Experiment set21IT037 for Pseudomonas fluorescens SBW25-INTG

Compare to:

D-Glucose 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS20575 -5.5 -3.8 3-isopropylmalate dehydratase small subunit compare
PFLU_RS28695 -5.5 -8.3 phosphoglycerate dehydrogenase compare
PFLU_RS28390 -5.3 -9.5 methionine biosynthesis protein MetW compare
PFLU_RS27365 -5.1 -9.2 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS28535 -5.1 -15.0 dihydroxy-acid dehydratase compare
PFLU_RS28385 -4.9 -13.9 homoserine O-acetyltransferase compare
PFLU_RS02490 -4.9 -14.0 phosphoserine phosphatase SerB compare
PFLU_RS20565 -4.8 -10.2 3-isopropylmalate dehydrogenase compare
PFLU_RS03970 -4.7 -11.8 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS25640 -4.7 -11.8 ketol-acid reductoisomerase compare
PFLU_RS20580 -4.7 -9.5 3-isopropylmalate dehydratase large subunit compare
PFLU_RS27370 -4.6 -12.6 anthranilate phosphoribosyltransferase compare
PFLU_RS02590 -4.6 -8.7 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS00180 -4.5 -4.4 tryptophan synthase subunit beta compare
PFLU_RS29875 -4.5 -21.6 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS20510 -4.5 -12.0 O-succinylhomoserine sulfhydrylase compare
PFLU_RS01620 -4.5 -8.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS01610 -4.5 -11.2 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS01605 -4.5 -7.4 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS24765 -4.5 -22.4 2-isopropylmalate synthase compare
PFLU_RS28165 -4.4 -8.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS25360 -4.3 -9.2 glutamate 5-kinase compare
PFLU_RS29885 -4.3 -16.0 LysR family transcriptional regulator compare
PFLU_RS29880 -4.3 -19.6 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS04470 -4.2 -12.6 histidinol dehydrogenase compare
PFLU_RS28655 -4.2 -12.0 HAD family hydrolase compare
PFLU_RS24025 -4.1 -12.7 quinolinate synthase NadA compare
PFLU_RS04465 -4.1 -10.9 ATP phosphoribosyltransferase compare
PFLU_RS00175 -4.0 -5.5 tryptophan synthase subunit alpha compare
PFLU_RS20540 -4.0 -10.3 phosphoribosylanthranilate isomerase compare
PFLU_RS01625 -4.0 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS01900 -4.0 -8.4 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS01895 -3.9 -8.9 phosphoribosyl-ATP diphosphatase compare
PFLU_RS25645 -3.8 -2.6 acetolactate synthase small subunit compare
PFLU_RS23065 -3.8 -12.7 phosphate acyltransferase PlsX compare
PFLU_RS23585 -3.7 -11.3 GntP family permease compare
PFLU_RS29515 -3.7 -15.1 RidA family protein compare
PFLU_RS27650 -3.7 -19.3 biotin synthase BioB compare
PFLU_RS12980 -3.6 -9.1 nitrite/sulfite reductase compare
PFLU_RS22070 -3.5 -4.7 phosphoribosylglycinamide formyltransferase compare
PFLU_RS18505 -3.5 -5.8 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS07225 -3.4 -19.3 L-aspartate oxidase compare
PFLU_RS23070 -3.4 -2.3 50S ribosomal protein L32 compare
PFLU_RS10765 -3.4 -17.6 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS23305 -3.2 -11.3 arginine N-succinyltransferase compare
PFLU_RS23590 -3.2 -3.9 gluconokinase compare
PFLU_RS20515 -3.2 -5.7 amidophosphoribosyltransferase compare
PFLU_RS29095 -3.2 -25.0 polyphosphate kinase 1 compare
PFLU_RS02275 -3.2 -2.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS27630 -3.2 -8.7 dethiobiotin synthase compare
PFLU_RS28195 -3.1 -19.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS23310 -3.1 -9.5 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS27635 -3.1 -13.4 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS18410 -3.1 -9.1 response regulator compare
PFLU_RS19015 -3.1 -16.4 anti-sigma factor compare
PFLU_RS25940 -3.0 -26.4 FCD domain-containing protein compare
PFLU_RS12975 -3.0 -5.0 DUF934 domain-containing protein compare
PFLU_RS28965 -3.0 -12.7 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS27645 -2.9 -17.0 8-amino-7-oxononanoate synthase compare
PFLU_RS25735 -2.8 -4.6 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS25750 -2.7 -5.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS08670 -2.6 -6.8 heme lyase CcmF/NrfE family subunit compare
PFLU_RS23725 -2.6 -5.5 glucose-6-phosphate dehydrogenase compare
PFLU_RS08665 -2.5 -5.4 cytochrome c maturation protein CcmE compare
PFLU_RS03770 -2.4 -14.7 sulfate adenylyltransferase subunit CysN compare
PFLU_RS03765 -2.4 -12.9 sulfate adenylyltransferase subunit CysD compare
PFLU_RS22105 -2.4 -4.7 cysteine synthase CysM compare
PFLU_RS09055 -2.4 -2.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS22740 -2.4 -4.7 phosphoadenylyl-sulfate reductase compare
PFLU_RS24330 -2.3 -3.2 phosphogluconate dehydratase compare
PFLU_RS23235 -2.3 -3.9 Arc family DNA-binding protein compare
PFLU_RS25755 -2.3 -1.6 pantoate--beta-alanine ligase compare
PFLU_RS03240 -2.3 -13.6 copper-translocating P-type ATPase compare
PFLU_RS02050 -2.2 -16.7 NAD(P)-binding protein compare
PFLU_RS24335 -2.2 -14.3 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS27640 -2.2 -2.7 alpha/beta fold hydrolase compare
PFLU_RS25760 -2.2 -3.6 glucose-6-phosphate isomerase compare
PFLU_RS08655 -2.1 -3.2 heme ABC transporter permease compare
PFLU_RS08660 -2.1 -2.4 heme exporter protein CcmD compare
PFLU_RS06055 -2.1 -2.8 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS00415 -2.1 -2.0 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS20660 -2.1 -12.7 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS01910 -2.0 -2.3 sterol-binding protein compare
PFLU_RS28420 -2.0 -9.5 thiazole synthase compare
PFLU_RS08675 -2.0 -3.4 DsbE family thiol:disulfide interchange protein compare
PFLU_RS26530 -2.0 -12.4 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS22600 -2.0 -3.5 RNA polymerase sigma factor SigX compare
PFLU_RS03665 -1.9 -6.7 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS13540 -1.9 -2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS25225 -1.8 -7.8 disulfide bond formation protein B compare
PFLU_RS02045 -1.8 -15.9 glutamate synthase large subunit compare
PFLU_RS02430 -1.8 -12.8 phosphomethylpyrimidine synthase ThiC compare
PFLU_RS04140 -1.6 -2.8 response regulator transcription factor compare
PFLU_RS24205 -1.6 -2.4 DNA binding protein compare
PFLU_RS31425 -1.6 -3.2 hypothetical protein compare
PFLU_RS27380 -1.6 -8.1 anthranilate synthase component I compare
PFLU_RS05690 -1.6 -1.8 Grx4 family monothiol glutaredoxin compare
PFLU_RS26535 -1.6 -7.2 thiamine phosphate synthase compare
PFLU_RS28645 -1.6 -11.0 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS15910 -1.5 -2.3 homoprotocatechuate degradation operon regulator HpaR compare
PFLU_RS08410 -1.5 -6.0 HTH-type transcriptional regulator CysB compare
PFLU_RS25815 -1.5 -2.7 transcription termination/antitermination protein NusA compare
PFLU_RS27375 -1.5 -3.9 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS24255 -1.4 -8.3 pyruvate kinase compare
PFLU_RS30160 -1.4 -2.6 ParB/RepB/Spo0J family partition protein compare
PFLU_RS13035 -1.4 -3.4 cobalamin biosynthesis protein CobW compare
PFLU_RS07255 -1.4 -4.7 sulfurtransferase TusA family protein compare
PFLU_RS07665 -1.4 -2.0 type I DNA topoisomerase compare
PFLU_RS08165 -1.4 -1.8 acyl carrier protein compare
PFLU_RS01615 -1.4 -3.1 DUF2164 domain-containing protein compare
PFLU_RS24090 -1.4 -2.3 Holliday junction branch migration protein RuvA compare
PFLU_RS25585 -1.3 -1.2 exodeoxyribonuclease V subunit alpha compare
PFLU_RS27475 -1.3 -6.7 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS07725 -1.3 -2.7 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS02625 -1.2 -8.6 ribonuclease R compare
PFLU_RS18755 -1.2 -6.9 TetR/AcrR family transcriptional regulator compare
PFLU_RS21740 -1.2 -4.9 Hpt domain-containing protein compare
PFLU_RS22835 -1.2 -6.8 amidotransferase compare
PFLU_RS14320 -1.2 -2.7 DUF2946 domain-containing protein compare
PFLU_RS29890 -1.2 -6.0 transcriptional regulator HexR compare
PFLU_RS24095 -1.1 -1.6 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS28320 -1.1 -1.5 glutathione synthase compare
PFLU_RS04220 -1.1 -6.5 FadR family transcriptional regulator compare
PFLU_RS10430 -1.1 -3.6 peptidase compare
PFLU_RS02975 -1.1 -6.1 precorrin-3B synthase compare
PFLU_RS30790 -1.1 -2.2 hypothetical protein compare
PFLU_RS27445 -1.1 -9.5 phosphotransferase compare
PFLU_RS08505 -1.1 -5.7 protease HtpX compare
PFLU_RS25210 -1.1 -3.7 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS18395 -1.1 -1.8 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS25215 -1.1 -6.1 cytochrome o ubiquinol oxidase subunit I compare
PFLU_RS09670 -1.1 -2.8 integrating conjugative element protein compare
PFLU_RS22075 -1.1 -7.0 DUF3108 domain-containing protein compare
PFLU_RS14715 -1.0 -6.8 protein-glutamate O-methyltransferase CheR compare
PFLU_RS24125 -1.0 -1.9 cold-shock protein compare
PFLU_RS07910 -1.0 -2.2 type 1 fimbrial protein compare
PFLU_RS24325 -1.0 -7.5 glucokinase compare
PFLU_RS21770 -1.0 -6.3 flagellar motor switch protein FliG compare
PFLU_RS25200 -1.0 -5.0 protoheme IX farnesyltransferase compare
PFLU_RS29755 -1.0 -7.6 phosphate ABC transporter ATP-binding protein compare
PFLU_RS27440 -1.0 -5.2 nucleotidyltransferase family protein compare
PFLU_RS14805 -1.0 -1.5 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS24475 -1.0 -9.2 AmpG family muropeptide MFS transporter compare
PFLU_RS08535 -1.0 -7.4 response regulator compare
PFLU_RS22735 -1.0 -6.7 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH compare
PFLU_RS02565 -1.0 -3.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS29780 -1.0 -5.3 acyl-CoA thioesterase compare
PFLU_RS25740 -1.0 -3.6 polynucleotide adenylyltransferase PcnB compare
PFLU_RS21240 -1.0 -2.0 hypothetical protein compare
PFLU_RS27465 -1.0 -3.0 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS13015 -1.0 -4.0 precorrin-4 C(11)-methyltransferase compare
PFLU_RS30165 -1.0 -5.1 ParA family protein compare
PFLU_RS06855 -1.0 -2.2 helix-turn-helix transcriptional regulator compare
PFLU_RS04070 -1.0 -1.6 peptide chain release factor 3 compare
PFLU_RS18530 -1.0 -3.0 DNA translocase FtsK compare
PFLU_RS24305 -1.0 -2.6 antibiotic biosynthesis monooxygenase compare
PFLU_RS21645 -1.0 -6.4 chemotaxis protein CheA compare
PFLU_RS27305 -1.0 -5.8 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS31785 -1.0 -3.0 hypothetical protein compare
PFLU_RS01875 -0.9 -1.1 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS07275 -0.9 -1.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS28665 -0.9 -7.7 threonine ammonia-lyase, biosynthetic compare
PFLU_RS25220 -0.9 -4.9 ubiquinol oxidase subunit II compare
PFLU_RS01765 -0.9 -5.9 histidine utilization repressor compare
PFLU_RS18735 -0.9 -1.5 hypothetical protein compare
PFLU_RS28315 -0.9 -1.2 response regulator compare
PFLU_RS25205 -0.9 -3.2 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS30515 -0.9 -3.5 Rieske 2Fe-2S domain-containing protein compare
PFLU_RS07695 -0.9 -2.4 beta-N-acetylhexosaminidase compare
PFLU_RS25460 -0.9 -5.8 kynureninase compare
PFLU_RS24860 -0.9 -2.4 Fe-S cluster assembly transcriptional regulator IscR compare
PFLU_RS19550 -0.9 -1.1 ABC transporter ATP-binding protein compare
PFLU_RS25730 -0.8 -6.6 PAS domain S-box protein compare
PFLU_RS19580 -0.8 -1.6 helix-turn-helix transcriptional regulator compare
PFLU_RS29480 -0.8 -6.2 exodeoxyribonuclease III compare
PFLU_RS18885 -0.8 -1.8 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS22400 -0.8 -2.8 adenine phosphoribosyltransferase compare
PFLU_RS25875 -0.8 -2.6 transcription elongation factor GreA compare
PFLU_RS26735 -0.8 -4.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS06430 -0.8 -6.6 RNA polymerase sigma factor RpoS compare
PFLU_RS02825 -0.8 -1.6 phosphate starvation-inducible protein PsiF compare
PFLU_RS21985 -0.8 -2.2 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS01315 -0.8 -1.5 Hsp33 family molecular chaperone HslO compare
PFLU_RS31590 -0.8 -0.8 hypothetical protein compare
PFLU_RS08105 -0.8 -5.0 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS28690 -0.8 -6.0 FAD-binding oxidoreductase compare
PFLU_RS21530 -0.8 -6.7 transporter substrate-binding domain-containing protein compare
PFLU_RS08650 -0.8 -1.1 heme exporter protein CcmB compare
PFLU_RS21725 -0.8 -5.4 flagellar motor switch protein FliM compare
PFLU_RS15000 -0.8 -2.2 HAMP domain-containing histidine kinase compare
PFLU_RS29105 -0.8 -6.0 DedA family protein compare
PFLU_RS29310 -0.8 -0.9 accessory factor UbiK family protein compare
PFLU_RS25595 -0.8 -1.2 exodeoxyribonuclease V subunit gamma compare
PFLU_RS03585 -0.8 -2.0 hypothetical protein compare
PFLU_RS26640 -0.8 -4.4 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS16785 -0.8 -1.8 GAF domain-containing protein compare
PFLU_RS17450 -0.8 -3.6 carboxynorspermidine decarboxylase compare
PFLU_RS13760 -0.8 -1.8 hypothetical protein compare
PFLU_RS01485 -0.8 -5.9 cellulase compare
PFLU_RS10835 -0.8 -2.0 enoyl-CoA hydratase/isomerase family protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in carbon source experiments

For carbon source D-Glucose across organisms