Experiment set20IT082 for Burkholderia phytofirmans PsJN

Compare to:

R2A with Vogels_fungal_media 0.2X

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS00690 +1.7 2.0 transcriptional regulator compare
BPHYT_RS33150 +1.6 1.5 beta-lactamase compare
BPHYT_RS02865 +1.6 3.4 hypothetical protein compare
BPHYT_RS27295 +1.4 2.0 hypothetical protein compare
BPHYT_RS09465 +1.4 3.1 transcriptional regulator compare
BPHYT_RS05650 +1.3 1.5 hypothetical protein compare
BPHYT_RS26570 +1.3 1.5 5'-nucleotidase compare
BPHYT_RS08150 +1.3 1.6 membrane protein compare
BPHYT_RS21025 +1.2 1.6 cation-binding protein compare
BPHYT_RS25500 +1.2 1.5 hypothetical protein compare
BPHYT_RS15015 +1.2 1.8 ArsR family transcriptional regulator compare
BPHYT_RS16065 +1.2 1.2 LacI family transcriptional regulator compare
BPHYT_RS34030 +1.2 2.7 pilus assembly protein CpaB compare
BPHYT_RS32360 +1.2 2.2 spermidine/putrescine ABC transporter ATPase compare
BPHYT_RS23460 +1.1 1.3 AraC family transcriptional regulator compare
BPHYT_RS23910 +1.1 2.2 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS28660 +1.1 1.8 polyvinylalcohol dehydrogenase compare
BPHYT_RS05730 +1.1 2.7 hypothetical protein compare
BPHYT_RS29850 +1.1 1.8 protein tyrosine kinase compare
BPHYT_RS35165 +1.1 1.8 peptidase compare
BPHYT_RS05365 +1.1 1.5 3-ketoacyl-ACP reductase compare
BPHYT_RS33125 +1.1 1.3 hypothetical protein compare
BPHYT_RS33360 +1.1 1.9 formyl-CoA transferase compare
BPHYT_RS08130 +1.1 1.7 transposase compare
BPHYT_RS29410 +1.0 1.7 HPr kinase compare
BPHYT_RS33070 +1.0 2.2 haloacid dehalogenase compare
BPHYT_RS26465 +1.0 1.3 metallophosphoesterase compare
BPHYT_RS24500 +1.0 2.1 histidine kinase compare
BPHYT_RS05235 +1.0 1.7 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase compare
BPHYT_RS10240 +1.0 1.4 translation initiation inhibitor compare
BPHYT_RS25845 +1.0 1.3 RND transporter MFP subunit compare
BPHYT_RS05895 +1.0 1.1 hypothetical protein compare
BPHYT_RS18705 +0.9 1.3 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS26490 +0.9 1.1 hypothetical protein compare
BPHYT_RS21665 +0.9 3.7 hypothetical protein compare
BPHYT_RS18590 +0.9 0.7 hypothetical protein compare
BPHYT_RS34815 +0.9 1.2 ABC transporter compare
BPHYT_RS30365 +0.9 1.0 beta-lactamase compare
BPHYT_RS20590 +0.9 1.6 methionine sulfoxide reductase A compare
BPHYT_RS29905 +0.9 1.7 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
BPHYT_RS04335 +0.9 1.3 membrane protein compare
BPHYT_RS23990 +0.9 1.5 N-hydroxyarylamine O-acetyltransferase compare
BPHYT_RS00815 +0.9 1.3 hypothetical protein compare
BPHYT_RS22260 +0.9 1.5 hypothetical protein compare
BPHYT_RS36540 +0.9 2.5 hypothetical protein compare
BPHYT_RS02860 +0.9 0.7 membrane protein compare
BPHYT_RS09385 +0.9 0.9 FAD-dependent oxidoreductase compare
BPHYT_RS20440 +0.9 1.4 IclR family transcriptional regulator compare
BPHYT_RS19660 +0.9 1.6 hypothetical protein compare
BPHYT_RS35750 +0.9 1.1 hypothetical protein compare
BPHYT_RS32880 +0.9 1.1 alanine acetyltransferase compare
BPHYT_RS00855 +0.9 1.7 hypothetical protein compare
BPHYT_RS32435 +0.9 2.2 formate dehydrogenase-N subunit beta compare
BPHYT_RS26965 +0.9 1.1 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS02545 +0.9 3.3 nitrogen regulatory protein P-II 1 compare
BPHYT_RS10710 +0.8 1.0 sensor histidine kinase compare
BPHYT_RS30995 +0.8 0.8 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS26160 +0.8 2.1 membrane protein compare
BPHYT_RS20840 +0.8 1.3 beta-lactamase compare
BPHYT_RS28325 +0.8 1.1 NADPH-dependent FMN reductase compare
BPHYT_RS33630 +0.8 1.0 chromate transporter compare
BPHYT_RS09315 +0.8 0.7 chemotaxis protein CheY compare
BPHYT_RS30890 +0.8 1.4 hypothetical protein compare
BPHYT_RS30750 +0.8 1.1 GntR family transcriptional regulator compare
BPHYT_RS22940 +0.8 1.2 pilus assembly protein TadE compare
BPHYT_RS15550 +0.8 3.5 transcriptional regulator compare
BPHYT_RS15955 +0.8 1.4 methylated-DNA--protein-cysteine methyltransferase compare
BPHYT_RS11655 +0.8 1.7 chromosome partitioning protein ParB compare
BPHYT_RS00705 +0.8 1.1 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS31245 +0.8 1.6 peptide ABC transporter ATP-binding protein compare
BPHYT_RS17165 +0.8 2.4 cell division protein ZapD compare
BPHYT_RS22505 +0.8 1.7 alpha/beta hydrolase compare
BPHYT_RS21505 +0.8 1.9 amidohydrolase compare
BPHYT_RS34905 +0.8 2.8 hypothetical protein compare
BPHYT_RS26355 +0.8 1.3 hypothetical protein compare
BPHYT_RS06995 +0.8 1.8 multidrug DMT transporter permease compare
BPHYT_RS10885 +0.8 2.8 glycosyl transferase compare
BPHYT_RS19435 +0.8 1.7 16S rRNA methyltransferase compare
BPHYT_RS30140 +0.8 0.8 3-methylitaconate isomerase compare
BPHYT_RS14135 +0.8 2.3 phosphate transporter permease subunit PtsA compare
BPHYT_RS31050 +0.8 0.9 epimerase compare
BPHYT_RS29520 +0.8 0.7 hypothetical protein compare
BPHYT_RS27495 +0.8 0.8 hypothetical protein compare
BPHYT_RS13080 +0.8 1.4 hypothetical protein compare
BPHYT_RS16880 +0.7 0.9 malic enzyme compare
BPHYT_RS27735 +0.7 1.6 nitroreductase compare
BPHYT_RS30930 +0.7 2.8 PAS/PAC sensor signal transduction histidine kinase compare
BPHYT_RS08485 +0.7 3.4 undecaprenyl-phosphate glucose phosphotransferase compare
BPHYT_RS28805 +0.7 1.4 glyoxalase compare
BPHYT_RS28535 +0.7 0.9 response regulator receiver compare
BPHYT_RS22125 +0.7 1.7 hypothetical protein compare
BPHYT_RS28605 +0.7 1.2 NADPH-dependent FMN reductase compare
BPHYT_RS35655 +0.7 1.6 hypothetical protein compare
BPHYT_RS14390 +0.7 2.2 peptidase compare
BPHYT_RS17890 +0.7 1.0 shikimate kinase compare
BPHYT_RS21075 +0.7 1.0 (2Fe-2S)-binding protein compare
BPHYT_RS26310 +0.7 1.1 ribonuclease R compare
BPHYT_RS29620 +0.7 0.7 hypothetical protein compare
BPHYT_RS29485 +0.7 1.0 phosphonate ABC transporter ATP-binding protein compare
BPHYT_RS23480 +0.7 1.4 hypothetical protein compare
BPHYT_RS03580 +0.7 1.7 RNA-binding protein S4 compare
BPHYT_RS18665 +0.7 3.7 GumN family protein compare
BPHYT_RS23035 +0.7 0.8 hypothetical protein compare
BPHYT_RS09870 +0.7 1.6 membrane protein compare
BPHYT_RS20430 +0.7 1.3 3-dehydroquinate dehydratase compare
BPHYT_RS11555 +0.7 1.8 allantoinase compare
BPHYT_RS13105 +0.7 2.1 LacI family transcription regulator compare
BPHYT_RS17030 +0.7 1.0 lipid hydroperoxide peroxidase compare
BPHYT_RS21625 +0.7 0.7 LysR family transcriptional regulator compare
BPHYT_RS29195 +0.7 3.2 beta-glucosidase compare
BPHYT_RS36090 +0.7 1.1 hypothetical protein compare
BPHYT_RS09535 +0.7 1.3 BolA family transcriptional regulator compare
BPHYT_RS29165 +0.7 2.3 hypothetical protein compare
BPHYT_RS21905 +0.7 0.7 IclR family transcriptional regulator compare
BPHYT_RS04450 +0.7 3.1 UDP-glucose 4-epimerase compare
BPHYT_RS23690 +0.7 2.1 hypothetical protein compare
BPHYT_RS23410 +0.7 1.2 hypothetical protein compare
BPHYT_RS35275 +0.7 1.4 acetyltransferase compare
BPHYT_RS30825 +0.7 1.4 extradiol dioxygenase compare
BPHYT_RS28025 +0.7 1.3 3-hydroxyisobutyrate dehydrogenase compare
BPHYT_RS35350 +0.7 2.1 amidohydrolase compare
BPHYT_RS32225 +0.7 1.2 hypothetical protein compare
BPHYT_RS05405 +0.6 2.2 GCN5 family acetyltransferase compare
BPHYT_RS35160 +0.6 1.9 PKHD-type hydroxylase compare
BPHYT_RS13810 +0.6 2.0 type VI secretion protein compare
BPHYT_RS12535 +0.6 0.8 membrane protein compare
BPHYT_RS12615 +0.6 1.0 dihydrodipicolinate synthase compare
BPHYT_RS28540 +0.6 2.6 amino acid ABC substrate-binding protein compare
BPHYT_RS15320 +0.6 1.0 hypothetical protein compare
BPHYT_RS06025 +0.6 2.1 hypothetical protein compare
BPHYT_RS07110 +0.6 1.1 LysR family transcriptional regulator compare
BPHYT_RS31935 +0.6 1.9 hypothetical protein compare
BPHYT_RS17640 +0.6 1.5 2-alkenal reductase compare
BPHYT_RS28160 +0.6 1.7 MFS transporter compare
BPHYT_RS24010 +0.6 1.9 L-histidine ABC transporter, permease component 2 (from data) compare
BPHYT_RS23495 +0.6 1.4 thioredoxin reductase compare
BPHYT_RS36415 +0.6 1.8 hypothetical protein compare
BPHYT_RS10540 +0.6 1.2 secretion protein compare
BPHYT_RS35765 +0.6 2.4 ABC transporter permease compare
BPHYT_RS03945 +0.6 1.4 hypothetical protein compare
BPHYT_RS26015 +0.6 1.1 rod shape-determining protein MreB compare
BPHYT_RS24285 +0.6 1.3 TetR family transcriptional regulator compare
BPHYT_RS21925 +0.6 1.5 formimidoylglutamase compare
BPHYT_RS24055 +0.6 2.5 oxidoreductase compare
BPHYT_RS27655 +0.6 1.1 potassium transporter compare
BPHYT_RS10285 +0.6 1.7 hypothetical protein compare
BPHYT_RS08280 +0.6 2.1 acyl dehydratase compare
BPHYT_RS30230 +0.6 1.3 LysR family transcriptional regulator compare
BPHYT_RS04630 +0.6 1.6 amino acid ABC transporter permease compare
BPHYT_RS12670 +0.6 1.3 cell division protein FtsB compare
BPHYT_RS29185 +0.6 1.2 sugar ABC transporter permease compare
BPHYT_RS07475 +0.6 1.2 nitrate reductase compare
BPHYT_RS03065 +0.6 1.3 LuxR family transcriptional regulator compare
BPHYT_RS02725 +0.6 1.7 GntR family transcriptional regulator compare
BPHYT_RS35005 +0.6 2.0 molecular chaperone DnaJ compare
BPHYT_RS05795 +0.6 1.6 hypothetical protein compare
BPHYT_RS18865 +0.6 1.9 flagellar L-ring protein FlgH compare
BPHYT_RS10305 +0.6 1.3 hypothetical protein compare
BPHYT_RS06105 +0.6 0.8 hypothetical protein compare
BPHYT_RS15285 +0.6 1.8 transcription elongation factor GreB compare
BPHYT_RS19890 +0.6 0.9 hypothetical protein compare
BPHYT_RS32820 +0.6 1.6 xylose ABC transporter substrate-binding protein compare
BPHYT_RS21295 +0.6 1.6 AraC family transcriptional regulator compare
BPHYT_RS12825 +0.6 1.1 phasin family protein compare
BPHYT_RS04370 +0.6 0.8 glycosyl transferase compare
BPHYT_RS27210 +0.6 2.0 alcohol dehydrogenase compare
BPHYT_RS18910 +0.6 0.8 FlgN compare
BPHYT_RS33990 +0.6 0.8 ATPase compare
BPHYT_RS09930 +0.6 1.4 LysR family transcriptional regulator compare
BPHYT_RS30085 +0.6 1.0 hypothetical protein compare
BPHYT_RS24270 +0.6 1.7 C4-dicarboxylate ABC transporter substrate-binding protein compare
BPHYT_RS22685 +0.6 2.7 shikimate 5-dehydrogenase compare
BPHYT_RS22200 +0.6 1.7 cardiolipin synthetase compare
BPHYT_RS10400 +0.6 0.7 taurine ABC transporter permease compare
BPHYT_RS30200 +0.6 2.0 FAD-dependent oxidoreductase compare
BPHYT_RS08825 +0.6 0.6 tartronate semialdehyde reductase compare
BPHYT_RS09585 +0.6 1.0 hypothetical protein compare
BPHYT_RS07255 +0.6 1.4 4-oxalocrotonate decarboxylase compare
BPHYT_RS27560 +0.6 1.3 histidine kinase compare
BPHYT_RS24665 +0.6 1.1 ABC transporter permease compare
BPHYT_RS11245 +0.6 1.4 ATPase compare
BPHYT_RS28910 +0.6 1.2 diguanylate phosphodiesterase compare
BPHYT_RS15165 +0.6 1.5 histidine ammonia-lyase compare
BPHYT_RS02595 +0.6 0.6 sulfurtransferase compare
BPHYT_RS31395 +0.6 1.4 thiamine pyrophosphate-binding protein compare
BPHYT_RS33030 +0.6 0.6 hypothetical protein compare
BPHYT_RS30790 +0.6 1.1 porin compare
BPHYT_RS02120 +0.6 1.2 hypothetical protein compare
BPHYT_RS26880 +0.6 1.0 ketosteroid isomerase compare
BPHYT_RS29650 +0.6 1.8 3-oxoacyl-ACP reductase compare
BPHYT_RS21790 +0.6 1.1 hypothetical protein compare
BPHYT_RS27920 +0.6 0.8 tricarballylate utilization protein B compare
BPHYT_RS10095 +0.6 1.3 integrase compare
BPHYT_RS25875 +0.6 1.1 type III secretion protein compare
BPHYT_RS13310 +0.6 0.9 dihydropyrimidine dehydrogenase subunit B compare
BPHYT_RS09755 +0.6 1.1 glycosyl transferase family 1 compare
BPHYT_RS17810 +0.6 1.5 transcriptional regulator compare
BPHYT_RS23930 +0.6 1.5 triphosphoribosyl-dephospho-CoA synthase compare
BPHYT_RS22000 +0.6 0.8 hypothetical protein compare
BPHYT_RS06120 +0.6 0.8 heat-shock protein compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in supernatant control:fungal media experiments

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms