Experiment set1S69 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; ambient oxygen

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_05690 +1.7 12.9 Protein phosphotransferase ChpT compare
MPMX19_01349 +1.5 10.8 hypothetical protein compare
MPMX19_02460 +1.4 13.2 Motility protein A compare
MPMX19_01482 +1.4 11.6 hypothetical protein compare
MPMX19_01479 +1.4 8.2 hypothetical protein compare
MPMX19_04088 +1.4 5.9 Signal recognition particle 54 kDa protein compare
MPMX19_04198 +1.4 11.7 hypothetical protein compare
MPMX19_05685 +1.3 10.2 Protein-glutamate methylesterase/protein-glutamine glutaminase 2 compare
MPMX19_01480 +1.3 8.2 hypothetical protein compare
MPMX19_01781 +1.3 10.1 Enoyl-[acyl-carrier-protein] reductase [NADH] FabI compare
MPMX19_00852 +1.3 3.5 hypothetical protein compare
MPMX19_00708 +1.2 9.9 hypothetical protein compare
MPMX19_05581 +1.2 3.3 hypothetical protein compare
MPMX19_00438 +1.2 10.4 (R)-specific enoyl-CoA hydratase compare
MPMX19_03976 +1.1 6.8 hypothetical protein compare
MPMX19_04225 +1.1 7.0 hypothetical protein compare
MPMX19_00868 +1.1 10.2 Sensor kinase CckA compare
MPMX19_04090 +1.0 8.0 Anaerobic nitric oxide reductase transcription regulator NorR compare
MPMX19_05687 +1.0 6.0 Chemotaxis protein CheW compare
MPMX19_06585 +1.0 9.6 hypothetical protein compare
MPMX19_01493 +1.0 3.1 Flagellar assembly protein FliX compare
MPMX19_04622 +1.0 7.8 hypothetical protein compare
MPMX19_03072 +1.0 1.3 hypothetical protein compare
MPMX19_01481 +1.0 8.0 Flagellar motor switch protein FliM compare
MPMX19_06510 +1.0 2.7 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_01454 +1.0 2.8 hypothetical protein compare
MPMX19_06545 +1.0 9.0 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
MPMX19_06580 +0.9 5.4 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_06544 +0.9 8.2 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
MPMX19_01494 +0.9 7.2 Flagellar P-ring protein compare
MPMX19_00212 +0.9 8.1 Nitrogen fixation regulation protein FixK compare
MPMX19_01486 +0.9 6.3 Flagellar L-ring protein compare
MPMX19_04204 +0.9 6.4 D-alanine--D-alanyl carrier protein ligase compare
MPMX19_05688 +0.9 5.9 Sensor histidine kinase RcsC compare
MPMX19_01485 +0.9 7.3 hypothetical protein compare
MPMX19_04212 +0.9 7.4 Photosystem I assembly protein Ycf3 compare
MPMX19_05678 +0.9 6.2 hypothetical protein compare
MPMX19_03069 +0.9 2.8 hypothetical protein compare
MPMX19_06584 +0.9 8.1 Asparagine synthetase [glutamine-hydrolyzing] 1 compare
MPMX19_04258 +0.9 3.4 hypothetical protein compare
MPMX19_04206 +0.9 4.3 3-oxoacyl-[acyl-carrier-protein] synthase 3 compare
MPMX19_04276 +0.9 3.2 hypothetical protein compare
MPMX19_06577 +0.9 7.1 hypothetical protein compare
MPMX19_03790 +0.9 1.6 hypothetical protein compare
MPMX19_04624 +0.9 6.4 hypothetical protein compare
MPMX19_06581 +0.9 6.6 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 compare
MPMX19_06582 +0.8 7.2 hypothetical protein compare
MPMX19_00311 +0.8 7.3 hypothetical protein compare
MPMX19_05623 +0.8 4.2 Photosynthetic apparatus regulatory protein RegA compare
MPMX19_03618 +0.8 4.9 hypothetical protein compare
MPMX19_04089 +0.8 6.7 Flagellar biosynthesis protein FlhA compare
MPMX19_03789 +0.8 3.4 hypothetical protein compare
MPMX19_04727 +0.8 3.7 hypothetical protein compare
MPMX19_05679 +0.8 6.1 Flagellum-specific ATP synthase compare
MPMX19_02999 +0.8 2.5 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_00515 +0.8 5.9 hypothetical protein compare
MPMX19_06734 +0.8 7.0 Alginate biosynthesis protein AlgA compare
MPMX19_06808 +0.8 2.2 HTH-type transcriptional regulator DmlR compare
MPMX19_04093 +0.8 3.3 hypothetical protein compare
MPMX19_04224 +0.7 7.0 hypothetical protein compare
MPMX19_00854 +0.7 6.9 hypothetical protein compare
MPMX19_05622 +0.7 5.8 Sensor histidine kinase RegB compare
MPMX19_04200 +0.7 4.9 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase compare
MPMX19_06644 +0.7 6.7 GDP-mannose 4,6-dehydratase compare
MPMX19_01217 +0.7 2.8 Ribosomal RNA small subunit methyltransferase C compare
MPMX19_05152 +0.7 2.6 Phosphonoacetaldehyde hydrolase compare
MPMX19_01484 +0.7 5.1 Flagellar basal-body rod protein FlgG compare
MPMX19_04449 +0.7 1.1 Inosine-5'-monophosphate dehydrogenase compare
MPMX19_00725 +0.7 4.2 Transcriptional regulatory protein ros compare
MPMX19_04209 +0.7 6.3 Lipopolysaccharide assembly protein B compare
MPMX19_04199 +0.7 5.0 Pseudaminic acid synthase compare
MPMX19_04222 +0.7 6.3 hypothetical protein compare
MPMX19_04638 +0.7 1.8 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_05656 +0.7 2.2 HTH-type transcriptional activator RhaR compare
MPMX19_04531 +0.7 2.2 hypothetical protein compare
MPMX19_04623 +0.7 3.6 hypothetical protein compare
MPMX19_06763 +0.7 2.9 hypothetical protein compare
MPMX19_03123 +0.7 1.8 Citrate lyase acyl carrier protein compare
MPMX19_04508 +0.7 3.2 Phosphoglycolate phosphatase compare
MPMX19_05586 +0.7 1.4 hypothetical protein compare
MPMX19_06928 +0.7 2.2 hypothetical protein compare
MPMX19_01729 +0.7 1.7 Ethylmalonyl-CoA/methylmalonyl-CoA epimerase compare
MPMX19_01483 +0.7 5.4 Flagellar basal-body rod protein FlgG compare
MPMX19_00334 +0.7 1.7 hypothetical protein compare
MPMX19_05686 +0.7 2.3 Chemotaxis protein CheY compare
MPMX19_02254 +0.7 2.6 hypothetical protein compare
MPMX19_01495 +0.7 1.5 hypothetical protein compare
MPMX19_01645 +0.7 1.6 HTH-type transcriptional regulator GltC compare
MPMX19_00675 +0.6 1.7 Peptidoglycan-associated lipoprotein compare
MPMX19_00867 +0.6 5.7 Flagellar biosynthetic protein FlhB compare
MPMX19_01978 +0.6 1.3 hypothetical protein compare
MPMX19_06907 +0.6 2.7 L-talarate/galactarate dehydratase compare
MPMX19_02746 +0.6 4.8 Peptidyl-lysine N-acetyltransferase Pat compare
MPMX19_01076 +0.6 1.4 Molybdopterin synthase catalytic subunit compare
MPMX19_00863 +0.6 4.1 Flagellar basal-body rod protein FlgC compare
MPMX19_04825 +0.6 1.5 hypothetical protein compare
MPMX19_00191 +0.6 2.1 hypothetical protein compare
MPMX19_00211 +0.6 2.5 putative copper-importing P-type ATPase A compare
MPMX19_06979 +0.6 1.9 hypothetical protein compare
MPMX19_01948 +0.6 4.8 Chemotaxis protein CheA compare
MPMX19_01119 +0.6 2.2 hypothetical protein compare
MPMX19_04223 +0.6 5.2 hypothetical protein compare
MPMX19_06874 +0.6 2.0 hypothetical protein compare
MPMX19_06888 +0.6 2.0 hypothetical protein compare
MPMX19_01652 +0.6 2.5 hypothetical protein compare
MPMX19_05178 +0.6 2.6 Alkanesulfonate monooxygenase compare
MPMX19_04743 +0.6 2.2 Formyltransferase/hydrolase complex subunit D compare
MPMX19_01445 +0.6 2.2 hypothetical protein compare
MPMX19_06498 +0.6 2.2 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_06896 +0.6 2.4 L-aspartate oxidase compare
MPMX19_06044 +0.6 1.5 hypothetical protein compare
MPMX19_01949 +0.6 5.2 Chemotaxis protein CheW compare
MPMX19_00864 +0.6 2.3 Flagellar hook-basal body complex protein FliE compare
MPMX19_01875 +0.6 2.4 hypothetical protein compare
MPMX19_04916 +0.6 2.3 DNA-binding transcriptional activator DecR compare
MPMX19_06490 +0.6 1.0 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_05850 +0.6 1.7 hypothetical protein compare
MPMX19_02668 +0.6 4.1 RNA polymerase sigma-54 factor 2 compare
MPMX19_06156 +0.6 2.0 hypothetical protein compare
MPMX19_06759 +0.6 1.3 Taurine import ATP-binding protein TauB compare
MPMX19_04207 +0.6 2.4 hypothetical protein compare
MPMX19_02202 +0.6 1.3 hypothetical protein compare
MPMX19_06578 +0.5 4.1 hypothetical protein compare
MPMX19_01618 +0.5 4.3 hypothetical protein compare
MPMX19_01496 +0.5 4.0 hypothetical protein compare
MPMX19_05096 +0.5 2.2 L-cystine import ATP-binding protein TcyC compare
MPMX19_06272 +0.5 0.9 hypothetical protein compare
MPMX19_04968 +0.5 1.8 hypothetical protein compare
MPMX19_04262 +0.5 3.0 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_00429 +0.5 2.0 hypothetical protein compare
MPMX19_02502 +0.5 2.3 hypothetical protein compare
MPMX19_04682 +0.5 1.1 hypothetical protein compare
MPMX19_00318 +0.5 3.1 hypothetical protein compare
MPMX19_06917 +0.5 1.9 HTH-type transcriptional regulator PgrR compare
MPMX19_06099 +0.5 4.2 hypothetical protein compare
MPMX19_06526 +0.5 2.4 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_05205 +0.5 1.9 hypothetical protein compare
MPMX19_05202 +0.5 2.1 Tryptophan synthase beta chain compare
MPMX19_04092 +0.5 3.0 Flagellar motor switch protein FliN compare
MPMX19_02310 +0.5 1.8 hypothetical protein compare
MPMX19_03450 +0.5 0.9 hypothetical protein compare
MPMX19_00851 +0.5 3.3 hypothetical protein compare
MPMX19_05921 +0.5 1.4 hypothetical protein compare
MPMX19_05714 +0.5 3.5 hypothetical protein compare
MPMX19_01940 +0.5 2.6 Ribosomal RNA large subunit methyltransferase H compare
MPMX19_03916 +0.5 1.6 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
MPMX19_05454 +0.5 1.5 hypothetical protein compare
MPMX19_01604 +0.5 2.7 hypothetical protein compare
MPMX19_02055 +0.5 2.3 Hypoxic response protein 1 compare
MPMX19_03811 +0.5 2.0 hypothetical protein compare
MPMX19_00268 +0.5 1.4 Transcriptional regulatory protein OmpR compare
MPMX19_03934 +0.5 1.1 hypothetical protein compare
MPMX19_00225 +0.5 3.0 hypothetical protein compare
MPMX19_02020 +0.5 2.1 hypothetical protein compare
MPMX19_02865 +0.5 1.6 hypothetical protein compare
MPMX19_01622 +0.5 2.7 hypothetical protein compare
MPMX19_02871 +0.5 2.4 HTH-type transcriptional activator RhaR compare
MPMX19_06519 +0.5 1.0 HTH-type transcriptional repressor NagR compare
MPMX19_00853 +0.5 3.8 hypothetical protein compare
MPMX19_03688 +0.5 2.2 Response regulator UvrY compare
MPMX19_01679 +0.5 2.4 hypothetical protein compare
MPMX19_06420 +0.5 2.1 hypothetical protein compare
MPMX19_06506 +0.5 1.5 hypothetical protein compare
MPMX19_06918 +0.5 2.4 Esterase EstB compare
MPMX19_03965 +0.5 4.4 Poly(3-hydroxyalkanoate) polymerase subunit PhaC compare
MPMX19_00534 +0.5 3.1 hypothetical protein compare
MPMX19_06547 +0.5 2.7 hypothetical protein compare
MPMX19_02937 +0.5 0.8 hypothetical protein compare
MPMX19_06006 +0.5 2.0 hypothetical protein compare
MPMX19_04755 +0.5 2.1 Ureidoglycolate lyase compare
MPMX19_04786 +0.5 3.0 Thymidylate kinase compare
MPMX19_03806 +0.5 1.9 hypothetical protein compare
MPMX19_02876 +0.5 2.3 hypothetical protein compare
MPMX19_03287 +0.5 2.2 6-aminohexanoate-cyclic-dimer hydrolase compare
MPMX19_01497 +0.5 1.9 hypothetical protein compare
MPMX19_02492 +0.5 1.8 hypothetical protein compare
MPMX19_01073 +0.5 1.8 5'-nucleotidase compare
MPMX19_02778 +0.5 1.6 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_01394 +0.5 0.7 hypothetical protein compare
MPMX19_06353 +0.5 0.9 hypothetical protein compare
MPMX19_06341 +0.5 1.6 hypothetical protein compare
MPMX19_05762 +0.5 1.5 hypothetical protein compare
MPMX19_05176 +0.5 1.1 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase compare
MPMX19_05798 +0.5 1.2 HTH-type transcriptional repressor NanR compare
MPMX19_00686 +0.4 1.3 hypothetical protein compare
MPMX19_06594 +0.4 4.1 hypothetical protein compare
MPMX19_05307 +0.4 2.9 hypothetical protein compare
MPMX19_06677 +0.4 1.4 hypothetical protein compare
MPMX19_00046 +0.4 1.3 hypothetical protein compare
MPMX19_00580 +0.4 1.8 hypothetical protein compare
MPMX19_05207 +0.4 1.0 Hemolysin secretion protein D, plasmid compare
MPMX19_03884 +0.4 1.9 hypothetical protein compare
MPMX19_04091 +0.4 3.0 Chemotaxis protein PomA compare
MPMX19_06878 +0.4 1.8 Putative amino-acid ABC transporter-binding protein YhdW compare
MPMX19_05539 +0.4 2.2 Sensor histidine kinase RcsC compare
MPMX19_03195 +0.4 0.7 hypothetical protein compare
MPMX19_03292 +0.4 1.7 hypothetical protein compare
MPMX19_06634 +0.4 3.5 GDP-L-fucose synthase compare
MPMX19_06197 +0.4 0.9 hypothetical protein compare
MPMX19_05295 +0.4 0.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in nl-ccm; ambient oxygen experiments