Experiment set1S309 for Pseudomonas sp. SVBP6

Compare to:

Supernatant; Pseudomonas DC3000 grown in LB; 0.1 X

200 most important genes:

  gene name fitness t score description  
COO64_RS17020 dinG -3.2 -2.2 ATP-dependent DNA helicase DinG compare
COO64_RS02680 recB -2.6 -2.5 exodeoxyribonuclease V subunit beta compare
COO64_RS17670 -2.6 -4.5 glycosyltransferase compare
COO64_RS01745 -2.4 -4.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
COO64_RS20100 ruvB -2.3 -4.6 Holliday junction branch migration DNA helicase RuvB compare
COO64_RS22030 -2.2 -2.9 MaoC family dehydratase compare
COO64_RS18650 -2.2 -3.6 sulfite exporter TauE/SafE family protein compare
COO64_RS11480 -2.2 -2.9 HlyD family secretion protein compare
COO64_RS02675 recC -2.2 -4.0 exodeoxyribonuclease V subunit gamma compare
COO64_RS18305 purH -2.1 -4.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
COO64_RS18665 -2.0 -4.3 FixH family protein compare
COO64_RS07295 purM -2.0 -5.7 phosphoribosylformylglycinamidine cyclo-ligase compare
COO64_RS26440 lapG -1.9 -11.0 cysteine protease LapG compare
COO64_RS18660 -1.9 -4.4 heavy metal translocating P-type ATPase compare
COO64_RS16070 -1.9 -5.1 MFS transporter compare
COO64_RS15550 lptE -1.9 -4.1 LPS assembly lipoprotein LptE compare
COO64_RS18655 ccoS -1.8 -4.4 cbb3-type cytochrome oxidase assembly protein CcoS compare
COO64_RS20260 purC -1.8 -5.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
COO64_RS15240 carB -1.7 -6.1 carbamoyl-phosphate synthase large subunit compare
COO64_RS16930 dcd -1.7 -4.8 dCTP deaminase compare
COO64_RS01845 uvrD -1.7 -9.8 DNA helicase II compare
COO64_RS12640 serA -1.7 -7.8 phosphoglycerate dehydrogenase compare
COO64_RS13570 -1.7 -5.5 dihydroorotase compare
COO64_RS04695 purL -1.6 -6.1 phosphoribosylformylglycinamidine synthase compare
COO64_RS13575 -1.6 -5.1 aspartate carbamoyltransferase catalytic subunit compare
COO64_RS19195 clpP -1.6 -3.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
COO64_RS02685 recD -1.6 -3.8 exodeoxyribonuclease V subunit alpha compare
COO64_RS15245 carA -1.6 -3.0 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
COO64_RS21735 rluB -1.5 -4.8 23S rRNA pseudouridine(2605) synthase RluB compare
COO64_RS09410 topA -1.5 -4.8 type I DNA topoisomerase compare
COO64_RS07335 cysM -1.5 -3.0 cysteine synthase CysM compare
COO64_RS01715 -1.5 -5.4 phosphate ABC transporter substrate-binding protein PstS compare
COO64_RS18300 purD -1.4 -4.0 phosphoribosylamine--glycine ligase compare
COO64_RS19000 -1.4 -2.7 DUF4389 domain-containing protein compare
COO64_RS24325 nuoM -1.4 -3.1 NADH-quinone oxidoreductase subunit M compare
COO64_RS03930 ndk -1.3 -2.7 nucleoside-diphosphate kinase compare
COO64_RS11760 -1.3 -2.2 alpha/beta hydrolase compare
COO64_RS09160 -1.3 -2.2 hypothetical protein compare
COO64_RS15235 greA -1.3 -2.2 transcription elongation factor GreA compare
COO64_RS01700 pstB -1.3 -4.0 phosphate ABC transporter ATP-binding protein PstB compare
COO64_RS06575 pyrF -1.3 -2.3 orotidine-5'-phosphate decarboxylase compare
COO64_RS01495 pyrE -1.2 -4.7 orotate phosphoribosyltransferase compare
COO64_RS20090 ruvC -1.2 -3.1 crossover junction endodeoxyribonuclease RuvC compare
COO64_RS13555 -1.2 -1.9 gamma-butyrobetaine hydroxylase-like domain-containing protein compare
COO64_RS24245 -1.2 -1.9 cupin domain-containing protein compare
COO64_RS24295 nuoG -1.2 -4.7 NADH-quinone oxidoreductase subunit NuoG compare
COO64_RS15115 pgi -1.2 -2.5 glucose-6-phosphate isomerase compare
COO64_RS24280 nuoC -1.1 -4.5 NADH-quinone oxidoreductase subunit C/D compare
COO64_RS10605 -1.1 -1.2 hypothetical protein compare
COO64_RS05795 fabF -1.1 -4.7 beta-ketoacyl-ACP synthase II compare
COO64_RS05600 purF -1.1 -7.1 amidophosphoribosyltransferase compare
COO64_RS02495 dsbA -1.1 -4.3 thiol:disulfide interchange protein DsbA compare
COO64_RS13775 -1.0 -1.4 5-carboxymethyl-2-hydroxymuconate Delta-isomerase compare
COO64_RS24305 nuoI -1.0 -2.6 NADH-quinone oxidoreductase subunit NuoI compare
COO64_RS15090 -1.0 -5.7 sigma-54 dependent transcriptional regulator compare
COO64_RS19930 recA -1.0 -4.0 recombinase RecA compare
COO64_RS13325 ntrC -1.0 -3.9 nitrogen regulation protein NR(I) compare
COO64_RS24180 ftsK -1.0 -3.0 DNA translocase FtsK compare
COO64_RS15620 rsfS -1.0 -2.1 ribosome silencing factor compare
COO64_RS07060 -1.0 -3.1 TolC family outer membrane protein compare
COO64_RS04595 pgl -1.0 -1.7 6-phosphogluconolactonase compare
COO64_RS04910 xerD -1.0 -4.2 site-specific tyrosine recombinase XerD compare
COO64_RS13605 gshB -1.0 -3.0 glutathione synthase compare
COO64_RS22420 -1.0 -2.4 aminodeoxychorismate/anthranilate synthase component II compare
COO64_RS08510 -1.0 -1.9 glycine zipper domain-containing protein compare
COO64_RS02000 hcnA -1.0 -1.7 cyanide-forming glycine dehydrogenase subunit HcnA compare
COO64_RS17665 -1.0 -2.2 carbamoyltransferase compare
COO64_RS10490 -0.9 -1.7 hypothetical protein compare
COO64_RS24330 nuoN -0.9 -3.5 NADH-quinone oxidoreductase subunit NuoN compare
COO64_RS11475 -0.9 -3.2 MFS transporter compare
COO64_RS11420 -0.9 -1.8 hypothetical protein compare
COO64_RS01510 rph -0.9 -5.4 ribonuclease PH compare
COO64_RS11150 -0.9 -1.6 tRNA-Thr compare
COO64_RS27575 -0.9 -2.9 cold-shock protein compare
COO64_RS24285 nuoE -0.9 -3.6 NADH-quinone oxidoreductase subunit NuoE compare
COO64_RS24320 nuoL -0.9 -3.1 NADH-quinone oxidoreductase subunit L compare
COO64_RS16545 lepA -0.9 -4.3 translation elongation factor 4 compare
COO64_RS07465 -0.9 -1.6 helix-turn-helix domain-containing protein compare
COO64_RS09985 -0.9 -1.8 response regulator transcription factor compare
COO64_RS18370 aroQ -0.9 -2.5 type II 3-dehydroquinate dehydratase compare
COO64_RS17895 miaA -0.9 -4.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
COO64_RS20415 -0.9 -1.6 hypothetical protein compare
COO64_RS19420 -0.9 -1.4 helix-turn-helix domain-containing protein compare
COO64_RS18515 -0.9 -1.2 GntR family transcriptional regulator compare
COO64_RS03520 nadC -0.8 -1.9 carboxylating nicotinate-nucleotide diphosphorylase compare
COO64_RS01710 -0.8 -5.6 ABC transporter permease subunit compare
COO64_RS17075 -0.8 -3.2 short chain dehydrogenase compare
COO64_RS08350 -0.8 -1.7 cell wall hydrolase compare
COO64_RS24290 nuoF -0.8 -2.2 NADH-quinone oxidoreductase subunit NuoF compare
COO64_RS06000 -0.8 -1.6 DEAD/DEAH box helicase compare
COO64_RS11055 rluD -0.8 -3.3 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
COO64_RS11800 -0.8 -3.7 cytochrome bc complex cytochrome b subunit compare
COO64_RS25455 -0.8 -2.1 response regulator transcription factor compare
COO64_RS03185 ychF -0.8 -2.4 redox-regulated ATPase YchF compare
COO64_RS10375 -0.8 -1.5 cold-shock protein compare
COO64_RS15150 pnp -0.8 -1.5 polyribonucleotide nucleotidyltransferase compare
COO64_RS04335 -0.8 -1.6 lipid asymmetry maintenance protein MlaB compare
COO64_RS05815 plsX -0.8 -5.5 phosphate acyltransferase PlsX compare
COO64_RS02205 -0.8 -1.1 tetratricopeptide repeat protein compare
COO64_RS17675 -0.8 -3.2 antimicrobial resistance protein Mig-14 compare
COO64_RS08265 -0.8 -2.6 SDR family oxidoreductase compare
COO64_RS07055 -0.8 -3.9 DHA2 family efflux MFS transporter permease subunit compare
COO64_RS19130 -0.8 -1.6 tRNA-Leu compare
COO64_RS09180 -0.8 -1.2 4-oxalocrotonate tautomerase family protein compare
COO64_RS12010 -0.8 -2.1 FxsA family protein compare
COO64_RS17700 -0.7 -5.0 toluene tolerance protein compare
COO64_RS01560 -0.7 -3.1 RidA family protein compare
COO64_RS24300 nuoH -0.7 -2.2 NADH-quinone oxidoreductase subunit NuoH compare
COO64_RS09785 -0.7 -2.0 hypothetical protein compare
COO64_RS13375 -0.7 -2.6 DUF924 family protein compare
COO64_RS25500 paaB -0.7 -2.2 1,2-phenylacetyl-CoA epoxidase subunit PaaB compare
COO64_RS04060 -0.7 -3.2 peptide chain release factor 3 compare
COO64_RS18430 -0.7 -1.1 hypothetical protein compare
COO64_RS09445 nagZ -0.7 -1.5 beta-N-acetylhexosaminidase compare
COO64_RS25435 -0.7 -1.3 MarR family winged helix-turn-helix transcriptional regulator compare
COO64_RS11515 -0.7 -1.9 SDR family NAD(P)-dependent oxidoreductase compare
COO64_RS18225 -0.7 -1.0 DUF2946 domain-containing protein compare
COO64_RS22810 -0.7 -2.4 lipopolysaccharide kinase InaA family protein compare
COO64_RS23495 -0.7 -2.2 response regulator transcription factor compare
COO64_RS07050 -0.7 -2.6 HlyD family secretion protein compare
COO64_RS19540 -0.7 -2.4 TetR/AcrR family transcriptional regulator compare
COO64_RS02475 polA -0.7 -5.1 DNA polymerase I compare
COO64_RS22700 -0.6 -0.9 hypothetical protein compare
COO64_RS24520 -0.6 -2.4 alpha/beta fold hydrolase compare
COO64_RS01075 ppx -0.6 -1.9 exopolyphosphatase compare
COO64_RS01270 xerC -0.6 -2.3 tyrosine recombinase XerC compare
COO64_RS03890 iscR -0.6 -1.7 Fe-S cluster assembly transcriptional regulator IscR compare
COO64_RS23705 -0.6 -1.8 MgtC/SapB family protein compare
COO64_RS24610 -0.6 -2.7 DUF4142 domain-containing protein compare
COO64_RS13725 -0.6 -1.1 DUF3156 family protein compare
COO64_RS11315 -0.6 -1.6 hypothetical protein compare
COO64_RS05360 -0.6 -1.1 CrfX protein compare
COO64_RS07165 -0.6 -1.7 hypothetical protein compare
COO64_RS02445 znuB -0.6 -3.2 zinc ABC transporter permease subunit ZnuB compare
COO64_RS11795 petA -0.6 -1.7 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
COO64_RS20095 ruvA -0.6 -1.9 Holliday junction branch migration protein RuvA compare
COO64_RS17430 mapR -0.6 -2.8 GntR family transcriptional regulator MpaR compare
COO64_RS07375 arsC -0.6 -1.1 arsenate reductase (glutaredoxin) compare
COO64_RS19200 clpX -0.6 -3.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
COO64_RS09895 -0.6 -2.6 GntR family transcriptional regulator compare
COO64_RS20350 -0.6 -1.4 hypothetical protein compare
COO64_RS07010 -0.6 -2.6 AraC family transcriptional regulator compare
COO64_RS17955 rnr -0.6 -4.4 ribonuclease R compare
COO64_RS22510 rsmA -0.6 -3.0 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
COO64_RS08345 -0.6 -1.4 CAP domain-containing protein compare
COO64_RS01415 -0.6 -1.6 DUF1127 domain-containing protein compare
COO64_RS07275 -0.6 -2.0 C40 family peptidase compare
COO64_RS04390 -0.6 -1.2 HU family DNA-binding protein compare
COO64_RS27275 -0.6 -1.9 hypothetical protein compare
COO64_RS07300 purN -0.6 -2.8 phosphoribosylglycinamide formyltransferase compare
COO64_RS03690 cyoD -0.6 -1.8 cytochrome o ubiquinol oxidase subunit IV compare
COO64_RS13330 glnL -0.6 -1.7 nitrogen regulation protein NR(II) compare
COO64_RS14650 -0.6 -1.9 ATP-binding protein compare
COO64_RS23425 -0.6 -2.5 type II secretion system F family protein compare
COO64_RS19935 recX -0.6 -0.9 recombination regulator RecX compare
COO64_RS04815 gspM -0.6 -1.0 type II secretion system protein GspM compare
COO64_RS14620 cobM -0.6 -1.5 precorrin-4 C(11)-methyltransferase compare
COO64_RS04600 -0.6 -1.3 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
COO64_RS15195 secG -0.6 -2.1 preprotein translocase subunit SecG compare
COO64_RS27380 -0.5 -1.9 hypothetical protein compare
COO64_RS05590 -0.5 -1.9 SDR family oxidoreductase compare
COO64_RS12445 -0.5 -1.9 CBS domain-containing protein compare
COO64_RS15005 -0.5 -3.9 acetolactate synthase 3 large subunit compare
COO64_RS01760 aspA -0.5 -2.9 aspartate ammonia-lyase compare
COO64_RS20055 -0.5 -1.4 SlyX family protein compare
COO64_RS11805 -0.5 -2.5 cytochrome c1 compare
COO64_RS00575 rfbA -0.5 -1.1 glucose-1-phosphate thymidylyltransferase RfbA compare
COO64_RS27355 -0.5 -1.3 Arc family DNA-binding protein compare
COO64_RS26070 -0.5 -1.8 fimbrial protein compare
COO64_RS11970 -0.5 -2.9 putative 2-dehydropantoate 2-reductase compare
COO64_RS22055 aac(6 -0.5 -1.5 aminoglycoside 6'-N-acetyltransferase compare
COO64_RS21330 -0.5 -3.5 ketoacyl-ACP synthase III compare
COO64_RS26185 -0.5 -2.4 sigma-54 dependent transcriptional regulator compare
COO64_RS06265 -0.5 -1.3 hypothetical protein compare
COO64_RS27265 -0.5 -1.4 anthrone oxygenase family protein compare
COO64_RS08805 -0.5 -1.1 LysR substrate-binding domain-containing protein compare
COO64_RS26725 -0.5 -1.5 hypothetical protein compare
COO64_RS14455 -0.5 -0.9 sigma-70 family RNA polymerase sigma factor compare
COO64_RS05345 -0.5 -2.8 OmpA family protein compare
COO64_RS15085 -0.5 -4.3 sensor histidine kinase compare
COO64_RS14920 -0.5 -1.0 YceK/YidQ family lipoprotein compare
COO64_RS17820 serB -0.5 -3.1 phosphoserine phosphatase SerB compare
COO64_RS15300 smpB -0.5 -2.0 SsrA-binding protein SmpB compare
COO64_RS16540 -0.5 -2.7 DegQ family serine endoprotease compare
COO64_RS23290 -0.5 -2.4 GyrI-like domain-containing protein compare
COO64_RS15095 -0.5 -1.6 polynucleotide adenylyltransferase PcnB compare
COO64_RS00250 -0.5 -1.0 oxidative damage protection protein compare
COO64_RS07885 -0.5 -1.2 AzlD domain-containing protein compare
COO64_RS14495 hpaR -0.5 -1.1 homoprotocatechuate degradation operon regulator HpaR compare
COO64_RS04340 -0.5 -1.4 BolA family protein compare
COO64_RS14255 moaA -0.5 -1.7 GTP 3',8-cyclase MoaA compare
COO64_RS24550 -0.5 -0.9 LysR family transcriptional regulator compare
COO64_RS15490 thiE -0.5 -2.1 thiamine phosphate synthase compare
COO64_RS13635 -0.5 -1.6 chemotaxis protein CheW compare
COO64_RS25560 -0.5 -2.2 LysR substrate-binding domain-containing protein compare
COO64_RS09385 -0.5 -1.6 hypothetical protein compare
COO64_RS20225 -0.5 -2.7 sulfurtransferase TusA family protein compare
COO64_RS01595 recG -0.5 -2.5 ATP-dependent DNA helicase RecG compare
COO64_RS14105 -0.5 -0.9 c-type cytochrome compare
COO64_RS06310 -0.5 -2.2 glycoside hydrolase family 19 protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas sp. SVBP6 in supernatant experiments

For supernatant Supernatant; Pseudomonas DC3000 grown in LB across organisms