Experiment set1S48 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_03123 +1.0 2.5 Citrate lyase acyl carrier protein compare
MPMX19_00414 +1.0 2.4 Pyruvate dehydrogenase complex repressor compare
MPMX19_06610 +0.9 1.8 hypothetical protein compare
MPMX19_04633 +0.9 3.8 hypothetical protein compare
MPMX19_06917 +0.8 2.7 HTH-type transcriptional regulator PgrR compare
MPMX19_00297 +0.8 1.6 4-carboxy-4-hydroxy-2-oxoadipate aldolase compare
MPMX19_06519 +0.8 1.9 HTH-type transcriptional repressor NagR compare
MPMX19_01811 +0.8 2.6 hypothetical protein compare
MPMX19_03710 +0.8 3.7 Glycine cleavage system transcriptional activator compare
MPMX19_04680 +0.8 2.9 Inner membrane ABC transporter permease protein YdcV compare
MPMX19_05551 +0.8 2.8 Chemotaxis protein CheY compare
MPMX19_01067 +0.7 2.1 hypothetical protein compare
MPMX19_02811 +0.7 2.6 Long-chain-alcohol dehydrogenase 1 compare
MPMX19_06979 +0.7 1.9 hypothetical protein compare
MPMX19_06355 +0.7 2.5 hypothetical protein compare
MPMX19_03948 +0.7 1.7 tRNA-Ser compare
MPMX19_03724 +0.7 1.3 hypothetical protein compare
MPMX19_04898 +0.6 2.3 Transcriptional regulatory protein LnrK compare
MPMX19_03846 +0.6 2.1 hypothetical protein compare
MPMX19_05618 +0.6 2.1 putative manganese efflux pump MntP compare
MPMX19_04726 +0.6 2.1 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_04990 +0.6 2.5 Hydrogen peroxide-inducible genes activator compare
MPMX19_03939 +0.6 2.2 Enoyl-CoA-hydratase compare
MPMX19_00543 +0.6 1.5 Molybdenum cofactor guanylyltransferase compare
MPMX19_01342 +0.6 2.1 hypothetical protein compare
MPMX19_04531 +0.6 1.9 hypothetical protein compare
MPMX19_04449 +0.6 0.9 Inosine-5'-monophosphate dehydrogenase compare
MPMX19_06471 +0.6 2.7 Glyoxylate/hydroxypyruvate reductase A compare
MPMX19_04636 +0.6 2.0 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_01955 +0.6 1.1 Putative anti-sigma factor antagonist compare
MPMX19_00764 +0.6 2.0 ECF RNA polymerase sigma factor EcfG compare
MPMX19_01864 +0.6 1.4 Regulatory protein AtoC compare
MPMX19_06933 +0.6 1.9 Manganese transport system ATP-binding protein MntB compare
MPMX19_03655 +0.6 1.0 hypothetical protein compare
MPMX19_00212 +0.6 4.6 Nitrogen fixation regulation protein FixK compare
MPMX19_06193 +0.6 1.5 Flagellar hook-basal body complex protein FliE compare
MPMX19_05207 +0.6 1.1 Hemolysin secretion protein D, plasmid compare
MPMX19_02492 +0.5 1.5 hypothetical protein compare
MPMX19_01119 +0.5 1.3 hypothetical protein compare
MPMX19_02703 +0.5 1.4 hypothetical protein compare
MPMX19_04508 +0.5 1.5 Phosphoglycolate phosphatase compare
MPMX19_02094 +0.5 2.2 hypothetical protein compare
MPMX19_00362 +0.5 1.9 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_02279 +0.5 1.8 hypothetical protein compare
MPMX19_03233 +0.5 2.9 Iron(3+)-hydroxamate import system permease protein FhuB compare
MPMX19_02041 +0.5 1.2 Protein YciI compare
MPMX19_05178 +0.5 2.2 Alkanesulfonate monooxygenase compare
MPMX19_01645 +0.5 1.1 HTH-type transcriptional regulator GltC compare
MPMX19_04916 +0.5 2.2 DNA-binding transcriptional activator DecR compare
MPMX19_06808 +0.5 1.3 HTH-type transcriptional regulator DmlR compare
MPMX19_03116 +0.5 2.1 Vitamin B12 import ATP-binding protein BtuD compare
MPMX19_05195 +0.5 2.0 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_05623 +0.5 1.8 Photosynthetic apparatus regulatory protein RegA compare
MPMX19_06035 +0.5 2.8 Phosphate import ATP-binding protein PstB compare
MPMX19_03715 +0.5 1.8 Response regulator ArlR compare
MPMX19_02787 +0.5 2.1 (R)-benzylsuccinyl-CoA dehydrogenase compare
MPMX19_05313 +0.5 1.5 4,4'-diapolycopene aldehyde oxidase compare
MPMX19_01475 +0.5 2.1 hypothetical protein compare
MPMX19_03212 +0.5 1.8 hypothetical protein compare
MPMX19_05605 +0.5 1.3 hypothetical protein compare
MPMX19_00206 +0.5 3.5 Cytochrome c oxidase subunit 1, bacteroid compare
MPMX19_00204 +0.5 1.3 hypothetical protein compare
MPMX19_03320 +0.5 1.7 hypothetical protein compare
MPMX19_03815 +0.5 1.9 hypothetical protein compare
MPMX19_03934 +0.5 1.7 hypothetical protein compare
MPMX19_05520 +0.5 2.1 hypothetical protein compare
MPMX19_05850 +0.5 1.3 hypothetical protein compare
MPMX19_05622 +0.5 3.4 Sensor histidine kinase RegB compare
MPMX19_04973 +0.5 2.3 hypothetical protein compare
MPMX19_03297 +0.5 1.3 hypothetical protein compare
MPMX19_04560 +0.5 1.8 hypothetical protein compare
MPMX19_05459 +0.5 1.1 hypothetical protein compare
MPMX19_00190 +0.5 1.7 hypothetical protein compare
MPMX19_00074 +0.5 1.5 Electron transfer flavoprotein subunit beta compare
MPMX19_04963 +0.5 0.8 Cysteine desulfurase IscS compare
MPMX19_03472 +0.5 1.4 Fatty acid metabolism regulator protein compare
MPMX19_04792 +0.5 1.9 hypothetical protein compare
MPMX19_04609 +0.5 2.4 Putative short-chain type dehydrogenase/reductase compare
MPMX19_01956 +0.5 2.0 hypothetical protein compare
MPMX19_03535 +0.5 2.4 hypothetical protein compare
MPMX19_00665 +0.5 1.6 hypothetical protein compare
MPMX19_05852 +0.5 2.2 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_00716 +0.4 2.6 Hydrogenase maturation factor HypD compare
MPMX19_02792 +0.4 1.6 HTH-type transcriptional regulator KipR compare
MPMX19_01704 +0.4 1.1 hypothetical protein compare
MPMX19_03048 +0.4 1.5 hypothetical protein compare
MPMX19_01643 +0.4 2.3 hypothetical protein compare
MPMX19_02122 +0.4 2.6 hypothetical protein compare
MPMX19_03069 +0.4 0.8 hypothetical protein compare
MPMX19_00942 +0.4 1.5 hypothetical protein compare
MPMX19_06896 +0.4 1.8 L-aspartate oxidase compare
MPMX19_00818 +0.4 1.6 hypothetical protein compare
MPMX19_05924 +0.4 2.7 hypothetical protein compare
MPMX19_05043 +0.4 1.9 hypothetical protein compare
MPMX19_03716 +0.4 1.7 hypothetical protein compare
MPMX19_06981 +0.4 1.7 hypothetical protein compare
MPMX19_04985 +0.4 0.7 HTH-type transcriptional regulator DmlR compare
MPMX19_06646 +0.4 2.0 hypothetical protein compare
MPMX19_05344 +0.4 2.4 HTH-type transcriptional regulator YofA compare
MPMX19_06264 +0.4 1.8 hypothetical protein compare
MPMX19_05035 +0.4 2.1 ATP synthase subunit a compare
MPMX19_04638 +0.4 0.9 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_05936 +0.4 1.8 Alpha-galactosidase compare
MPMX19_05528 +0.4 1.7 hypothetical protein compare
MPMX19_03924 +0.4 1.3 hypothetical protein compare
MPMX19_01059 +0.4 0.8 hypothetical protein compare
MPMX19_06387 +0.4 1.7 hypothetical protein compare
MPMX19_06989 +0.4 1.1 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_00527 +0.4 2.5 hypothetical protein compare
MPMX19_06514 +0.4 2.6 L-methionine gamma-lyase compare
MPMX19_04099 +0.4 1.6 Chemotaxis protein CheY compare
MPMX19_03039 +0.4 1.2 Cyclic AMP receptor protein compare
MPMX19_06090 +0.4 1.1 Pyruvate dehydrogenase complex repressor compare
MPMX19_04145 +0.4 1.0 hypothetical protein compare
MPMX19_05726 +0.4 1.1 hypothetical protein compare
MPMX19_04687 +0.4 1.2 Atrazine chlorohydrolase compare
MPMX19_01614 +0.4 1.3 hypothetical protein compare
MPMX19_02794 +0.4 2.1 hypothetical protein compare
MPMX19_01604 +0.4 2.0 hypothetical protein compare
MPMX19_06770 +0.4 2.2 NAD-dependent glycerol dehydrogenase compare
MPMX19_03450 +0.4 0.8 hypothetical protein compare
MPMX19_05181 +0.4 1.0 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_06513 +0.4 2.0 putative N-succinyldiaminopimelate aminotransferase DapC compare
MPMX19_03963 +0.4 2.1 hypothetical protein compare
MPMX19_03790 +0.4 1.2 hypothetical protein compare
MPMX19_05160 +0.4 2.0 hypothetical protein compare
MPMX19_04154 +0.4 1.7 hypothetical protein compare
MPMX19_00472 +0.4 0.9 Protein HesB, heterocyst compare
MPMX19_06263 +0.4 1.4 hypothetical protein compare
MPMX19_03093 +0.4 1.2 Manganese import ATP-binding protein ScaC compare
MPMX19_06197 +0.4 0.7 hypothetical protein compare
MPMX19_02691 +0.4 1.9 hypothetical protein compare
MPMX19_02536 +0.4 1.4 hypothetical protein compare
MPMX19_01351 +0.4 1.7 hypothetical protein compare
MPMX19_05733 +0.4 1.4 Biopolymer transport protein ExbD compare
MPMX19_02851 +0.4 1.3 hypothetical protein compare
MPMX19_06737 +0.4 1.6 2-oxoisovalerate dehydrogenase subunit beta compare
MPMX19_00064 +0.4 2.3 hypothetical protein compare
MPMX19_04781 +0.4 1.7 hypothetical protein compare
MPMX19_04731 +0.4 1.9 hypothetical protein compare
MPMX19_03092 +0.4 1.9 High-affinity zinc uptake system membrane protein ZnuB compare
MPMX19_00718 +0.4 1.2 hypothetical protein compare
MPMX19_02199 +0.4 2.5 Inner membrane ABC transporter permease protein YdcV compare
MPMX19_06348 +0.4 2.3 NADPH-Fe(3+) oxidoreductase subunit beta compare
MPMX19_03621 +0.4 1.8 N-acetylglucosamine repressor compare
MPMX19_06272 +0.4 0.6 hypothetical protein compare
MPMX19_00500 +0.4 1.7 hypothetical protein compare
MPMX19_03536 +0.4 1.4 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_00577 +0.4 1.7 Ribosomal RNA small subunit methyltransferase E compare
MPMX19_03156 +0.4 1.8 Ribonuclease VapC28 compare
MPMX19_03476 +0.4 1.4 hypothetical protein compare
MPMX19_01454 +0.4 1.0 hypothetical protein compare
MPMX19_04739 +0.4 1.5 NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase compare
MPMX19_03578 +0.4 1.2 HTH-type transcriptional regulator PgrR compare
MPMX19_01367 +0.4 1.2 Protein YhfA compare
MPMX19_01917 +0.4 1.0 hypothetical protein compare
MPMX19_05342 +0.4 1.7 hypothetical protein compare
MPMX19_04324 +0.4 1.7 Segregation and condensation protein A compare
MPMX19_04244 +0.4 1.7 hypothetical protein compare
MPMX19_01729 +0.4 0.8 Ethylmalonyl-CoA/methylmalonyl-CoA epimerase compare
MPMX19_01616 +0.4 1.1 hypothetical protein compare
MPMX19_03287 +0.4 1.9 6-aminohexanoate-cyclic-dimer hydrolase compare
MPMX19_00244 +0.4 1.7 hypothetical protein compare
MPMX19_00664 +0.4 0.9 hypothetical protein compare
MPMX19_02977 +0.4 1.5 2-iminobutanoate/2-iminopropanoate deaminase compare
MPMX19_00024 +0.4 1.7 3-dehydro-bile acid delta(4,6)-reductase compare
MPMX19_06144 +0.4 1.2 hypothetical protein compare
MPMX19_02335 +0.4 2.2 hypothetical protein compare
MPMX19_00031 +0.4 0.9 hypothetical protein compare
MPMX19_06267 +0.4 1.1 hypothetical protein compare
MPMX19_02076 +0.3 2.3 Carnitine operon protein CaiE compare
MPMX19_00492 +0.3 1.1 Cobalamin biosynthesis protein CbiB compare
MPMX19_01609 +0.3 1.2 hypothetical protein compare
MPMX19_06333 +0.3 1.5 Regulatory protein AtoC compare
MPMX19_00091 +0.3 2.3 hypothetical protein compare
MPMX19_05527 +0.3 2.2 hypothetical protein compare
MPMX19_04650 +0.3 2.1 Polyphosphate:AMP phosphotransferase compare
MPMX19_03278 +0.3 1.8 hypothetical protein compare
MPMX19_00730 +0.3 2.0 hypothetical protein compare
MPMX19_06964 +0.3 1.5 HTH-type transcriptional regulator KipR compare
MPMX19_02092 +0.3 1.2 hypothetical protein compare
MPMX19_04380 +0.3 1.9 HTH-type transcriptional repressor AllR compare
MPMX19_06221 +0.3 1.7 L-2-keto-3-deoxyarabonate dehydratase compare
MPMX19_03195 +0.3 0.8 hypothetical protein compare
MPMX19_06959 +0.3 2.2 hypothetical protein compare
MPMX19_03439 +0.3 0.9 hypothetical protein compare
MPMX19_02875 +0.3 1.0 hypothetical protein compare
MPMX19_05878 +0.3 1.8 L-cystine-binding protein FliY compare
MPMX19_02965 +0.3 1.1 hypothetical protein compare
MPMX19_04265 +0.3 1.0 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_06281 +0.3 1.3 hypothetical protein compare
MPMX19_05362 +0.3 0.6 hypothetical protein compare
MPMX19_06948 +0.3 1.6 Peptidyl-lysine N-acetyltransferase Pat compare
MPMX19_01983 +0.3 1.7 ADP-dependent (S)-NAD(P)H-hydrate dehydratase compare
MPMX19_03569 +0.3 1.3 hypothetical protein compare
MPMX19_00615 +0.3 1.3 hypothetical protein compare
MPMX19_06287 +0.3 1.4 hypothetical protein compare
MPMX19_04743 +0.3 1.0 Formyltransferase/hydrolase complex subunit D compare
MPMX19_04533 +0.3 1.1 HTH-type transcriptional regulator NimR compare
MPMX19_06853 +0.3 1.2 Glyoxylate/hydroxypyruvate reductase A compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum across organisms