Experiment set1S415 for Escherichia coli ECRC62

Compare to:

Bas61

200 most important genes:

  gene name fitness t score description  
BNILDI_18970 minE -4.4 -1.8 cell division topological specificity factor MinE compare
BNILDI_04505 pstA -3.9 -2.6 phosphate ABC transporter permease PstA compare
BNILDI_17095 ynfA -3.9 -2.6 YnfA family protein compare
BNILDI_08670 secM -3.2 -1.3 secA translation cis-regulator SecM compare
BNILDI_02205 trkA -3.2 -2.2 Trk system potassium transporter TrkA compare
BNILDI_05905 Tyr_trna -3.2 -1.3 tRNA-Tyr(gta) compare
BNILDI_22735 -3.1 -1.3 DUF1778 domain-containing protein compare
BNILDI_17560 -2.9 -2.4 Putative type III effector protein (Leucine rich repeat protein) compare
BNILDI_04850 wzxE -2.5 -1.7 lipid III flippase WzxE compare
BNILDI_16595 lpp -2.5 -1.2 murein lipoprotein Lpp compare
BNILDI_13420 nuoJ -2.4 -3.6 NADH-quinone oxidoreductase subunit J compare
BNILDI_15985 yeaO -2.4 -1.3 Uncharacterized protein YeaO compare
BNILDI_11985 glyA -2.3 -2.2 serine hydroxymethyltransferase compare
BNILDI_07485 Leu_trna -2.3 -1.1 tRNA-Leu(caa) compare
BNILDI_09960 ubiI -2.2 -2.2 FAD-dependent 2-octaprenylphenol hydroxylase compare
BNILDI_10025 xerD -2.2 -2.1 site-specific tyrosine recombinase XerD compare
BNILDI_11600 smpB -2.2 -1.8 SsrA-binding protein SmpB compare
BNILDI_06835 epmB -2.1 -2.4 EF-P beta-lysylation protein EpmB compare
BNILDI_06890 epmA -2.1 -1.9 elongation factor P--(R)-beta-lysine ligase compare
BNILDI_04780 rep -1.9 -2.2 DNA helicase Rep compare
BNILDI_08425 rsmA -1.9 -1.8 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
BNILDI_21330 sdhC -1.9 -1.4 succinate dehydrogenase cytochrome b556 subunit compare
BNILDI_01630 nusA -1.9 -2.2 Transcription termination/antitermination protein NusA compare
BNILDI_04605 mnmG -1.9 -3.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
BNILDI_22685 clpP -1.9 -3.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
BNILDI_18805 ychF -1.8 -3.6 redox-regulated ATPase YchF compare
BNILDI_04405 -1.8 -3.2 tRNA modification GTPase MnmE compare
BNILDI_07505 -1.8 -2.4 IclR family transcriptional regulator compare
BNILDI_08765 aceE -1.8 -3.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
BNILDI_18315 sapF -1.8 -1.6 peptide ABC transporter ATP-binding protein SapF compare
BNILDI_16505 aroD -1.7 -2.6 3-dehydroquinate dehydratase compare
BNILDI_10045 lysS -1.7 -1.5 lysine--tRNA ligase compare
BNILDI_13385 nuoB -1.7 -2.9 NADH-quinone oxidoreductase subunit NuoB compare
BNILDI_15935 dmlR -1.7 -1.4 DNA-binding transcriptional regulator DmlR compare
BNILDI_16340 pfkB -1.7 -1.4 6-phosphofructokinase II compare
BNILDI_15605 -1.7 -1.8 metal-dependent hydrolase compare
BNILDI_14405 yegR -1.6 -1.5 Uncharacterized protein YegR compare
BNILDI_10070 ygfS -1.6 -1.7 Putative electron transport protein YgfS compare
BNILDI_12215 guaA -1.6 -3.3 glutamine-hydrolyzing GMP synthase compare
BNILDI_06030 yjaG -1.6 -3.5 Uncharacterized protein YjaG compare
BNILDI_05145 fre -1.6 -5.5 NAD(P)H-flavin reductase compare
BNILDI_06295 dgkA -1.5 -2.0 diacylglycerol kinase compare
BNILDI_18420 -1.5 -1.7 type I DNA topoisomerase compare
BNILDI_13330 pta -1.5 -1.4 phosphate acetyltransferase compare
BNILDI_13220 usg -1.5 -2.4 aspartate-semialdehyde dehydrogenase compare
BNILDI_20405 trxB -1.4 -2.4 thioredoxin-disulfide reductase compare
BNILDI_22670 lon_P403L -1.4 -2.9 Lon protease compare
BNILDI_13425 nuoK -1.4 -2.6 NADH-quinone oxidoreductase subunit NuoK compare
BNILDI_18510 yciB -1.4 -1.2 septation protein A compare
BNILDI_10365 rppH -1.4 -1.0 RNA pyrophosphohydrolase compare
BNILDI_12220 yfgI -1.4 -1.1 Uncharacterized protein YfgI compare
BNILDI_08770 aceF -1.4 -1.2 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase compare
BNILDI_11105 recA -1.3 -2.0 recombinase RecA compare
BNILDI_09050 yadS -1.3 -2.2 UPF0126 inner membrane protein YadS compare
BNILDI_10495 ygdI -1.3 -1.4 Uncharacterized lipoprotein YgdI compare
BNILDI_05170 trkH -1.3 -2.4 Trk system potassium transporter TrkH compare
BNILDI_21485 pgm -1.2 -0.8 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
BNILDI_07450 holC -1.2 -2.6 DNA polymerase III subunit chi compare
BNILDI_16410 -1.2 -1.6 hok/gef family protein compare
BNILDI_08580 cra -1.2 -3.8 catabolite repressor/activator compare
BNILDI_15700 holE -1.2 -0.7 DNA polymerase III subunit theta compare
BNILDI_09405 tetR(B -1.2 -1.1 tetracycline resistance transcriptional repressor TetR(B) compare
BNILDI_02690 envZ -1.2 -4.8 two-component system sensor histidine kinase EnvZ compare
BNILDI_06875 -1.2 -1.0 Fumarate reductase subunit C compare
BNILDI_03185 pitA -1.2 -3.2 inorganic phosphate transporter PitA compare
BNILDI_09775 tkt -1.2 -2.5 transketolase compare
BNILDI_07500 -1.2 -1.0 Transposase compare
BNILDI_15580 -1.2 -1.2 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase compare
BNILDI_07065 ulaR -1.2 -2.8 HTH-type transcriptional regulator UlaR compare
BNILDI_13060 -1.1 -6.6 bactoprenol glucosyl transferase compare
BNILDI_13405 nuoG -1.1 -4.3 NADH-quinone oxidoreductase subunit NuoG compare
BNILDI_18760 prmC -1.1 -2.2 peptide chain release factor N(5)-glutamine methyltransferase compare
BNILDI_18290 ymjA -1.1 -1.5 Uncharacterized protein YmjA compare
BNILDI_10865 hosA -1.1 -0.9 Transcriptional regulator HosA compare
BNILDI_18520 tonB -1.1 -2.5 TonB system transport protein TonB compare
BNILDI_13400 nuoF -1.1 -3.4 NADH-quinone oxidoreductase subunit NuoF compare
BNILDI_08275 -1.1 -1.1 hypothetical protein compare
BNILDI_05565 pfkA -1.1 -4.6 6-phosphofructokinase compare
BNILDI_06995 purA -1.1 -2.6 adenylosuccinate synthase compare
BNILDI_01890 nanR -1.1 -3.1 transcriptional regulator NanR compare
BNILDI_17020 asr -1.1 -0.6 acid resistance repetitive basic protein Asr compare
BNILDI_05650 hslV -1.1 -0.7 ATP-dependent protease subunit HslV compare
BNILDI_09205 yaeR -1.1 -1.2 VOC family protein compare
BNILDI_01595 pnp -1.1 -4.8 polyribonucleotide nucleotidyltransferase compare
BNILDI_08415 apaH -1.1 -2.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
BNILDI_21645 gltI -1.1 -2.2 glutamate/aspartate ABC transporter substrate-binding protein GltI compare
BNILDI_13430 nuoL -1.1 -4.1 NADH-quinone oxidoreductase subunit L compare
BNILDI_03950 -1.1 -2.5 beta1,3-glucosyltransferase compare
BNILDI_20195 aspC -1.1 -5.4 aspartate transaminase compare
BNILDI_03870 trmL -1.1 -1.2 tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL compare
BNILDI_01940 mdh -1.1 -3.4 malate dehydrogenase compare
BNILDI_05830 sthA -1.1 -2.3 Si-specific NAD(P)(+) transhydrogenase compare
BNILDI_20395 ftsK -1.1 -3.4 DNA translocase FtsK compare
BNILDI_11160 gshA -1.0 -4.2 glutamate--cysteine ligase compare
BNILDI_15600 -1.0 -1.2 alpha-glycosidase compare
BNILDI_15650 kdgA -1.0 -3.3 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
BNILDI_09810 cysA -1.0 -0.6 ABC transporter ATP-binding protein compare
BNILDI_21310 sucA -1.0 -3.0 2-oxoglutarate dehydrogenase E1 component compare
BNILDI_21040 bioB -1.0 -2.1 biotin synthase BioB compare
BNILDI_13485 menB -1.0 -2.2 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
BNILDI_13380 nuoA -1.0 -3.0 NADH-quinone oxidoreductase subunit NuoA compare
BNILDI_13965 rihB -1.0 -1.6 ribosylpyrimidine nucleosidase compare
BNILDI_15485 nudB -1.0 -2.3 dihydroneopterin triphosphate diphosphatase compare
BNILDI_18900 fadR -1.0 -2.7 fatty acid metabolism transcriptional regulator FadR compare
BNILDI_21320 sdhA -1.0 -4.8 succinate dehydrogenase flavoprotein subunit compare
BNILDI_17005 mdtI -1.0 -1.0 multidrug/spermidine efflux SMR transporter subunit MdtI compare
BNILDI_05915 Thr_trna -1.0 -1.2 tRNA-Thr(ggt) compare
BNILDI_08200 mog -1.0 -1.6 molybdopterin adenylyltransferase compare
BNILDI_14260 apbC -1.0 -3.4 iron-sulfur cluster carrier protein ApbC compare
BNILDI_12925 yfdY -1.0 -1.5 Uncharacterized protein YfdY compare
BNILDI_10020 fldB -1.0 -4.2 flavodoxin FldB compare
BNILDI_11875 lepA -1.0 -1.6 translation elongation factor 4 compare
BNILDI_02615 aroB -1.0 -4.2 3-dehydroquinate synthase compare
BNILDI_09725 gshB -1.0 -3.8 glutathione synthase compare
BNILDI_10345 ygdR -1.0 -1.1 lipoprotein YgdR compare
BNILDI_01580 deaD -0.9 -3.8 ATP-dependent RNA helicase DeaD compare
BNILDI_04515 pstS -0.9 -3.7 phosphate ABC transporter substrate-binding protein PstS compare
BNILDI_13440 nuoN -0.9 -2.9 NADH-quinone oxidoreductase subunit NuoN compare
BNILDI_03125 ptsH -0.9 -0.8 HPr family phosphocarrier protein compare
BNILDI_06270 -0.9 -1.1 Putative type III effector protein compare
BNILDI_11585 -0.9 -1.8 hypothetical protein compare
BNILDI_07000 nsrR -0.9 -3.6 nitric oxide-sensing transcriptional repressor NsrR compare
BNILDI_02740 -0.9 -3.4 NfuA family Fe-S biogenesis protein compare
BNILDI_11100 pncC -0.9 -3.0 nicotinamide-nucleotide amidase compare
BNILDI_10390 -0.9 -1.7 Prepilin peptidase dependent protein B compare
BNILDI_21075 -0.9 -0.7 hypothetical protein compare
BNILDI_13395 nuoE -0.9 -0.7 NADH-quinone oxidoreductase subunit NuoE compare
BNILDI_13390 nuoC -0.9 -3.3 NADH-quinone oxidoreductase subunit C/D compare
BNILDI_09185 rnhB -0.9 -1.0 ribonuclease HII compare
BNILDI_07530 -0.9 -1.0 Transposase compare
BNILDI_03260 -0.9 -0.5 YhiS compare
BNILDI_15590 -0.9 -1.0 sugar ABC transporter permease compare
BNILDI_02695 ompR_G63V -0.9 -4.7 two-component system response regulator OmpR compare
BNILDI_00265 gpt -0.9 -0.8 xanthine phosphoribosyltransferase compare
BNILDI_08260 fimD -0.9 -1.0 fimbrial assembly protein compare
BNILDI_13085 -0.9 -2.0 hypothetical protein compare
BNILDI_16875 ydgT -0.9 -1.1 transcription modulator YdgT compare
BNILDI_02675 hslO -0.9 -1.6 Hsp33 family molecular chaperone HslO compare
BNILDI_08265 -0.9 -2.0 Fimbrial protein compare
BNILDI_09800 fumE -0.8 -1.6 fumarase E compare
BNILDI_00550 gspS2 -0.8 -0.8 Pilotin AspS 2 compare
BNILDI_02795 glpD -0.8 -2.6 glycerol-3-phosphate dehydrogenase compare
BNILDI_01235 mzrA -0.8 -3.5 EnvZ/OmpR regulon moderator MzrA compare
BNILDI_21325 sdhD -0.8 -3.2 succinate dehydrogenase membrane anchor subunit compare
BNILDI_22930 aroM -0.8 -2.9 Protein AroM compare
BNILDI_19430 bssS -0.8 -2.9 biofilm formation regulator BssS compare
BNILDI_16610 ydhY -0.8 -1.1 ferredoxin-like protein compare
BNILDI_12345 -0.8 -1.4 Hydrogenase 4 subunit D compare
BNILDI_10955 hypB -0.8 -1.0 hydrogenase nickel incorporation protein HypB compare
BNILDI_09690 rdgB -0.8 -3.6 XTP/dITP diphosphatase compare
BNILDI_09695 yggU -0.8 -1.8 DUF167 domain-containing protein compare
BNILDI_04720 maoP -0.8 -2.7 macrodomain Ori organization protein MaoP compare
BNILDI_18400 ymiC -0.8 -1.2 Protein YmiC compare
BNILDI_15595 -0.8 -0.7 maltose ABC transporter permease compare
BNILDI_05720 metL -0.8 -5.1 bifunctional aspartate kinase/homoserine dehydrogenase II compare
BNILDI_01585 yrbN -0.8 -1.3 Uncharacterized protein YrbN compare
BNILDI_01740 mlaC -0.8 -0.9 phospholipid-binding protein MlaC compare
BNILDI_01805 ptsN -0.8 -2.5 PTS IIA-like nitrogen regulatory protein PtsN compare
BNILDI_14600 wcaI -0.8 -3.4 colanic acid biosynthesis fucosyltransferase WcaI compare
BNILDI_04220 ysdE -0.8 -0.7 Protein YsdE compare
BNILDI_07860 hpaI -0.8 -1.9 4-hydroxy-2-oxoheptanedioate aldolase compare
BNILDI_05285 -0.8 -0.5 Uncharacterized protein YshB compare
BNILDI_08435 surA -0.8 -2.4 peptidylprolyl isomerase SurA compare
BNILDI_21590 Met_trna -0.8 -0.5 tRNA-Met(cat) compare
BNILDI_15280 yecR -0.8 -1.5 Uncharacterized protein YecR compare
BNILDI_10405 recC -0.8 -1.3 exodeoxyribonuclease V subunit gamma compare
BNILDI_22680 clpX -0.8 -1.8 ATP-dependent protease ATP-binding subunit ClpX compare
BNILDI_19510 -0.8 -1.4 Uncharacterized protein YmdA compare
BNILDI_05710 metJ -0.8 -2.2 met regulon transcriptional regulator MetJ compare
BNILDI_07310 fbp -0.8 -4.1 class 1 fructose-bisphosphatase compare
BNILDI_02440 yheV -0.8 -1.2 Uncharacterized protein YheV compare
BNILDI_00325 yafQ -0.8 -1.9 type II toxin-antitoxin system mRNA interferase toxin YafQ compare
BNILDI_12500 eutS -0.8 -2.6 Bacterial microcompartment shell protein EutS compare
BNILDI_09265 metQ -0.8 -3.6 methionine ABC transporter substrate-binding lipoprotein MetQ compare
BNILDI_03970 waaO -0.8 -2.1 lipopolysaccharide 3-alpha-galactosyltransferase compare
BNILDI_03980 rfaG -0.8 -1.2 Lipopolysaccharide core biosynthesis protein RfaG compare
BNILDI_14340 yegW -0.7 -2.4 Uncharacterized HTH-type transcriptional regulator YegW compare
BNILDI_08245 nhaA -0.7 -2.6 Na+/H+ antiporter NhaA compare
BNILDI_05280 hemN -0.7 -2.8 oxygen-independent coproporphyrinogen III oxidase compare
BNILDI_21315 sdhB -0.7 -1.2 succinate dehydrogenase iron-sulfur subunit SdhB compare
BNILDI_02165 aroE -0.7 -2.7 shikimate dehydrogenase compare
BNILDI_12455 ypfM -0.7 -0.6 protein YpfM compare
BNILDI_19110 potC -0.7 -1.8 spermidine/putrescine ABC transporter permease PotC compare
BNILDI_18355 osmB -0.7 -0.7 osmotically-inducible lipoprotein OsmB compare
BNILDI_12935 yfdX -0.7 -3.3 Protein YfdX compare
BNILDI_02890 yhhY -0.7 -2.1 N-acetyltransferase compare
BNILDI_12980 emrY -0.7 -1.7 multidrug efflux MFS transporter permease subunit EmrY compare
BNILDI_11395 -0.7 -0.6 hypothetical protein compare
BNILDI_16440 ydiE -0.7 -1.2 Uncharacterized protein YdiE compare
BNILDI_18620 rssB -0.7 -2.4 two-component system response regulator RssB compare
BNILDI_04085 trmH -0.7 -1.6 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
BNILDI_11835 srmB -0.7 -2.9 ATP-dependent RNA helicase SrmB compare
BNILDI_18295 sapA -0.7 -1.6 peptide ABC transporter substrate-binding protein SapA compare
BNILDI_17110 ydfJ -0.7 -2.5 MHS family MFS transporter YdfJ compare
BNILDI_22345 allA -0.7 -1.5 ureidoglycolate lyase compare
BNILDI_07415 -0.7 -1.0 DNA-binding protein compare
BNILDI_00650 -0.7 -2.3 Ybl138 compare
BNILDI_08980 dksA -0.7 -3.0 RNA polymerase-binding protein DksA compare
BNILDI_19185 ndh -0.7 -2.8 NADH-quinone dehydrogenase compare
BNILDI_21300 sucC -0.7 -2.6 ADP-forming succinate--CoA ligase subunit beta compare


Specific Phenotypes

For 7 genes in this experiment

For phage MOI 10 in Escherichia coli ECRC62

For phage MOI 10 across organisms