Experiment set1S31 for Pseudomonas sp. DMC3

Compare to:

D-Glucose and Sodium D,L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
GFF1841 -5.9 -4.1 ATP phosphoribosyltransferase compare
GFF3103 -5.3 -6.3 Glutamate synthase [NADPH] small chain compare
GFF16 -5.1 -6.0 Indole-3-glycerol phosphate synthase compare
GFF1604 -5.0 -9.1 putative branched-chain-amino-acid aminotransferase compare
GFF4081 -5.0 -6.8 DNA-binding transcriptional regulator NtrC compare
GFF5246 -4.9 -4.7 Assimilatory nitrite reductase [NAD(P)H] small subunit compare
GFF786 -4.9 -3.4 3-isopropylmalate dehydratase small subunit 1 compare
GFF3224 -4.9 -6.6 ATP phosphoribosyltransferase regulatory subunit compare
GFF1304 -4.8 -10.3 Transaldolase B compare
GFF793 -4.8 -10.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
GFF4052 -4.7 -9.1 Ketol-acid reductoisomerase (NADP(+)) compare
GFF2051 -4.7 -9.9 Bifunctional uridylyltransferase/uridylyl-removing enzyme compare
GFF17 -4.6 -6.3 Anthranilate phosphoribosyltransferase compare
GFF785 -4.5 -6.2 3-isopropylmalate dehydratase large subunit compare
GFF3102 -4.5 -15.0 Glutamate synthase [NADPH] large chain compare
GFF20 -4.5 -11.5 Anthranilate synthase component 1 compare
GFF407 -4.4 -5.3 Acetylglutamate kinase compare
GFF4080 -4.4 -4.3 Sensory histidine kinase/phosphatase NtrB compare
GFF798 -4.4 -8.5 Amidophosphoribosyltransferase compare
GFF301 -4.4 -6.0 Amino-acid acetyltransferase compare
GFF5 -4.4 -6.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
GFF1535 -4.4 -6.6 Siroheme synthase compare
GFF4098 -4.3 -9.1 Imidazole glycerol phosphate synthase subunit HisH compare
GFF4099 -4.3 -9.9 Histidine biosynthesis bifunctional protein HisB compare
GFF5102 -4.2 -15.6 Ornithine carbamoyltransferase 1, anabolic compare
GFF246 -4.2 -8.4 Dihydroxy-acid dehydratase compare
GFF799 -4.1 -7.9 O-succinylhomoserine sulfhydrylase compare
GFF788 -4.1 -8.3 3-isopropylmalate dehydrogenase compare
GFF4096 -4.1 -5.6 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino] imidazole-4-carboxamide isomerase compare
GFF212 -4.1 -10.5 Homoserine O-succinyltransferase compare
GFF5092 -4.1 -8.7 Argininosuccinate synthase compare
GFF3308 -4.1 -5.6 Bifunctional purine biosynthesis protein PurH compare
GFF274 -4.0 -6.7 D-3-phosphoglycerate dehydrogenase compare
GFF1962 -3.9 -4.7 Phosphoribosylformylglycinamidine synthase compare
GFF359 -3.9 -6.0 Argininosuccinate lyase compare
GFF1842 -3.9 -12.0 Histidinol dehydrogenase compare
GFF2539 -3.9 -5.3 Phosphoribosylformylglycinamidine cyclo-ligase compare
GFF213 -3.9 -7.8 Bifunctional methionine biosynthesis protein MetXA/MetW compare
GFF677 -3.9 -4.6 Tryptophan synthase alpha chain compare
GFF4095 -3.9 -3.9 Imidazole glycerol phosphate synthase subunit HisF compare
GFF264 -3.7 -10.1 Phosphoenolpyruvate-dependent phosphotransferase system compare
GFF3693 -3.7 -7.8 hypothetical protein compare
GFF2289 -3.7 -2.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
GFF171 -3.7 -5.1 5,10-methylenetetrahydrofolate reductase compare
GFF5245 -3.7 -12.6 Nitrate reductase compare
GFF4050 -3.7 -3.6 Acetolactate synthase isozyme 3 large subunit compare
GFF3073 -3.6 -3.5 Phosphoribosyl-AMP cyclohydrolase compare
GFF676 -3.6 -6.5 Tryptophan synthase beta chain compare
GFF3196 -3.6 -5.5 Phosphoserine phosphatase SerB2 compare
GFF506 -3.5 -13.8 Oxaloacetate decarboxylase alpha chain compare
GFF5139 -3.5 -3.4 6-phosphogluconolactonase compare
GFF5247 -3.5 -15.7 Nitrite reductase [NAD(P)H] compare
GFF1839 -3.4 -4.0 putative protein compare
GFF4489 -3.4 -4.2 Molybdopterin-synthase adenylyltransferase compare
GFF2677 -3.4 -5.2 Phosphoadenosine phosphosulfate reductase compare
GFF18 -3.4 -4.5 Anthranilate synthase component 2 compare
GFF3307 -3.3 -3.2 Phosphoribosylamine--glycine ligase compare
GFF3692 -3.3 -9.7 Sulfite reductase [ferredoxin] compare
GFF5250 -3.2 -8.7 putative transcriptional regulatory protein pdtaR compare
GFF1824 -3.2 -4.2 Phosphocarrier protein NPr compare
GFF507 -3.1 -10.6 2-oxoglutarate carboxylase small subunit compare
GFF485 -3.1 -3.6 N5-carboxyaminoimidazole ribonucleotide synthase compare
GFF5243 -3.0 -4.0 Outer membrane porin F compare
GFF4818 -2.9 -10.5 GTP pyrophosphokinase compare
GFF508 -2.9 -9.7 HTH-type transcriptional activator CmpR compare
GFF4878 -2.9 -10.3 Arginine N-succinyltransferase subunit alpha compare
GFF411 -2.8 -1.9 Orotate phosphoribosyltransferase compare
GFF3171 -2.8 -2.7 D-inositol-3-phosphate glycosyltransferase compare
GFF1927 -2.8 -3.7 Molybdopterin synthase catalytic subunit compare
GFF3166 -2.7 -3.6 D-inositol-3-phosphate glycosyltransferase compare
GFF4914 -2.5 -1.7 RecBCD enzyme subunit RecD compare
GFF4913 -2.5 -3.4 RecBCD enzyme subunit RecB compare
GFF4025 -2.5 -6.9 Glucose-6-phosphate isomerase compare
GFF2282 -2.5 -2.2 Sulfur carrier protein TusA compare
GFF4147 -2.5 -3.0 hypothetical protein compare
GFF4573 -2.5 -9.0 Molybdopterin molybdenumtransferase compare
GFF4030 -2.4 -5.3 Transcriptional regulatory protein ZraR compare
GFF4575 -2.3 -3.5 Molybdenum cofactor guanylyltransferase compare
GFF4051 -2.3 -8.6 Acetolactate synthase isozyme 3 small subunit compare
GFF1848 -2.2 -9.7 Sulfate adenylyltransferase subunit 2 compare
GFF1831 -2.2 -3.3 Lipopolysaccharide export system protein LptC compare
GFF5185 -2.2 -2.4 Holliday junction ATP-dependent DNA helicase RuvA compare
GFF1444 -2.2 -3.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF3169 -2.1 -6.3 hypothetical protein compare
GFF5249 -2.1 -7.8 Nitrate transporter compare
GFF4332 -2.1 -5.7 2-isopropylmalate synthase compare
GFF44 -2.1 -2.6 Multifunctional CCA protein compare
GFF2161 -2.0 -3.0 ATP-dependent DNA helicase DinG compare
GFF4287 -1.9 -7.5 hypothetical protein compare
GFF4820 -1.9 -5.6 Cysteine synthase B compare
GFF1849 -1.9 -8.7 Bifunctional enzyme CysN/CysC compare
GFF266 -1.8 -9.0 putative phosphatase compare
GFF3072 -1.8 -4.4 Phosphoribosyl-ATP pyrophosphatase compare
GFF4148 -1.8 -6.5 Inner membrane protein YgaZ compare
GFF5184 -1.8 -3.4 Holliday junction ATP-dependent DNA helicase RuvB compare
GFF4034 -1.8 -5.1 RNA polymerase-binding transcription factor DksA compare
GFF4574 -1.8 -1.7 Molybdenum cofactor biosynthesis protein B compare
GFF2012 -1.7 -4.9 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
GFF4693 -1.7 -1.7 Fumarate hydratase class II compare
GFF5140 -1.7 -5.5 Glucose-6-phosphate 1-dehydrogenase compare
GFF4617 -1.6 -8.6 HTH-type transcriptional regulator CysB compare
GFF3120 -1.6 -1.6 hypothetical protein compare
GFF5152 -1.6 -7.2 Phosphogluconate dehydratase compare
GFF2538 -1.6 -5.8 Phosphoribosylglycinamide formyltransferase compare
GFF2945 -1.6 -7.5 UTP--glucose-1-phosphate uridylyltransferase compare
GFF3341 -1.5 -2.5 hypothetical protein compare
GFF5251 -1.5 -5.2 Nitrate/nitrite binding protein NrtA compare
GFF4912 -1.5 -5.8 RecBCD enzyme subunit RecC compare
GFF2454 -1.4 -7.1 STAS-domain containing protein compare
GFF1443 -1.4 -3.9 ATP-dependent Clp protease proteolytic subunit compare
GFF1651 -1.4 -4.2 Sensor histidine kinase RcsC compare
GFF2143 -1.4 -2.8 Histidine transport ATP-binding protein HisP compare
GFF4394 -1.4 -2.5 Cytochrome bo(3) ubiquinol oxidase subunit 1 compare
GFF4126 -1.3 -4.0 ATP-dependent zinc metalloprotease FtsH compare
GFF2111 -1.3 -2.9 Protein RecA compare
GFF418 -1.3 -2.0 DNA-directed RNA polymerase subunit omega compare
GFF3337 -1.3 -2.0 hypothetical protein compare
GFF420 -1.3 -4.0 2-iminobutanoate/2-iminopropanoate deaminase compare
GFF4103 -1.3 -2.3 putative Fe(2+)-trafficking protein compare
GFF2295 -1.3 -1.5 hypothetical protein compare
GFF2287 -1.3 -4.6 Outer membrane protein assembly factor BamC compare
GFF481 -1.2 -2.6 putative acyl-CoA thioester hydrolase compare
GFF3687 -1.2 -6.2 Methionine synthase compare
GFF4186 -1.2 -3.4 Glutamate--cysteine ligase compare
GFF2471 -1.2 -2.4 Flagellum site-determining protein YlxH compare
GFF3747 -1.2 -2.1 Bifunctional ligase/repressor BirA compare
GFF1938 -1.2 -1.7 hypothetical protein compare
GFF3356 -1.2 -4.8 Copper-exporting P-type ATPase compare
GFF334 -1.2 -2.3 Glutamine transport ATP-binding protein GlnQ compare
GFF5244 -1.2 -5.8 Uroporphyrinogen-III C-methyltransferase compare
GFF4877 -1.2 -4.0 Arginine N-succinyltransferase subunit beta compare
GFF2958 -1.2 -4.7 Molybdenum transport system permease protein ModB compare
GFF1813 -1.2 -3.1 Ribonuclease G compare
GFF1275 -1.2 -5.6 hypothetical protein compare
GFF4660 -1.1 -4.0 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
GFF773 -1.1 -5.8 Aromatic-amino-acid aminotransferase compare
GFF2209 -1.1 -1.4 hypothetical protein compare
GFF5269 -1.1 -1.4 HTH-type transcriptional regulator YhaJ compare
GFF3282 -1.1 -3.2 Urease accessory protein UreD compare
GFF5150 -1.1 -2.1 Transcriptional regulatory protein OmpR compare
GFF4512 -1.1 -1.3 hypothetical protein compare
GFF5186 -1.0 -2.6 Crossover junction endodeoxyribonuclease RuvC compare
GFF1530 -1.0 -2.9 DNA translocase FtsK compare
GFF2356 -1.0 -1.9 hypothetical protein compare
GFF4493 -1.0 -3.4 Beta-barrel assembly-enhancing protease compare
GFF4091 -1.0 -3.9 Carboxy-terminal processing protease CtpB compare
GFF39 -1.0 -3.2 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
GFF2280 -1.0 -2.5 Periplasmic serine endoprotease DegP compare
GFF713 -0.9 -5.7 Oxygen-independent coproporphyrinogen III oxidase compare
GFF2050 -0.9 -4.7 LL-diaminopimelate aminotransferase compare
GFF268 -0.9 -6.2 L-threonine dehydratase biosynthetic IlvA compare
GFF265 -0.9 -3.6 RNA pyrophosphohydrolase compare
GFF4443 -0.9 -3.5 Cell division protein ZapE compare
GFF662 -0.9 -1.9 hypothetical protein compare
GFF4337 -0.9 -0.9 hypothetical protein compare
GFF13 -0.9 -3.3 Protein YhfA compare
GFF3229 -0.9 -3.7 Ribonuclease R compare
GFF3092 -0.9 -4.6 NADP-dependent malic enzyme compare
GFF2248 -0.9 -1.4 hypothetical protein compare
GFF3084 -0.9 -2.8 hypothetical protein compare
GFF4755 -0.9 -4.1 3-oxoacyl-[acyl-carrier-protein] synthase 2 compare
GFF2191 -0.9 -2.3 hypothetical protein compare
GFF4146 -0.9 -2.4 hypothetical protein compare
GFF320 -0.9 -4.9 5-formyltetrahydrofolate cyclo-ligase compare
GFF3572 -0.9 -2.6 UDP-Gal:alpha-D-GlcNAc-diphosphoundecaprenol beta-1,4-galactosyltransferase compare
GFF4097 -0.8 -2.9 hypothetical protein compare
GFF692 -0.8 -1.4 HTH-type transcriptional repressor RspR compare
GFF3544 -0.8 -2.4 hypothetical protein compare
GFF4759 -0.8 -4.1 Phosphate acyltransferase compare
GFF841 -0.8 -1.6 hypothetical protein compare
GFF374 -0.8 -3.0 Ammonia channel compare
GFF4565 -0.8 -1.8 Pyrimidine/purine nucleoside phosphorylase compare
GFF2957 -0.8 -3.9 Molybdate-binding protein ModA compare
GFF1791 -0.8 -1.8 hypothetical protein compare
GFF335 -0.8 -3.2 Exopolyphosphatase compare
GFF238 -0.8 -2.1 hypothetical protein compare
GFF2796 -0.8 -2.7 HTH-type transcriptional repressor NemR compare
GFF336 -0.8 -6.0 Polyphosphate kinase compare
GFF5172 -0.8 -2.0 Major cold shock protein CspA compare
GFF5054 -0.8 -2.4 HTH-type transcriptional activator RhaS compare
GFF4161 -0.8 -2.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
GFF1391 -0.8 -1.7 hypothetical protein compare
GFF1890 -0.8 -1.6 hypothetical protein compare
GFF3306 -0.8 -4.2 Sensor histidine kinase RcsC compare
GFF2891 -0.8 -1.1 Sensor kinase CckA compare
GFF4376 -0.8 -2.2 hypothetical protein compare
GFF229 -0.7 -2.1 Ribosomal RNA small subunit methyltransferase D compare
GFF1598 -0.7 -2.0 hypothetical protein compare
GFF1975 -0.7 -1.5 hypothetical protein compare
GFF389 -0.7 -2.1 2-iminobutanoate/2-iminopropanoate deaminase compare
GFF2627 -0.7 -1.7 hypothetical protein compare
GFF4336 -0.7 -1.4 Outer membrane protein assembly factor BamB compare
GFF4408 -0.7 -2.6 Adaptive-response sensory-kinase SasA compare
GFF2323 -0.7 -1.5 Putative glutamine amidotransferase YafJ compare
GFF71 -0.7 -2.3 hypothetical protein compare
GFF3513 -0.7 -3.2 hypothetical protein compare
GFF1417 -0.7 -1.1 hypothetical protein compare
GFF4965 -0.7 -2.5 SsrA-binding protein compare
GFF2151 -0.7 -3.0 Isochorismatase family protein YecD compare
GFF1959 -0.7 -2.3 DNA repair protein RecO compare


Specific Phenotypes

None in this experiment

For Pseudomonas sp. DMC3 in carbon source experiments

For carbon source D-Glucose across organisms