1.0 -3.0 Coenzyme PQQ synthesis protein A compare
PP_2650 -1.0 -2.1 putative 4-hydroxybutyrate dehydrogenase compare
PP_1491 -1.0 -2.5 CheW domain protein compare
PP_0407 -1.0 -3.0 DnaJ-like protein DjlA compare
PP_3614 -1.0 -1.9 conserved membrane protein of unknown function compare
PP_0948 -1.0 -1.3 Phosphocarrier protein HPr compare


Specific Phenotypes

For 6 genes in this experiment

For stress D-Glucose in Pseudomonas putida KT2440

For stress D-Glucose across organisms