Experiment set20IT010 for Pseudomonas putida KT2440

Compare to:

Growth at pH9 and carbon source D-Glucose

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.8 -4.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4364 -5.9 -5.7 putative Anti-sigma F factor antagonist compare
PP_0289 -5.3 -10.8 Imidazoleglycerol-phosphate dehydratase compare
PP_0967 -5.1 -9.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2371 -5.1 -8.5 Sulphite reductase hemoprotein, beta subunit compare
PP_0082 -4.8 -8.7 tryptophan synthase alpha chain compare
PP_2168 -4.8 -11.6 Transaldolase compare
PP_0083 -4.8 -9.2 tryptophan synthase beta chain compare
PP_4696 -4.8 -4.7 Nitrogen regulation protein NR(I) compare
PP_4678 -4.4 -13.6 Ketol-acid reductoisomerase compare
PP_5155 -4.4 -4.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4804 -4.3 -3.0 RlpA-like lipoprotein compare
PP_1079 -4.3 -6.2 Ornithine carbamoyltransferase compare
PP_1985 -4.2 -4.9 3-isopropylmalate dehydratase large subunit compare
PP_0422 -4.1 -5.3 Indole-3-glycerol phosphate synthase compare
PP_1088 -4.1 -12.4 Argininosuccinate synthase compare
PP_4909 -4.1 -8.6 phosphoserine phosphatase compare
PP_4680 -4.0 -13.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0184 -3.9 -7.7 Argininosuccinate lyase compare
PP_4679 -3.9 -7.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1988 -3.9 -7.9 3-isopropylmalate dehydrogenase compare
PP_5098 -3.8 -6.9 methionine biosynthesis protein MetW compare
PP_3511 -3.8 -7.5 Branched-chain-amino-acid aminotransferase compare
PP_5348 -3.7 -8.7 Transcriptional regulator, LysR family compare
PP_1995 -3.7 -9.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0966 -3.7 -8.3 Histidinol dehydrogenase compare
PP_0164 -3.6 -8.1 conserved protein of unknown function compare
PP_5097 -3.6 -11.4 homoserine O-acetyltransferase compare
PP_5347 -3.5 -10.7 pyruvate carboxylase subunit A compare
PP_5289 -3.5 -4.7 Acetylglutamate kinase compare
PP_5128 -3.5 -8.1 Dihydroxy-acid dehydratase compare
PP_0290 -3.5 -6.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1025 -3.5 -10.5 2-isopropylmalate synthase compare
PP_4122 -3.5 -3.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5303 -3.3 -7.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1986 -3.2 -5.1 3-isopropylmalate dehydratase small subunit compare
PP_5217 -3.2 -11.1 Polyphosphate kinase compare
PP_1898 -3.1 -4.5 MotA/TolQ/ExbB proton channel family protein compare
PP_2001 -3.1 -8.1 O-succinylhomoserine sulfhydrylase compare
PP_4785 -3.1 -5.6 conserved exported protein of unknown function compare
PP_0292 -3.0 -3.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3999 -3.0 -9.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0417 -3.0 -12.5 Anthranilate synthase component 1 compare
PP_4890 -2.9 -4.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_2370 -2.8 -3.3 conserved protein of unknown function compare
PP_5346 -2.8 -5.2 pyruvate carboxylase subunit B compare
PP_0291 -2.7 -2.7 conserved protein of unknown function compare
PP_1022 -2.7 -5.9 glucose 6-phosphate-1-dehydrogenase compare
PP_4700 -2.7 -1.9 pantothenate synthetase compare
PP_5095 -2.6 -1.8 pyrroline-5-carboxylate reductase compare
PP_1231 -2.6 -5.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4099 -2.6 -25.1 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 -2.6 -16.2 Sensor protein GacS compare
PP_5015 -2.5 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5185 -2.5 -6.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0965 -2.5 -7.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1678 -2.5 -3.3 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4994 -2.4 -5.1 conserved protein of unknown function compare
PP_4902 -2.4 -3.1 Oligoribonuclease compare
PP_0846 -2.4 -1.8 DnaK-like molecular chaperone specific for IscU compare
PP_2378 -2.4 -3.8 Fe/S biogenesis protein NfuA compare
PP_0787 -2.3 -3.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0364 -2.3 -7.8 pimeloyl-[acp] methyl ester esterase compare
PP_0421 -2.2 -5.7 Anthranilate phosphoribosyltransferase compare
PP_0393 -2.2 -1.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2327 -2.2 -4.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0366 -2.0 -4.8 dethiobiotin synthetase compare
PP_5216 -2.0 -1.4 exopolyphosphatase compare
PP_0363 -2.0 -7.5 8-amino-7-oxononanoate synthase compare
PP_4964 -2.0 -3.4 D-erythrose 4-phosphate dehydrogenase compare
PP_5014 -1.9 -2.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_3417 -1.9 -5.1 D-gluconate transporter compare
PP_2402 -1.9 -2.1 putative Sensor histidine kinase compare
PP_1675 -1.8 -7.3 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_5248 -1.8 -1.7 putative hydrolase compare
PP_4984 -1.8 -7.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4379 -1.8 -3.9 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2375 -1.8 -9.7 cobalamin-dependent methionine synthase compare
PP_4977 -1.8 -8.0 5,10-methylenetetrahydrofolate reductase compare
PP_2060 -1.8 -3.0 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_3484 -1.8 -4.3 Response regulator receiver protein compare
PP_4504 -1.7 -1.8 conserved exported protein of unknown function compare
PP_0362 -1.7 -7.0 Biotin synthase compare
PP_1664 -1.7 -3.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_3105 -1.7 -1.9 conserved membrane protein of unknown function compare
PP_0420 -1.7 -4.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0735 -1.7 -2.3 molybdopterin-synthase adenylyltransferase compare
PP_1826 -1.6 -1.9 Hydrolase, isochorismatase family compare
PP_4121 -1.6 -4.8 NADH-quinone oxidoreductase subunit C/D compare
PP_4693 -1.6 -4.6 RNA polymerase-binding transcription factor DksA compare
PP_2720 -1.6 -1.7 conserved protein of unknown function compare
PP_1672 -1.6 -5.0 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1656 -1.6 -5.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_0630 -1.5 -1.4 DNA gyrase inhibitor YacG compare
PP_1362 -1.5 -3.4 pyruvate kinase II compare
PP_4829 -1.5 -2.9 putative precorrin-3B synthase compare
PP_0365 -1.5 -5.7 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1764 -1.5 -2.9 Phosphoglycolate phosphatase 2 compare
PP_1679 -1.5 -2.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_3506 -1.4 -1.8 Magnesium chelatase, subunit ChII compare
PP_3204 -1.4 -2.7 conserved protein of unknown function compare
PP_2328 -1.4 -4.1 Phosphoadenosine phosphosulfate reductase compare
PP_0833 -1.4 -1.8 queuine tRNA-ribosyltransferase compare
PP_1017 -1.4 -4.9 mannose/glucose ABC transporter, permease protein compare
PP_1734 -1.4 -2.9 Probable septum site-determining protein MinC compare
PP_4126 -1.4 -1.9 NADH-quinone oxidoreductase subunit I compare
PP_1468 -1.4 -2.0 Tyrosine recombinase XerD compare
PP_0914 -1.3 -6.8 GGDEF domain protein compare
PP_4695 -1.3 -6.1 Sensory box histidine kinase compare
PP_3507 -1.3 -6.8 Aerobic cobaltochelatase subunit CobN compare
PP_5104 -1.3 -6.7 thiazole synthase compare
PP_5054 -1.3 -2.3 glutaredoxin 3 compare
PP_3892 -1.3 -1.4 conserved protein of unknown function compare
PP_1655 -1.3 -2.2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1654 -1.3 -2.2 cysteine synthase B compare
PP_1303 -1.3 -5.1 Sulfate adenylyltransferase subunit 2 compare
PP_5203 -1.2 -4.9 5-formyltetrahydrofolate cyclo-ligase compare
PP_3649 -1.2 -2.3 Transcriptional regulator, GntR family compare
PP_1681 -1.2 -6.0 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4701 -1.2 -1.1 glucose-6-phosphate isomerase compare
PP_1673 -1.2 -3.9 cobyrinate a,c-diamide synthase compare
PP_1677 -1.2 -2.5 Adenosyl-cobyric acid synthase compare
PP_4830 -1.2 -3.9 precorrin-6Y C(5,15)-methyltransferase compare
PP_2880 -1.2 -1.6 Transcriptional regulator, TetR family compare
PP_1493 -1.2 -2.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4782 -1.2 -3.3 Phosphomethylpyrimidine kinase compare
PP_1011 -1.2 -5.6 glucokinase compare
PP_0547 -1.1 -4.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4561 -1.1 -1.0 stress response protein compare
PP_4699 -1.1 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1304 -1.1 -4.8 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2088 -1.1 -1.7 RNA polymerase sigma factor SigX compare
PP_1013 -1.1 -5.8 Sensor histidine kinase compare
PP_4129 -1.1 -2.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1676 -1.1 -2.9 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4340 -1.1 -2.6 response regulator for chemotactic signal transduction compare
PP_2745 -1.0 -2.2 Universal stress protein family compare
PP_5393 -1.0 -1.3 putative metal-binding chaperone compare
PP_2681 -1.0 -1.9 coenzyme PQQ synthesis protein D compare
PP_1912 -1.0 -3.6 Phosphate acyltransferase compare
PP_0627 -1.0 -2.1 conserved protein of unknown function compare
PP_4517 -1.0 -1.4 conserved protein of unknown function compare
PP_5350 -1.0 -1.7 Transcriptional regulator, RpiR family compare
PP_5706 -1.0 -2.1 Sec translocation complex - SecG subunit compare
PP_1733 -1.0 -1.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_4824 -1.0 -4.1 Sensor histidine kinase/response regulator compare
PP_4131 -1.0 -3.7 NADH-quinone oxidoreductase subunit N compare
PP_0719 -1.0 -1.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1605 -1.0 -2.7 Ribonuclease HII compare
PP_4424 -1.0 -1.8 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_5639 -1.0 -4.3 conserved exported protein of unknown function compare
PP_1018 -1.0 -4.2 mannose/glucose ABC transporter - ATP binding subunit compare
PP_5201 -1.0 -1.0 conserved protein of unknown function, UPF0149 family compare
PP_0339 -0.9 -0.9 Pyruvate dehydrogenase E1 component compare
PP_4724 -0.9 -0.6 Carbamoyl-phosphate synthase small chain compare
PP_2145 -0.9 -1.7 beta-N-acetylglucosaminidase compare
PP_4943 -0.9 -1.8 putative Glycosyl transferase compare
PP_2229 -0.9 -2.0 putative K(+)/H(+) antiporter subunit C compare
PP_0376 -0.9 -4.6 Coenzyme PQQ synthesis protein E compare
PP_0087 -0.9 -1.3 conserved exported protein of unknown function compare
PP_4832 -0.9 -1.6 Precorrin-6x reductase compare
PP_5310 -0.9 -2.9 junction-specific ATP-dependent DNA helicase compare
PP_3508 -0.9 -2.4 Protein CobW compare
PP_5609 -0.9 -1.6 conserved protein of unknown function compare
PP_4981 -0.9 -1.5 polyisoprene-binding protein, acidic stress response factor compare
PP_1000 -0.9 -2.5 ornithine carbamoyltransferase, catabolic compare
PP_5035 -0.9 -3.7 Histidine utilization repressor compare
PP_1552 -0.9 -2.3 putative Phage replication protein compare
PP_0834 -0.8 -1.5 Sec translocation complex subunit YajC compare
PP_0959 -0.8 -1.6 phospholipid ABC transporter compare
PP_4058 -0.8 -4.4 1,4-alpha-glucan branching enzyme compare
PP_0138 -0.8 -5.1 conserved membrane protein of unknown function compare
PP_5100 -0.8 -1.6 dITP/XTP pyrophosphatase compare
PP_5017 -0.8 -0.9 Sec-independent protein translocase protein TatB compare
PP_4827 -0.8 -4.1 Precorrin-2 C(20)-methyltransferase compare
PP_3532 -0.8 -1.5 Transcriptional regulator, AsnC family compare
PP_4989 -0.8 -2.1 Protein PilJ compare
PP_2302 -0.8 -1.9 DNA-binding, ATP-dependent protease compare
PP_1444 -0.8 -5.1 quinoprotein glucose dehydrogenase compare
PP_4706 -0.8 -2.1 conserved protein of unknown function compare
PP_2163 -0.8 -3.4 VacJ lipoprotein compare
PP_1568 -0.8 -1.1 conserved protein of unknown function compare
PP_5001 -0.8 -1.8 protease HslVU, ATPase component compare
PP_2624 -0.8 -2.2 conserved protein of unknown function compare
PP_0379 -0.8 -3.3 Coenzyme PQQ synthesis protein B compare
PP_5221 -0.8 -1.8 conserved protein of unknown function, UPF0178 family compare
PP_3206 -0.8 -3.3 conserved protein of unknown function compare
PP_4120 -0.8 -2.3 NADH-quinone oxidoreductase subunit B compare
PP_2929 -0.8 -3.8 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1016 -0.8 -3.6 mannose/glucose ABC transporter, permease protein compare
PP_0378 -0.8 -3.9 Pyrroloquinoline-quinone synthase compare
PP_2067 -0.8 -3.3 putative EmrB/QacA family drug resistance transporter compare
PP_1346 -0.8 -2.5 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_2472 -0.7 -3.0 putative transcriptional regulator, MerR family compare
PP_5295 -0.7 -1.5 conserved protein of unknown function compare
PP_2414 -0.7 -1.9 conserved exported protein of unknown function compare
PP_0122 -0.7 -1.1 conserved exported protein of unknown function compare
PP_5487 -0.7 -1.6 conserved protein of unknown function compare
PP_3946 -0.7 -1.2 HTH-type transcriptional repressor NicR compare
PP_5SB -0.7 -2.6 5S ribosomal RNA compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in pH experiments

For pH D-Glucose across organisms