Experiment set1S401 for Escherichia coli HS(pFamp)R (ATCC 700891)

Compare to:

T6 MOI1

200 most important genes:

  gene name fitness t score description  
OHPLBJKB_01652 -4.5 -3.1 hypothetical protein compare
OHPLBJKB_01663 -3.3 -3.1 dTDP-4-dehydrorhamnose 3,5-epimerase compare
OHPLBJKB_02990 -3.2 -3.6 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
OHPLBJKB_01662 -3.1 -5.9 dTDP-4-dehydrorhamnose reductase compare
OHPLBJKB_01653 -2.9 -2.8 hypothetical protein compare
OHPLBJKB_03543 -2.7 -2.6 Aconitate hydratase B compare
OHPLBJKB_02780 -2.7 -3.1 Thioredoxin reductase compare
OHPLBJKB_04276 -2.4 -2.3 ATP-dependent DNA helicase Rep compare
OHPLBJKB_04356 -2.4 -3.1 hypothetical protein compare
OHPLBJKB_02496 -2.4 -3.1 Murein tetrapeptide carboxypeptidase compare
OHPLBJKB_03501 -2.1 -3.1 Periplasmic serine endoprotease DegP compare
OHPLBJKB_01429 -2.0 -5.5 NADH-quinone oxidoreductase subunit M compare
OHPLBJKB_03607 -1.8 -6.4 'Bis(5'-nucleosyl)-tetraphosphatase, symmetrical' transl_table=11 compare
OHPLBJKB_00108 -1.8 -2.3 Protein YibA compare
OHPLBJKB_01035 -1.7 -2.9 Protein RecA compare
OHPLBJKB_00071 -1.6 -1.8 Lipopolysaccharide core biosynthesis protein RfaG compare
OHPLBJKB_00210 -1.6 -4.5 Low-affinity inorganic phosphate transporter 1 compare
OHPLBJKB_03461 -1.6 -2.7 D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase compare
OHPLBJKB_02975 -1.6 -3.2 Protein TolR compare
OHPLBJKB_04204 -1.5 -3.8 Trk system potassium uptake protein TrkH compare
OHPLBJKB_00821 -1.4 -3.3 Tyrosine recombinase XerD compare
OHPLBJKB_03605 -1.4 -3.9 Ribosomal RNA small subunit methyltransferase A compare
OHPLBJKB_03865 -1.4 -2.8 Adenylosuccinate synthetase compare
OHPLBJKB_04164 -1.4 -2.7 hypothetical protein compare
OHPLBJKB_03885 -1.3 -5.1 Elongation factor P--(R)-beta-lysine ligase compare
OHPLBJKB_00490 -1.2 -3.1 Aerobic respiration control sensor protein ArcB compare
OHPLBJKB_01131 -1.2 -6.8 ATP-dependent RNA helicase SrmB compare
OHPLBJKB_02347 -1.2 -3.0 Methylated-DNA--protein-cysteine methyltransferase compare
OHPLBJKB_02856 -1.2 -1.9 hypothetical protein compare
OHPLBJKB_01650 -1.2 -1.7 putative low molecular weight protein-tyrosine-phosphatase AmsI compare
OHPLBJKB_01779 -1.2 -1.7 hypothetical protein compare
OHPLBJKB_00809 -1.1 -2.8 2-octaprenylphenol hydroxylase compare
OHPLBJKB_01423 -1.1 -4.6 NADH-quinone oxidoreductase subunit G compare
OHPLBJKB_04239 -1.1 -2.4 Tyrosine recombinase XerC compare
OHPLBJKB_00278 -1.1 -5.6 Aerobic glycerol-3-phosphate dehydrogenase compare
OHPLBJKB_02410 -1.1 -3.3 DNA topoisomerase 1 compare
OHPLBJKB_01196 -1.1 -3.1 hypothetical protein compare
OHPLBJKB_03579 -1.1 -4.9 Catabolite repressor/activator compare
OHPLBJKB_02578 -1.1 -2.3 Large ribosomal RNA subunit accumulation protein YceD compare
OHPLBJKB_04088 -1.1 -2.1 Soluble pyridine nucleotide transhydrogenase compare
OHPLBJKB_01799 -1.0 -2.0 Putative sulfur carrier protein YedF compare
OHPLBJKB_02031 -1.0 -2.3 3-dehydroquinate dehydratase compare
OHPLBJKB_01428 -1.0 -3.9 NADH-quinone oxidoreductase subunit L compare
OHPLBJKB_04209 -1.0 -5.1 NAD(P)H-flavin reductase compare
OHPLBJKB_02973 -1.0 -5.0 Protein TolB compare
OHPLBJKB_01358 -1.0 -2.4 tRNA-Arg compare
OHPLBJKB_02484 -1.0 -1.8 Ribosome-binding ATPase YchF compare
OHPLBJKB_00471 -1.0 -2.0 Inner membrane protein YhcB compare
OHPLBJKB_02094 -1.0 -2.2 Electron transport complex subunit RsxE compare
OHPLBJKB_00872 -1.0 -2.0 hypothetical protein compare
OHPLBJKB_01475 -1.0 -1.9 hypothetical protein compare
OHPLBJKB_02972 -0.9 -3.3 Peptidoglycan-associated lipoprotein compare
OHPLBJKB_03896 -0.9 -4.8 L-lysine 2,3-aminomutase compare
OHPLBJKB_01430 -0.9 -3.1 NADH-quinone oxidoreductase subunit N compare
OHPLBJKB_04326 -0.9 -3.5 Phosphate transport system permease protein PstC compare
OHPLBJKB_04135 -0.9 -3.6 ATP-dependent 6-phosphofructokinase isozyme 1 compare
OHPLBJKB_04235 -0.9 -1.8 Magnesium transport protein CorA compare
OHPLBJKB_03218 -0.9 -1.5 putative protein YbaA compare
OHPLBJKB_00496 -0.9 -2.2 Nitrogen regulatory protein compare
OHPLBJKB_04361 -0.9 -2.7 hypothetical protein compare
OHPLBJKB_01424 -0.8 -2.4 NADH-quinone oxidoreductase subunit H compare
OHPLBJKB_03032 -0.8 -1.6 Ferric uptake regulation protein compare
OHPLBJKB_01422 -0.8 -2.6 NADH-quinone oxidoreductase subunit F compare
OHPLBJKB_00298 -0.8 -2.4 Transcriptional regulatory protein OmpR compare
OHPLBJKB_00538 -0.8 -3.5 ATP-dependent RNA helicase DeaD compare
OHPLBJKB_02974 -0.8 -3.2 Protein TolA compare
OHPLBJKB_02047 -0.8 -1.5 Major outer membrane prolipoprotein Lpp compare
OHPLBJKB_04325 -0.8 -4.1 Phosphate-binding protein PstS compare
OHPLBJKB_01649 -0.8 -4.4 hypothetical protein compare
OHPLBJKB_00316 -0.8 -2.7 DNA adenine methylase compare
OHPLBJKB_03422 -0.8 -1.8 hypothetical protein compare
OHPLBJKB_00314 -0.8 -3.5 3-dehydroquinate synthase compare
OHPLBJKB_01316 -0.8 -2.7 hypothetical protein compare
OHPLBJKB_00149 -0.8 -1.8 Protein HokA compare
OHPLBJKB_01725 -0.8 -1.8 putative transcriptional regulatory protein YeeN compare
OHPLBJKB_02840 -0.8 -2.2 hypothetical protein compare
OHPLBJKB_01201 -0.7 -2.4 'Inosine-5'-monophosphate dehydrogenase' transl_table=11 compare
OHPLBJKB_03236 -0.7 -3.8 ATP-dependent Clp protease proteolytic subunit compare
OHPLBJKB_04367 -0.7 -1.3 hypothetical protein compare
OHPLBJKB_01795 -0.7 -2.6 HTH-type transcriptional activator RhaS compare
OHPLBJKB_03637 -0.7 -2.2 Outer membrane usher protein YehB compare
OHPLBJKB_02435 -0.7 -1.2 hypothetical protein compare
OHPLBJKB_01427 -0.7 -1.8 NADH-quinone oxidoreductase subunit K compare
OHPLBJKB_04139 -0.7 -3.3 Sensor histidine kinase CpxA compare
OHPLBJKB_00072 -0.7 -2.0 Lipopolysaccharide core heptose(I) kinase RfaP compare
OHPLBJKB_00289 -0.7 -2.4 Fe/S biogenesis protein NfuA compare
OHPLBJKB_03642 -0.7 -3.7 Na(+)/H(+) antiporter NhaA compare
OHPLBJKB_00871 -0.7 -2.3 Transcriptional regulatory protein LiaR compare
OHPLBJKB_01138 -0.7 -2.7 Elongation factor 4 compare
OHPLBJKB_01418 -0.7 -1.2 NAD(P)H-quinone oxidoreductase subunit 3 compare
OHPLBJKB_02954 -0.7 -2.4 UDP-glucose 4-epimerase compare
OHPLBJKB_01386 -0.7 -1.5 USG-1 protein compare
OHPLBJKB_02850 -0.7 -1.1 hypothetical protein compare
OHPLBJKB_01420 -0.7 -2.3 NADH-quinone oxidoreductase subunit C/D compare
OHPLBJKB_01087 -0.7 -2.1 SsrA-binding protein compare
OHPLBJKB_01435 -0.7 -1.9 hypothetical protein compare
OHPLBJKB_02077 -0.7 -1.9 hypothetical protein compare
OHPLBJKB_00681 -0.7 -2.0 Antitoxin MqsA compare
OHPLBJKB_02445 -0.7 -1.2 IS4 family transposase ISCro3 compare
OHPLBJKB_00631 -0.7 -2.2 Transcriptional regulator YqjI compare
OHPLBJKB_01756 -0.6 -0.7 Metal-binding protein ZinT compare
OHPLBJKB_02214 -0.6 -1.2 Protein FimG compare
OHPLBJKB_04354 -0.6 -1.2 Outer membrane protease OmpP compare
OHPLBJKB_04353 -0.6 -2.6 Carboxylesterase A compare
OHPLBJKB_02305 -0.6 -1.4 hypothetical protein compare
OHPLBJKB_04193 -0.6 -2.7 Thiol:disulfide interchange protein DsbA compare
OHPLBJKB_02033 -0.6 -1.4 Inner membrane transport protein YdiN compare
OHPLBJKB_00572 -0.6 -3.3 Glucitol operon repressor compare
OHPLBJKB_02099 -0.6 -1.6 Electron transport complex subunit RsxA compare
OHPLBJKB_04314 -0.6 -2.2 ATP synthase protein I compare
OHPLBJKB_01253 -0.6 -0.8 hypothetical protein compare
OHPLBJKB_02071 -0.6 -1.9 Glutaredoxin 4 compare
OHPLBJKB_03656 -0.6 -2.8 Threonine synthase compare
OHPLBJKB_02877 -0.6 -1.5 hypothetical protein compare
OHPLBJKB_00536 -0.6 -3.5 Polyribonucleotide nucleotidyltransferase compare
OHPLBJKB_04433 -0.6 -1.4 hypothetical protein compare
OHPLBJKB_04237 -0.6 -4.1 DNA helicase II compare
OHPLBJKB_02876 -0.6 -1.6 hypothetical protein compare
OHPLBJKB_03381 -0.6 -1.3 Right origin-binding protein compare
OHPLBJKB_01979 -0.6 -2.2 hypothetical protein compare
OHPLBJKB_02132 -0.6 -2.3 Protein mlc compare
OHPLBJKB_00531 -0.6 -1.5 Transcription termination/antitermination protein NusA compare
OHPLBJKB_01135 -0.6 -1.1 Anti-sigma-E factor RseA compare
OHPLBJKB_00908 -0.6 -1.1 RecBCD enzyme subunit RecC compare
OHPLBJKB_00422 -0.6 -2.5 Shikimate dehydrogenase (NADP(+)) compare
OHPLBJKB_03805 -0.6 -1.1 Inner membrane ABC transporter permease protein YtfT compare
OHPLBJKB_01647 -0.6 -1.3 IS1 family transposase IS1X4 compare
OHPLBJKB_02976 -0.6 -1.9 Protein TolQ compare
OHPLBJKB_00353 -0.6 -1.5 hypothetical protein compare
OHPLBJKB_04327 -0.5 -2.3 Phosphate transport system permease protein PstA compare
OHPLBJKB_04432 -0.5 -1.8 hypothetical protein compare
OHPLBJKB_03233 -0.5 -2.4 DNA-binding protein HU-beta compare
OHPLBJKB_04393 -0.5 -0.6 hypothetical protein compare
OHPLBJKB_01387 -0.5 -1.3 tRNA pseudouridine synthase A compare
OHPLBJKB_03413 -0.5 -0.9 Antitoxin DinJ compare
OHPLBJKB_00059 -0.5 -2.3 Ribonuclease PH compare
OHPLBJKB_00519 -0.5 -1.0 Transcription elongation factor GreA compare
OHPLBJKB_00220 -0.5 -0.7 putative protein YbbC compare
OHPLBJKB_00098 -0.5 -2.0 Inner membrane lipoprotein SadB compare
OHPLBJKB_01090 -0.5 -3.2 Outer membrane protein assembly factor BamE compare
OHPLBJKB_02428 -0.5 -1.3 hypothetical protein compare
OHPLBJKB_00467 -0.5 -2.2 Arginine repressor compare
OHPLBJKB_03640 -0.5 -1.9 hypothetical protein compare
OHPLBJKB_00862 -0.5 -1.6 hypothetical protein compare
OHPLBJKB_01881 -0.5 -1.0 hypothetical protein compare
OHPLBJKB_00092 -0.5 -1.2 Serine acetyltransferase compare
OHPLBJKB_01426 -0.5 -0.9 NADH-quinone oxidoreductase subunit J compare
OHPLBJKB_03442 -0.5 -0.8 hypothetical protein compare
OHPLBJKB_01027 -0.5 -3.5 Glucitol operon repressor compare
OHPLBJKB_04120 -0.5 -2.1 ATP-dependent protease ATPase subunit HslU compare
OHPLBJKB_01045 -0.5 -3.7 Glutamate--cysteine ligase compare
OHPLBJKB_04137 -0.5 -2.5 Periplasmic protein CpxP compare
OHPLBJKB_02870 -0.5 -2.2 Deoxyribose operon repressor compare
OHPLBJKB_02095 -0.5 -1.9 Electron transport complex subunit RsxG compare
OHPLBJKB_03867 -0.5 -2.4 Modulator of FtsH protease HflC compare
OHPLBJKB_02648 -0.5 -2.0 Deferrochelatase/peroxidase EfeB compare
OHPLBJKB_02864 -0.5 -2.1 HTH-type transcriptional regulator RcdA compare
OHPLBJKB_01702 -0.5 -1.5 hypothetical protein compare
OHPLBJKB_00800 -0.5 -2.3 HTH-type transcriptional regulator ArgP compare
OHPLBJKB_02448 -0.5 -0.7 DNA-binding protein H-NS compare
OHPLBJKB_00878 -0.5 -0.8 hypothetical protein compare
OHPLBJKB_02397 -0.5 -1.6 hypothetical protein compare
OHPLBJKB_01567 -0.5 -2.1 hypothetical protein compare
OHPLBJKB_01506 -0.5 -1.8 Ferredoxin-type protein NapG compare
OHPLBJKB_00806 -0.5 -1.6 hypothetical protein compare
OHPLBJKB_04382 -0.5 -2.6 tRNA(fMet)-specific endonuclease VapC compare
OHPLBJKB_02395 -0.5 -2.2 Exoribonuclease 2 compare
OHPLBJKB_01143 -0.5 -1.5 'Pyridoxine 5'-phosphate synthase' transl_table=11 compare
OHPLBJKB_03129 -0.4 -1.4 hypothetical protein compare
OHPLBJKB_01902 -0.4 -1.9 Protease HtpX compare
OHPLBJKB_00706 -0.4 -1.6 Hydrogenase 2 maturation protease compare
OHPLBJKB_02605 -0.4 -2.0 Biofilm regulator BssS compare
OHPLBJKB_02362 -0.4 -1.4 HTH-type transcriptional repressor PurR compare
OHPLBJKB_02473 -0.4 -2.4 hypothetical protein compare
OHPLBJKB_02995 -0.4 -1.3 Succinate dehydrogenase cytochrome b556 subunit compare
OHPLBJKB_02977 -0.4 -2.1 Acyl-CoA thioester hydrolase YbgC compare
OHPLBJKB_00102 -0.4 -1.9 Mannitol-1-phosphate 5-dehydrogenase compare
OHPLBJKB_03464 -0.4 -2.9 D-methionine-binding lipoprotein MetQ compare
OHPLBJKB_02141 -0.4 -1.5 hypothetical protein compare
OHPLBJKB_00820 -0.4 -2.2 Flavodoxin 2 compare
OHPLBJKB_03172 -0.4 -1.2 Hydroxypyruvate isomerase compare
OHPLBJKB_03271 -0.4 -1.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
OHPLBJKB_03193 -0.4 -2.2 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK compare
OHPLBJKB_00257 -0.4 -1.5 hypothetical protein compare
OHPLBJKB_00420 -0.4 -2.1 DNA topoisomerase 1 compare
OHPLBJKB_04313 -0.4 -2.8 Ribosomal RNA small subunit methyltransferase G compare
OHPLBJKB_00199 -0.4 -1.1 Arsenate reductase compare
OHPLBJKB_00077 -0.4 -1.0 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
OHPLBJKB_04384 -0.4 -2.5 Lipoprotein YlpA compare
OHPLBJKB_01885 -0.4 -1.3 Inner membrane protein YebE compare
OHPLBJKB_03687 -0.4 -2.9 Peptide chain release factor RF3 compare
OHPLBJKB_01761 -0.4 -1.8 putative sensor-like histidine kinase YedV compare
OHPLBJKB_02157 -0.4 -1.4 Lysozyme RrrD compare
OHPLBJKB_03751 -0.4 -1.6 Chaperone protein FimC compare
OHPLBJKB_01425 -0.4 -0.9 NADH-quinone oxidoreductase subunit I compare
OHPLBJKB_03231 -0.4 -1.8 hypothetical protein compare
OHPLBJKB_03864 -0.4 -2.1 HTH-type transcriptional repressor NsrR compare
OHPLBJKB_00367 -0.4 -1.8 Bacterioferritin compare
OHPLBJKB_02498 -0.4 -0.8 hypothetical protein compare
OHPLBJKB_04098 -0.4 -1.4 Benzylsuccinate synthase activating enzyme compare


Specific Phenotypes

None in this experiment

For Escherichia coli HS(pFamp)R (ATCC 700891) in phage experiments