Experiment set1S569 for Rhodanobacter sp000427505 FW510-R12

Compare to:

biofilm; Day1; NLDM; Aluminum chloride hydrate 1mM

200 most detrimental genes:

  gene name fitness t score description  
LRK53_RS16900 +2.6 8.9 ribose-5-phosphate isomerase RpiA compare
LRK53_RS13380 +1.7 3.2 hypothetical protein compare
LRK53_RS17185 +1.6 3.1 copper-containing nitrite reductase compare
LRK53_RS07025 +1.5 1.5 ABC transporter ATP-binding protein compare
LRK53_RS11190 +1.5 4.0 type IV pilus biogenesis/stability protein PilW compare
LRK53_RS12465 +1.5 1.9 helix-turn-helix domain-containing protein compare
LRK53_RS08355 +1.4 2.6 tryptophan synthase subunit alpha compare
LRK53_RS01630 +1.4 3.7 protein-disulfide reductase DsbD compare
LRK53_RS11035 +1.3 3.1 major capsid protein compare
LRK53_RS13565 +1.3 1.6 isocitrate dehydrogenase compare
LRK53_RS05810 +1.3 3.7 DUF4097 family beta strand repeat-containing protein compare
LRK53_RS01830 +1.2 1.6 hypothetical protein compare
LRK53_RS13260 +1.2 2.6 NAD(P)-dependent alcohol dehydrogenase compare
LRK53_RS05060 +1.2 1.7 hypothetical protein compare
LRK53_RS01625 +1.2 3.8 TlpA family protein disulfide reductase compare
LRK53_RS07980 +1.2 1.2 GNAT family N-acetyltransferase compare
LRK53_RS16300 +1.1 1.7 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK53_RS13180 +1.1 2.0 hypothetical protein compare
LRK53_RS14400 +1.1 1.2 TetR family transcriptional regulator compare
LRK53_RS08695 +1.0 6.9 amidophosphoribosyltransferase compare
LRK53_RS06715 +1.0 1.2 [protein-PII] uridylyltransferase compare
LRK53_RS07635 +1.0 2.5 FUSC family protein compare
LRK53_RS08820 +1.0 1.4 YbaB/EbfC family nucleoid-associated protein compare
LRK53_RS07600 +1.0 1.0 ABC transporter ATP-binding protein compare
LRK53_RS06000 +1.0 6.1 hypothetical protein compare
LRK53_RS07420 +1.0 2.0 DNA repair protein RadA compare
LRK53_RS05295 +1.0 8.9 phosphoribosylformylglycinamidine synthase compare
LRK53_RS08665 +1.0 1.7 hypothetical protein compare
LRK53_RS03635 +0.9 1.2 50S ribosomal protein L33 compare
LRK53_RS09090 +0.9 6.9 polyribonucleotide nucleotidyltransferase compare
LRK53_RS05555 +0.9 1.3 NfeD family protein compare
LRK53_RS13655 +0.9 2.2 SCP2 sterol-binding domain-containing protein compare
LRK53_RS06110 +0.9 1.6 NAD(P) transhydrogenase subunit alpha compare
LRK53_RS05930 +0.9 1.8 endonuclease domain-containing protein compare
LRK53_RS17105 +0.9 4.6 ribulose-phosphate 3-epimerase compare
LRK53_RS16860 +0.9 1.0 cytochrome bd-I oxidase subunit CydX compare
LRK53_RS05965 +0.9 6.0 glycosyltransferase family 2 protein compare
LRK53_RS06515 +0.9 1.2 amidase family protein compare
LRK53_RS04155 +0.9 1.7 DUF2383 domain-containing protein compare
LRK53_RS12880 +0.9 1.1 hypothetical protein compare
LRK53_RS03970 +0.9 2.9 hypothetical protein compare
LRK53_RS05625 +0.9 2.3 shikimate kinase compare
LRK53_RS09595 +0.9 0.8 hypothetical protein compare
LRK53_RS13925 +0.9 1.5 NrsF family protein compare
LRK53_RS02295 +0.9 4.1 ribokinase compare
LRK53_RS14520 +0.9 0.9 GNAT family N-acetyltransferase compare
LRK53_RS01235 +0.8 1.0 monovalent cation:proton antiporter-2 (CPA2) family protein compare
LRK53_RS06225 +0.8 4.0 tetratricopeptide repeat protein compare
LRK53_RS13540 +0.8 1.8 glycine cleavage system protein R compare
LRK53_RS07395 +0.8 1.7 iron-sulfur cluster assembly accessory protein compare
LRK53_RS19135 +0.8 2.5 hypothetical protein compare
LRK53_RS15200 +0.8 0.9 flagellar protein FlgN compare
LRK53_RS17410 +0.8 1.4 DUF456 domain-containing protein compare
LRK53_RS17340 +0.8 2.4 arginase compare
LRK53_RS06845 +0.8 2.2 preprotein translocase subunit YajC compare
LRK53_RS18135 +0.8 1.6 hypothetical protein compare
LRK53_RS17765 +0.8 1.9 lipoyl synthase compare
LRK53_RS11155 +0.8 5.0 glutamine-hydrolyzing GMP synthase compare
LRK53_RS06990 +0.8 1.8 hypothetical protein compare
LRK53_RS00945 +0.8 1.3 helix-turn-helix domain-containing protein compare
LRK53_RS01735 +0.8 6.9 TolC family outer membrane protein compare
LRK53_RS14735 +0.8 1.2 copper-containing nitrite reductase compare
LRK53_RS01340 +0.8 6.4 DedA family protein compare
LRK53_RS17205 +0.8 3.2 fumarylacetoacetate hydrolase family protein compare
LRK53_RS19110 +0.8 1.1 hypothetical protein compare
LRK53_RS18060 +0.8 2.6 GNAT family N-acetyltransferase compare
LRK53_RS04100 +0.8 1.3 DUF3247 family protein compare
LRK53_RS10085 +0.8 1.2 TIGR04282 family arsenosugar biosynthesis glycosyltransferase compare
LRK53_RS11005 +0.7 1.1 Tn3 family resolvase compare
LRK53_RS03630 +0.7 5.7 fatty acid desaturase compare
LRK53_RS15180 +0.7 1.3 chemotaxis protein compare
LRK53_RS05830 +0.7 1.9 arylesterase compare
LRK53_RS03575 +0.7 2.9 AI-2E family transporter compare
LRK53_RS06840 +0.7 2.9 tRNA guanosine(34) transglycosylase Tgt compare
LRK53_RS13510 +0.7 4.6 polynucleotide adenylyltransferase PcnB compare
LRK53_RS04265 +0.7 2.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK53_RS02075 +0.7 2.6 hypothetical protein compare
LRK53_RS12275 +0.7 1.2 Smr/MutS family protein compare
LRK53_RS18430 +0.7 2.5 hypothetical protein compare
LRK53_RS18285 +0.7 1.4 hypothetical protein compare
LRK53_RS18420 +0.7 3.0 hypothetical protein compare
LRK53_RS06070 +0.7 2.3 nucleotidyltransferase family protein compare
LRK53_RS18450 +0.7 2.8 hypothetical protein compare
LRK53_RS02545 +0.7 1.7 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK53_RS09460 +0.7 2.3 methylisocitrate lyase compare
LRK53_RS16990 +0.7 2.5 anthranilate phosphoribosyltransferase compare
LRK53_RS16625 +0.7 1.8 efflux RND transporter permease subunit compare
LRK53_RS07775 +0.7 1.9 helix-turn-helix domain-containing protein compare
LRK53_RS06870 +0.7 0.7 SUF system Fe-S cluster assembly regulator compare
LRK53_RS15730 +0.7 1.4 HPr family phosphocarrier protein compare
LRK53_RS01845 +0.7 3.7 rubredoxin compare
LRK53_RS02855 +0.7 1.1 tetratricopeptide repeat protein compare
LRK53_RS06915 +0.7 3.6 non-heme iron oxygenase ferredoxin subunit compare
LRK53_RS04620 +0.7 3.4 CPBP family intramembrane metalloprotease compare
LRK53_RS08100 +0.7 1.0 MBL fold metallo-hydrolase compare
LRK53_RS06910 +0.7 2.0 GNAT family N-acetyltransferase compare
LRK53_RS15140 +0.7 2.5 flagellar basal body P-ring protein FlgI compare
LRK53_RS01145 +0.7 3.5 transglycosylase SLT domain-containing protein compare
LRK53_RS15230 +0.7 3.5 hypothetical protein compare
LRK53_RS03620 +0.6 2.4 ABC transporter permease compare
LRK53_RS02815 +0.6 1.5 DmsE family decaheme c-type cytochrome compare
LRK53_RS15170 +0.6 2.0 flagellar basal body rod protein FlgC compare
LRK53_RS14190 +0.6 0.9 MAPEG family protein compare
LRK53_RS17900 +0.6 0.6 dUTP diphosphatase compare
LRK53_RS14290 +0.6 1.2 penicillin acylase family protein compare
LRK53_RS18755 +0.6 1.2 hypothetical protein compare
LRK53_RS14095 +0.6 5.9 polyketide cyclase compare
LRK53_RS06570 +0.6 0.6 DUF615 domain-containing protein compare
LRK53_RS15020 +0.6 1.7 flagellar biosynthetic protein FliR compare
LRK53_RS00325 +0.6 2.8 antirepressor compare
LRK53_RS06635 +0.6 1.7 hypothetical protein compare
LRK53_RS09520 +0.6 0.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK53_RS05500 +0.6 4.8 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS02595 +0.6 5.1 efflux RND transporter permease subunit compare
LRK53_RS16675 +0.6 0.7 DUF58 domain-containing protein compare
LRK53_RS13375 +0.6 4.6 acetyl-CoA C-acyltransferase compare
LRK53_RS06850 +0.6 0.6 protein translocase subunit SecD compare
LRK53_RS04640 +0.6 0.8 helix-turn-helix domain-containing protein compare
LRK53_RS11490 +0.6 1.5 preprotein translocase subunit SecG compare
LRK53_RS04310 +0.6 0.8 YdcH family protein compare
LRK53_RS18810 +0.6 2.7 S26 family signal peptidase compare
LRK53_RS09375 +0.6 3.5 lipase compare
LRK53_RS01520 +0.6 1.6 rhodanese-like domain-containing protein compare
LRK53_RS07490 +0.6 3.0 phytoene synthase compare
LRK53_RS18840 +0.6 2.0 type-F conjugative transfer system secretin TraK compare
LRK53_RS04780 +0.6 2.1 YceI family protein compare
LRK53_RS14715 +0.6 1.8 zinc-binding protein compare
LRK53_RS17220 +0.6 1.3 MarR family winged helix-turn-helix transcriptional regulator compare
LRK53_RS18610 +0.6 0.9 response regulator transcription factor compare
LRK53_RS11620 +0.6 1.2 hypothetical protein compare
LRK53_RS13740 +0.6 1.8 hypothetical protein compare
LRK53_RS11990 +0.6 3.5 translation elongation factor 4 compare
LRK53_RS01695 +0.6 1.9 zinc-finger domain-containing protein compare
LRK53_RS14350 +0.6 1.8 Spx/MgsR family RNA polymerase-binding regulatory protein compare
LRK53_RS09805 +0.6 1.9 TraB/GumN family protein compare
LRK53_RS02245 +0.6 4.0 MMPL family transporter compare
LRK53_RS12070 +0.6 3.2 kinase/pyrophosphorylase compare
LRK53_RS12115 +0.6 3.4 SurA N-terminal domain-containing protein compare
LRK53_RS06820 +0.6 1.8 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK53_RS00590 +0.5 1.4 DUF488 domain-containing protein compare
LRK53_RS04515 +0.5 3.6 serine hydrolase compare
LRK53_RS15725 +0.5 4.4 PTS fructose transporter subunit IIA compare
LRK53_RS04440 +0.5 1.5 electron transfer flavoprotein subunit beta/FixA family protein compare
LRK53_RS02945 +0.5 3.3 phosphoribosylamine--glycine ligase compare
LRK53_RS07335 +0.5 2.0 hypothetical protein compare
LRK53_RS07985 +0.5 1.4 hypothetical protein compare
LRK53_RS00435 +0.5 1.6 S8 family serine peptidase compare
LRK53_RS02085 +0.5 2.5 hypothetical protein compare
LRK53_RS16165 +0.5 1.4 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
LRK53_RS08635 +0.5 1.1 M48 family metallopeptidase compare
LRK53_RS04595 +0.5 2.1 alpha/beta hydrolase compare
LRK53_RS13445 +0.5 2.7 DUF1289 domain-containing protein compare
LRK53_RS03340 +0.5 2.2 glutathione S-transferase family protein compare
LRK53_RS03695 +0.5 3.7 glutamate--cysteine ligase compare
LRK53_RS14020 +0.5 3.5 DUF2007 domain-containing protein compare
LRK53_RS10340 +0.5 2.1 hypothetical protein compare
LRK53_RS02455 +0.5 1.2 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
LRK53_RS18390 +0.5 0.7 hypothetical protein compare
LRK53_RS15100 +0.5 1.4 flagellar protein FliT compare
LRK53_RS13965 +0.5 1.2 NAD(P)H-dependent oxidoreductase compare
LRK53_RS07360 +0.5 1.7 Rid family hydrolase compare
LRK53_RS07880 +0.5 3.1 type II toxin-antitoxin system RelE/ParE family toxin compare
LRK53_RS16830 +0.5 1.4 PilZ domain-containing protein compare
LRK53_RS10465 +0.5 2.4 ABC transporter permease compare
LRK53_RS17550 +0.5 2.2 hypothetical protein compare
LRK53_RS15215 +0.5 1.6 MBL fold metallo-hydrolase compare
LRK53_RS06010 +0.5 3.9 pilin compare
LRK53_RS09280 +0.5 2.5 amidohydrolase compare
LRK53_RS15715 +0.5 4.2 HPr(Ser) kinase/phosphatase compare
LRK53_RS02265 +0.5 2.3 beta-ketoacyl synthase chain length factor compare
LRK53_RS12605 +0.5 1.1 hypothetical protein compare
LRK53_RS03090 +0.5 3.1 ketol-acid reductoisomerase compare
LRK53_RS10770 +0.5 2.3 hypothetical protein compare
LRK53_RS04680 +0.5 0.7 DUF1304 domain-containing protein compare
LRK53_RS07510 +0.5 3.3 TonB-dependent siderophore receptor compare
LRK53_RS00430 +0.5 0.9 conjugal transfer protein TraR compare
LRK53_RS08595 +0.5 2.0 DUF72 domain-containing protein compare
LRK53_RS16330 +0.5 2.5 TonB-dependent receptor plug domain-containing protein compare
LRK53_RS09845 +0.5 3.4 asparagine synthase B compare
LRK53_RS19125 +0.5 1.1 GPI inositol-deacylase compare
LRK53_RS13695 +0.5 0.8 response regulator compare
LRK53_RS00930 +0.5 1.4 K+/H+ antiporter subunit F compare
LRK53_RS18255 +0.5 1.0 hypothetical protein compare
LRK53_RS06005 +0.5 3.4 tetratricopeptide repeat protein compare
LRK53_RS02260 +0.5 1.8 glycosyltransferase family 2 protein compare
LRK53_RS14475 +0.5 0.5 hypothetical protein compare
LRK53_RS02990 +0.5 0.5 pyridoxal-phosphate dependent enzyme compare
LRK53_RS12800 +0.5 0.5 DUF4190 domain-containing protein compare
LRK53_RS18640 +0.5 3.4 Tn3 family transposase compare
LRK53_RS07680 +0.5 3.1 hydroxymethylglutaryl-CoA lyase compare
LRK53_RS15155 +0.5 1.4 flagellar basal-body rod protein FlgF compare
LRK53_RS18425 +0.5 1.9 hypothetical protein compare
LRK53_RS00025 +0.5 4.2 tetratricopeptide repeat protein compare
LRK53_RS17300 +0.5 2.2 DUF6348 family protein compare
LRK53_RS09315 +0.5 0.8 pseudouridine synthase compare
LRK53_RS09865 +0.5 1.6 thioesterase compare
LRK53_RS07145 +0.5 1.7 thioredoxin compare
LRK53_RS02030 +0.5 3.2 phospholipase D family protein compare
LRK53_RS13085 +0.4 1.5 SCO family protein compare
LRK53_RS12565 +0.4 1.2 imidazolonepropionase compare


Specific Phenotypes

For 1 genes in this experiment

For biofilm assay; biofilm sample Aluminum chloride hydrate in Rhodanobacter sp000427505 FW510-R12

For biofilm assay; biofilm sample Aluminum chloride hydrate across organisms