Experiment set1S86 for Methylophilus sp. DMC18

Compare to:

D-Glucose and casamino acids carbon source

200 most important genes:

  gene name fitness t score description  
GFF2313 -2.8 -5.5 hypothetical protein compare
GFF2748 -2.8 -1.9 Bifunctional PGK/TIM compare
GFF1749 -2.7 -2.6 Cytochrome c biogenesis protein CcsA compare
GFF2602 -2.7 -5.9 Glutamate racemase compare
GFF2327 -2.7 -2.7 Holliday junction ATP-dependent DNA helicase RuvB compare
GFF2578 -2.5 -3.0 putative glycosyltransferase compare
GFF291 -2.4 -2.3 hypothetical protein compare
GFF1248 -2.4 -5.8 N-acetyl-D-glucosamine kinase compare
GFF2275 -2.3 -16.8 Toluene efflux pump outer membrane protein TtgF compare
GFF2277 -2.3 -17.3 Efflux pump periplasmic linker BepD compare
GFF2442 -2.3 -3.0 hypothetical protein compare
GFF2746 -2.3 -3.7 Fructose-1,6-bisphosphatase class 1 compare
GFF2276 -2.2 -20.0 Efflux pump membrane transporter BepE compare
GFF1503 -2.1 -2.0 hypothetical protein compare
GFF2266 -2.1 -3.7 RNase adapter protein RapZ compare
GFF1246 -2.1 -7.6 hypothetical protein compare
GFF2310 -2.1 -3.4 Glycine cleavage system H protein compare
GFF981 -2.1 -2.4 Protein SphX compare
GFF2312 -2.0 -3.2 hypothetical protein compare
GFF1638 -2.0 -2.3 Putative glucose-6-phosphate 1-epimerase compare
GFF1727 -2.0 -2.6 hypothetical protein compare
GFF1245 -1.9 -9.5 Glucose-1-phosphate adenylyltransferase compare
GFF1296 -1.9 -6.6 hypothetical protein compare
GFF689 -1.9 -2.5 hypothetical protein compare
GFF2176 -1.8 -4.0 Lipoyl synthase compare
GFF2278 -1.8 -4.3 hypothetical protein compare
GFF858 -1.7 -3.0 Thiamine-phosphate synthase compare
GFF674 -1.7 -6.0 Phosphoenolpyruvate synthase regulatory protein compare
GFF1305 -1.7 -2.7 Lon protease compare
GFF2762 -1.7 -4.5 Maltodextrin phosphorylase compare
GFF293 -1.7 -3.4 hypothetical protein compare
GFF290 -1.6 -2.3 hypothetical protein compare
GFF1231 -1.6 -7.2 hypothetical protein compare
GFF1247 -1.5 -3.4 4-alpha-glucanotransferase compare
GFF330 -1.5 -6.5 Soluble pyridine nucleotide transhydrogenase compare
GFF2696 -1.5 -9.4 Adenosine kinase compare
GFF2177 -1.5 -6.7 Octanoyltransferase compare
GFF229 -1.5 -2.4 5-methyltetrahydropteroyltriglutamate--homocystei ne methyltransferase compare
GFF1668 -1.5 -3.9 hypothetical protein compare
GFF688 -1.5 -3.2 hypothetical protein compare
GFF1050 -1.5 -2.7 15-cis-phytoene synthase compare
GFF1302 -1.5 -2.3 Trigger factor compare
GFF473 -1.5 -4.8 putative HTH-type transcriptional regulator YurK compare
GFF712 -1.5 -3.6 LL-diaminopimelate aminotransferase compare
GFF691 -1.5 -2.7 hypothetical protein compare
GFF2175 -1.5 -2.7 hypothetical protein compare
GFF476 -1.5 -3.8 hypothetical protein compare
GFF1294 -1.5 -5.9 hypothetical protein compare
GFF1650 -1.4 -4.7 Outer membrane protein OprM compare
GFF2324 -1.4 -2.7 Transcriptional regulatory protein PmpR compare
GFF1196 -1.4 -6.6 Formyltransferase/hydrolase complex Fhc subunit C compare
GFF1292 -1.4 -5.0 hypothetical protein compare
GFF480 -1.4 -5.8 hypothetical protein compare
GFF1052 -1.4 -6.0 S-methyl-5'-thioinosine phosphorylase compare
GFF1999 -1.4 -3.5 hypothetical protein compare
GFF1685 -1.4 -2.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
GFF1124 -1.4 -4.6 Sugar transporter SemiSWEET compare
GFF678 -1.3 -6.2 hypothetical protein compare
GFF1193 -1.3 -6.1 hypothetical protein compare
GFF690 -1.3 -3.3 hypothetical protein compare
GFF2283 -1.3 -3.3 Beta-barrel assembly-enhancing protease compare
GFF1194 -1.3 -6.8 Formyltransferase/hydrolase complex Fhc subunit A compare
GFF57 -1.2 -2.8 Response regulator UvrY compare
GFF360 -1.2 -3.2 RecBCD enzyme subunit RecB compare
GFF1058 -1.2 -6.0 hypothetical protein compare
GFF2178 -1.2 -4.2 hypothetical protein compare
GFF2325 -1.2 -3.0 Crossover junction endodeoxyribonuclease RuvC compare
GFF2571 -1.2 -2.7 Peptidyl-prolyl cis-trans isomerase cyp18 compare
GFF489 -1.2 -2.0 Cadmium, cobalt and zinc/H(+)-K(+) antiporter compare
GFF472 -1.2 -4.4 (3S)-malyl-CoA thioesterase compare
GFF589 -1.2 -3.3 hypothetical protein compare
GFF2174 -1.2 -3.8 Glutathione synthetase compare
GFF1949 -1.2 -2.8 hypothetical protein compare
GFF474 -1.2 -5.1 NADP-dependent malic enzyme compare
GFF292 -1.2 -2.3 hypothetical protein compare
GFF1200 -1.2 -2.9 hypothetical protein compare
GFF2667 -1.2 -5.2 Thermostable monoacylglycerol lipase compare
GFF620 -1.1 -3.1 Exoribonuclease 2 compare
GFF2671 -1.1 -2.9 hypothetical protein compare
GFF1338 -1.1 -3.0 RNA polymerase sigma factor FliA compare
GFF2024 -1.1 -3.7 DNA-binding transcriptional regulator NtrC compare
GFF615 -1.1 -2.7 Peroxide operon regulator compare
GFF1123 -1.1 -9.1 UvrABC system protein B compare
GFF90 -1.1 -2.0 hypothetical protein compare
GFF130 -1.0 -4.8 Molybdate-binding protein ModA compare
GFF994 -1.0 -7.9 Acetyl-coenzyme A synthetase compare
GFF901 -1.0 -5.6 Low affinity potassium transport system protein kup compare
GFF1035 -1.0 -2.7 hypothetical protein compare
GFF2668 -1.0 -1.7 Acyl carrier protein compare
GFF1318 -1.0 -6.5 hypothetical protein compare
GFF475 -1.0 -4.6 Succinate dehydrogenase cytochrome b556 subunit compare
GFF313 -1.0 -1.6 Transcription elongation factor GreA compare
GFF1647 -1.0 -5.3 HTH-type transcriptional regulator TtgR compare
GFF2105 -1.0 -2.0 tRNA modification GTPase MnmE compare
GFF1976 -1.0 -2.5 FMNH(2)-dependent dimethylsulfone monooxygenase compare
GFF477 -1.0 -6.7 Succinate dehydrogenase flavoprotein subunit compare
GFF478 -1.0 -5.1 Succinate dehydrogenase iron-sulfur subunit compare
GFF2796 -1.0 -3.3 Carboxymethylenebutenolidase compare
GFF321 -0.9 -3.5 Amylosucrase compare
GFF800 -0.9 -7.1 Sensor histidine kinase RcsC compare
GFF138 -0.9 -2.0 hypothetical protein compare
GFF1191 -0.9 -2.4 Dual-specificity RNA methyltransferase RlmN compare
GFF1350 -0.9 -6.0 hypothetical protein compare
GFF1658 -0.9 -3.5 DNA polymerase I compare
GFF1355 -0.9 -2.0 hypothetical protein compare
GFF2569 -0.9 -4.0 hypothetical protein compare
GFF2296 -0.9 -2.9 hypothetical protein compare
GFF1511 -0.9 -2.6 hypothetical protein compare
GFF1649 -0.9 -5.2 Efflux pump membrane transporter BepE compare
GFF685 -0.9 -2.8 hypothetical protein compare
GFF680 -0.9 -3.5 hypothetical protein compare
GFF2326 -0.9 -2.1 Holliday junction ATP-dependent DNA helicase RuvA compare
GFF2566 -0.9 -3.9 Arginine biosynthesis bifunctional protein ArgJ compare
GFF1966 -0.9 -1.3 hypothetical protein compare
GFF2595 -0.9 -4.6 putative HTH-type transcriptional regulator YxaF compare
GFF2664 -0.9 -4.6 Ornithine aminotransferase compare
GFF2023 -0.8 -3.1 Sensory histidine kinase/phosphatase NtrB compare
GFF2666 -0.8 -3.9 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
GFF580 -0.8 -2.9 dTDP-glucose 4,6-dehydratase compare
GFF241 -0.8 -1.7 hypothetical protein compare
GFF2126 -0.8 -1.5 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
GFF982 -0.8 -4.1 hypothetical protein compare
GFF1946 -0.8 -0.8 hypothetical protein compare
GFF1304 -0.8 -5.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF687 -0.8 -1.6 hypothetical protein compare
GFF1626 -0.8 -1.3 50S ribosomal protein L33 compare
GFF2620 -0.8 -2.6 hypothetical protein compare
GFF799 -0.8 -2.6 hypothetical protein compare
GFF1113 -0.8 -3.0 Intermembrane transport lipoprotein PqiC compare
GFF2735 -0.8 -3.2 Elongation factor 4 compare
GFF2606 -0.8 -3.7 Thymidylate kinase compare
GFF924 -0.8 -2.5 Beta-hexosaminidase compare
GFF2790 -0.8 -1.8 hypothetical protein compare
GFF2265 -0.8 -2.0 PTS system mannose-specific EIIAB component compare
GFF983 -0.8 -3.8 hypothetical protein compare
GFF2323 -0.8 -1.8 putative cystine transporter YijE compare
GFF1056 -0.7 -4.3 Bifunctional uridylyltransferase/uridylyl-removing enzyme compare
GFF2821 -0.7 -2.9 Macrolide export protein MacA compare
GFF408 -0.7 -1.5 hypothetical protein compare
GFF765 -0.7 -2.0 Ribosomal RNA small subunit methyltransferase D compare
GFF2436 -0.7 -3.9 GTP 3',8-cyclase compare
GFF2282 -0.7 -3.9 Cyclic pyranopterin monophosphate synthase compare
GFF199 -0.7 -1.3 Nitrite reductase (NADH) small subunit compare
GFF993 -0.7 -3.9 Peptide chain release factor 3 compare
GFF794 -0.7 -3.4 Transcriptional activator protein NhaR compare
GFF1036 -0.7 -4.1 Lon protease compare
GFF2487 -0.7 -4.6 Cyclopropane-fatty-acyl-phospholipid synthase compare
GFF1328 -0.7 -2.1 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
GFF1282 -0.7 -3.9 GTP-binding protein TypA/BipA compare
GFF2090 -0.7 -1.6 ATP synthase epsilon chain compare
GFF1535 -0.7 -2.0 Tyrosine recombinase XerC compare
GFF1704 -0.7 -1.6 hypothetical protein compare
GFF264 -0.7 -3.7 N-acetylmuramate/N-acetylglucosamine kinase compare
GFF1788 -0.7 -4.8 Chaperone protein ClpB compare
GFF1987 -0.7 -1.2 hypothetical protein compare
GFF67 -0.7 -2.0 hypothetical protein compare
GFF2339 -0.7 -1.3 tRNA (guanine-N(1)-)-methyltransferase compare
GFF2133 -0.7 -1.9 hypothetical protein compare
GFF2568 -0.6 -3.4 Cell division coordinator CpoB compare
GFF137 -0.6 -1.4 Ferredoxin-3 compare
GFF891 -0.6 -1.7 hypothetical protein compare
GFF1034 -0.6 -1.7 Molybdopterin synthase sulfur carrier subunit compare
GFF807 -0.6 -1.5 Cytochrome subunit of sulfide dehydrogenase compare
GFF2824 -0.6 -2.8 Outer membrane protein TolC compare
GFF2755 -0.6 -3.6 Exopolyphosphatase compare
GFF1767 -0.6 -0.7 Glutamate 5-kinase compare
GFF1542 -0.6 -1.7 hypothetical protein compare
GFF145 -0.6 -1.2 Iron-binding protein IscA compare
GFF1233 -0.6 -4.3 5-methylthioadenosine/S-adenosylhomocysteine deaminase compare
GFF361 -0.6 -1.2 ATP-dependent helicase/deoxyribonuclease subunit B compare
GFF392 -0.6 -1.3 hypothetical protein compare
GFF1435 -0.6 -1.4 hypothetical protein compare
GFF2691 -0.6 -4.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
GFF2629 -0.6 -4.2 Heme A synthase compare
GFF2795 -0.6 -2.7 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating compare
GFF683 -0.6 -2.0 tRNA dimethylallyltransferase compare
GFF270 -0.6 -2.6 Xaa-Pro aminopeptidase compare
GFF2447 -0.6 -2.1 hypothetical protein compare
GFF2322 -0.6 -1.2 hypothetical protein compare
GFF2665 -0.6 -3.3 hypothetical protein compare
GFF1285 -0.6 -4.0 hypothetical protein compare
GFF382 -0.6 -4.0 hypothetical protein compare
GFF2832 -0.6 -1.7 Polyribonucleotide nucleotidyltransferase compare
GFF2621 -0.6 -3.4 Cytochrome c oxidase subunit 2 compare
GFF2843 -0.6 -1.2 Diacylglycerol kinase compare
GFF2622 -0.6 -4.3 Cytochrome c oxidase subunit 1 compare
GFF1244 -0.6 -2.8 1,4-alpha-glucan branching enzyme GlgB compare
GFF2825 -0.6 -1.9 hypothetical protein compare
GFF2630 -0.6 -4.5 Protoheme IX farnesyltransferase compare
GFF239 -0.6 -1.5 hypothetical protein compare
GFF2625 -0.6 -3.5 Cytochrome c oxidase subunit 3 compare
GFF835 -0.6 -2.1 Molybdopterin adenylyltransferase compare
GFF126 -0.6 -1.2 hypothetical protein compare
GFF2022 -0.6 -2.2 hypothetical protein compare
GFF1628 -0.5 -2.1 Deoxyuridine 5'-triphosphate nucleotidohydrolase compare
GFF925 -0.5 -2.8 hypothetical protein compare
GFF2000 -0.5 -2.2 hypothetical protein compare
GFF1785 -0.5 -3.3 Cyclic di-GMP phosphodiesterase compare
GFF1482 -0.5 -2.5 Cell division protein ZapA compare
GFF1904 -0.5 -2.0 Ribosome-binding ATPase YchF compare


Specific Phenotypes

None in this experiment

For Methylophilus sp. DMC18 in carbon source experiments

For carbon source D-Glucose across organisms