Experiment set1S23 for Rhodanobacter sp. FW510-T8

Compare to:

no stress control

200 most important genes:

  gene name fitness t score description  
OKGIIK_00990 -3.6 -4.2 TonB-dependent copper receptor compare
OKGIIK_10175 rseP -3.5 -2.4 RIP metalloprotease RseP compare
OKGIIK_02315 purM -3.3 -3.9 phosphoribosylformylglycinamidine cyclo-ligase compare
OKGIIK_12705 pta -2.9 -3.9 NADP-dependent malic enzyme compare
OKGIIK_11115 fiu -2.8 -5.0 Outer membrane receptor for monomeric catechols compare
OKGIIK_15735 23S_rrna -2.8 -4.7 23S ribosomal RNA compare
OKGIIK_13855 -2.8 -1.9 Lipid A biosynthesis acyltransferase compare
OKGIIK_01155 cpsB -2.8 -7.5 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
OKGIIK_09550 rplS -2.7 -2.8 50S ribosomal protein L19 compare
OKGIIK_11105 baeS -2.7 -4.7 sensor histidine kinase compare
OKGIIK_13570 thrC -2.6 -3.1 threonine synthase compare
OKGIIK_12965 -2.6 -6.9 glutamate--cysteine ligase compare
OKGIIK_00090 -2.6 -1.8 serine-type D-Ala-D-Ala carboxypeptidase compare
OKGIIK_07300 -2.6 -3.5 carbamoyl phosphate synthase small subunit compare
OKGIIK_08110 pcm -2.6 -2.5 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
OKGIIK_03000 degQ -2.6 -10.6 peptidase S1 compare
OKGIIK_11505 purL -2.6 -3.9 phosphoribosylformylglycinamidine synthase compare
OKGIIK_11415 ldcA -2.5 -4.9 muramoyltetrapeptide carboxypeptidase compare
OKGIIK_16060 gpmA -2.4 -4.8 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
OKGIIK_01060 gap -2.4 -7.8 type I glyceraldehyde-3-phosphate dehydrogenase compare
OKGIIK_16565 mgtA -2.4 -7.2 magnesium-translocating P-type ATPase compare
OKGIIK_03310 minC -2.3 -3.0 septum site-determining protein MinC compare
OKGIIK_11110 ompR -2.3 -9.6 DNA-binding response regulator compare
OKGIIK_05210 -2.3 -3.7 HigA family addiction module antitoxin compare
OKGIIK_07870 rnc -2.3 -3.4 ribonuclease III compare
OKGIIK_05840 rimP -2.2 -2.1 ribosome maturation protein RimP compare
OKGIIK_16630 -2.2 -8.5 hypothetical protein compare
OKGIIK_01845 kup -2.2 -3.9 potassium uptake protein compare
OKGIIK_10805 abrB -2.2 -2.1 AbrB family transcriptional regulator compare
OKGIIK_06650 -2.2 -3.2 DUF2065 domain-containing protein compare
OKGIIK_09995 yajC -2.2 -4.7 preprotein translocase subunit YajC compare
OKGIIK_07250 lapB -2.1 -8.3 lipopolysaccharide assembly protein LapB compare
OKGIIK_02640 -2.1 -3.4 Chemotaxis protein compare
OKGIIK_07255 -2.1 -4.2 LapA-dom domain-containing protein compare
OKGIIK_06585 ompA -2.1 -9.5 flagellar motor protein MotB compare
OKGIIK_09975 -2.0 -10.2 Aminoglycoside phosphotransferase compare
OKGIIK_13750 purD -2.0 -3.3 phosphoribosylamine--glycine ligase compare
OKGIIK_01110 pgk -2.0 -6.2 phosphoglycerate kinase compare
OKGIIK_11075 gshB -2.0 -6.0 glutathione synthase compare
OKGIIK_06870 hflD -2.0 -6.4 high frequency lysogenization protein HflD compare
OKGIIK_01165 rfbC -2.0 -6.1 dTDP-4-dehydrorhamnose 3,5-epimerase compare
OKGIIK_16560 -1.9 -7.4 hypothetical protein compare
OKGIIK_06755 rnr -1.9 -13.7 ribonuclease R compare
OKGIIK_11330 lolD -1.8 -2.6 ABC transporter ATP-binding protein compare
OKGIIK_07900 rpoE -1.8 -7.9 RNA polymerase sigma factor RpoE compare
OKGIIK_01780 -1.8 -5.5 NAD+ synthase compare
OKGIIK_02260 raiA -1.8 -10.9 ribosomal subunit interface protein compare
OKGIIK_15695 -1.8 -7.7 MFS transporter compare
OKGIIK_15705 -1.8 -7.3 anhydro-N-acetylmuramic acid kinase compare
OKGIIK_14345 nagA -1.7 -8.4 N-acetylglucosamine-6-phosphate deacetylase compare
OKGIIK_07005 asnB -1.7 -8.3 asparagine synthase B compare
OKGIIK_01240 -1.7 -6.4 EamA domain-containing protein compare
OKGIIK_03305 minD -1.7 -1.9 septum site-determining protein MinD compare
OKGIIK_07295 carB -1.7 -5.6 carbamoyl-phosphate synthase large subunit compare
OKGIIK_11005 suhB -1.7 -4.6 Archaeal fructose-1,6-bisphosphatase or related enzyme, inositol monophosphatase family compare
OKGIIK_01790 rluD -1.7 -4.2 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
OKGIIK_01190 -1.6 -3.3 Transport permease protein compare
OKGIIK_00745 aceF -1.6 -2.3 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
OKGIIK_07245 -1.6 -6.2 Glycosyl transferase family 4 compare
OKGIIK_14180 -1.5 -5.2 DNA-binding response regulator compare
OKGIIK_09430 argH -1.5 -5.8 argininosuccinate lyase compare
OKGIIK_08010 -1.5 -8.3 Peptidylprolyl isomerase compare
OKGIIK_01215 -1.4 -7.8 GDP-mannose 4,6 dehydratase compare
OKGIIK_03430 -1.4 -5.0 N-acetylmuramoyl-L-alanine amidase compare
OKGIIK_01095 tkt -1.4 -6.5 transketolase compare
OKGIIK_14175 -1.4 -10.3 Sensor protein QseC compare
OKGIIK_09225 -1.4 -3.4 RecBCD enzyme subunit RecC compare
OKGIIK_16915 rfaB -1.4 -10.1 glycosyl transferase compare
OKGIIK_01195 -1.4 -4.2 ABC transporter, ATP-binding protein compare
OKGIIK_11965 mscL -1.4 -2.1 large-conductance mechanosensitive channel protein MscL compare
OKGIIK_05620 rfaF -1.4 -4.2 ADP-heptose--LPS heptosyltransferase compare
OKGIIK_03065 yqjQ -1.4 -5.1 Short-chain dehydrogenase compare
OKGIIK_13420 -1.3 -2.1 DUF45 domain-containing protein compare
OKGIIK_11445 ettA -1.3 -5.7 energy-dependent translational throttle protein EttA compare
OKGIIK_02920 tar -1.3 -3.1 Methyl-accepting chemotaxis protein (MCP) compare
OKGIIK_01080 fba1 -1.3 -8.8 fructose-bisphosphate aldolase class I compare
OKGIIK_05570 purF -1.3 -4.0 amidophosphoribosyltransferase compare
OKGIIK_13560 thrA -1.3 -5.4 homoserine dehydrogenase compare
OKGIIK_16805 purH -1.3 -1.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
OKGIIK_04850 trpA -1.3 -4.0 tryptophan synthase subunit alpha compare
OKGIIK_09515 gph -1.3 -4.4 phosphoglycolate phosphatase compare
OKGIIK_11440 glyA -1.3 -7.3 serine hydroxymethyltransferase compare
OKGIIK_15045 -1.3 -3.8 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
OKGIIK_15650 ftsN -1.3 -3.6 sporulation protein compare
OKGIIK_08915 -1.2 -1.5 hypothetical protein compare
OKGIIK_06740 gcvP2 -1.2 -6.7 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain compare
OKGIIK_09230 -1.2 -2.4 RecBCD enzyme subunit RecB compare
OKGIIK_04805 aroC -1.2 -4.2 chorismate synthase compare
OKGIIK_01170 rfbA -1.2 -7.0 glucose-1-phosphate thymidylyltransferase RfbA compare
OKGIIK_14155 -1.2 -4.3 Secretion protein HlyD compare
OKGIIK_02255 hprK -1.2 -7.3 HPr(Ser) kinase/phosphatase compare
OKGIIK_13745 -1.2 -9.2 Type III secretion system lipoprotein chaperone (YscW) compare
OKGIIK_11495 -1.2 -5.5 Glycosyl transferase family 2 compare
OKGIIK_07040 smc -1.2 -2.4 chromosome segregation protein SMC compare
OKGIIK_16330 folK -1.2 -1.9 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase compare
OKGIIK_01310 gcvH -1.2 -2.3 glycine cleavage system protein GcvH compare
OKGIIK_14165 lolE -1.2 -8.5 ABC transporter permease compare
OKGIIK_12590 lpdA -1.1 -2.8 dihydrolipoyl dehydrogenase compare
OKGIIK_11030 -1.1 -8.4 P63C domain-containing protein compare
OKGIIK_01160 rfbD -1.1 -4.2 dTDP-4-dehydrorhamnose reductase compare
OKGIIK_09325 -1.1 -2.0 Enoyl-CoA hydratase compare
OKGIIK_05950 roxA -1.1 -2.3 transcription factor compare
OKGIIK_05630 elaC -1.1 -3.1 Ribonuclease BN, tRNA processing enzyme compare
OKGIIK_06435 scpA -1.1 -3.7 Chromatin segregation and condensation protein Rec8/ScpA/Scc1, kleisin family compare
OKGIIK_04845 trpB -1.1 -6.1 tryptophan synthase subunit beta compare
OKGIIK_02250 rapZ -1.1 -6.1 RNase adapter RapZ compare
OKGIIK_14090 argD -1.1 -7.5 aspartate aminotransferase family protein compare
OKGIIK_14040 mnhC -1.0 -0.9 Na+/H+ antiporter subunit C compare
OKGIIK_06580 prpD -1.0 -4.0 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
OKGIIK_03560 abcC -1.0 -3.1 methionine ABC transporter ATP-binding protein compare
OKGIIK_14930 glnK -1.0 -2.1 transcriptional regulator compare
OKGIIK_14085 mtnX -1.0 -5.8 phosphatase compare
OKGIIK_14150 -1.0 -7.6 Alpha/beta hydrolase compare
OKGIIK_05875 -1.0 -4.9 Poly(3-hydroxyalkanoate) polymerase subunit PhaE compare
OKGIIK_01260 fixA -1.0 -1.3 EtfB protein compare
OKGIIK_08100 -1.0 -5.4 Peptidase M23 compare
OKGIIK_01185 -1.0 -7.5 Glycosyl transferase compare
OKGIIK_01175 rfbB -1.0 -5.8 dTDP-glucose 4,6-dehydratase compare
OKGIIK_06640 hflK -1.0 -4.5 FtsH protease activity modulator HflK compare
OKGIIK_01235 -1.0 -6.7 Glycosyl transferases group 1 compare
OKGIIK_03555 metP -1.0 -4.4 metal ABC transporter permease compare
OKGIIK_06990 -1.0 -1.1 Phosphoglycerate mutase compare
OKGIIK_12075 -0.9 -2.5 citrate synthase compare
OKGIIK_12700 aceE -0.9 -6.8 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
OKGIIK_06920 aroA -0.9 -1.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
OKGIIK_00795 ycgM -0.9 -4.2 2-keto-4-pentenoate hydratase compare
OKGIIK_14170 -0.9 -6.9 TolC family protein compare
OKGIIK_03550 nlpA -0.9 -4.5 methionine ABC transporter substrate-binding protein compare
OKGIIK_14795 -0.9 -2.9 Conjugal transfer protein TraR compare
OKGIIK_16440 -0.9 -2.9 Cytochrome C compare
OKGIIK_00110 ctpA -0.9 -3.4 C-terminal processing protease CtpA/Prc, contains a PDZ domain compare
OKGIIK_15165 -0.9 -1.6 hypothetical protein compare
OKGIIK_14160 -0.9 -3.5 ABC transporter ATP-binding protein compare
OKGIIK_03795 -0.9 -6.4 Putative beta-barrel assembly-enhancing protease compare
OKGIIK_13565 thrB -0.9 -2.6 homoserine kinase compare
OKGIIK_13530 -0.9 -3.0 2-epi-5-epi-valiolone synthase compare
OKGIIK_02360 pitA -0.9 -2.7 inorganic phosphate transporter compare
OKGIIK_01220 -0.8 -6.7 Phosphomannomutase compare
OKGIIK_16755 -0.8 -1.8 Thioesterase compare
OKGIIK_02520 -0.8 -1.4 hypothetical protein compare
OKGIIK_11725 mraZ -0.8 -2.5 division/cell wall cluster transcriptional repressor MraZ compare
OKGIIK_15520 pgi -0.8 -3.7 glucose-6-phosphate isomerase compare
OKGIIK_10270 -0.8 -1.8 DUF615 domain-containing protein compare
OKGIIK_06470 typA -0.8 -1.3 translational GTPase TypA compare
OKGIIK_16685 natB -0.8 -4.1 ABC transporter permease compare
OKGIIK_12625 -0.8 -1.2 DUF2383 domain-containing protein compare
OKGIIK_01210 gmd -0.8 -5.6 GDP-mannose 4,6-dehydratase compare
OKGIIK_16845 -0.8 -0.9 Protein-disulfide reductase compare
OKGIIK_10565 -0.8 -3.1 Ribosome-binding ATPase YchF compare
OKGIIK_11240 -0.8 -3.0 DUF4124 domain-containing protein compare
OKGIIK_05560 -0.8 -1.5 Sporulation protein compare
OKGIIK_07430 secG -0.8 -3.3 preprotein translocase subunit SecG compare
OKGIIK_04705 dcd -0.8 -5.1 dCTP deaminase compare
OKGIIK_12440 djlA -0.8 -2.5 co-chaperone DjlA compare
OKGIIK_07885 -0.8 -4.7 Elongation factor 4 compare
OKGIIK_12270 crp -0.7 -5.7 cAMP-activated global transcriptional regulator CRP compare
OKGIIK_14110 fabB -0.7 -3.4 3-oxoacyl-(acyl-carrier-protein) synthase compare
OKGIIK_00415 -0.7 -1.3 hypothetical protein compare
OKGIIK_06645 hflC -0.7 -3.7 protease modulator HflC compare
OKGIIK_06450 -0.7 -2.3 hypothetical protein compare
OKGIIK_00755 pdhA -0.7 -2.0 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
OKGIIK_01255 fixB -0.7 -4.3 electron transfer flavoprotein subunit alpha compare
OKGIIK_07680 -0.7 -1.4 ATPase P compare
OKGIIK_14445 -0.7 -2.3 DUF2945 domain-containing protein compare
OKGIIK_02115 ttdA -0.7 -2.9 fumarate hydratase compare
OKGIIK_13835 -0.7 -2.3 hypothetical protein compare
OKGIIK_02070 -0.7 -2.2 hypothetical protein compare
OKGIIK_00345 -0.7 -2.2 GCN5 family acetyltransferase compare
OKGIIK_04915 -0.7 -2.1 Ferric uptake regulation protein compare
OKGIIK_11055 -0.7 -4.4 chemotaxis protein compare
OKGIIK_08890 -0.7 -2.3 DUF1351 domain-containing protein compare
OKGIIK_06305 -0.7 -3.0 Cation transporter compare
OKGIIK_10830 pulO -0.7 -3.2 prepilin peptidase compare
OKGIIK_07375 smpB -0.7 -0.7 SsrA-binding protein SmpB compare
OKGIIK_12595 aceF -0.7 -2.6 dihydrolipoyllysine-residue acetyltransferase compare
OKGIIK_11065 ompR -0.7 -1.4 two-component system response regulator compare
OKGIIK_11740 -0.7 -4.4 LppC putative lipoprotein compare
OKGIIK_15195 -0.7 -3.1 LuxR family transcriptional regulator compare
OKGIIK_12135 mlaF -0.7 -3.4 ABC transporter ATP-binding protein compare
OKGIIK_14035 phaD -0.7 -3.7 monovalent cation/H+ antiporter subunit D compare
OKGIIK_09875 glpG -0.7 -5.2 DUF1751 domain-containing protein compare
OKGIIK_07970 ppsA -0.7 -5.1 phosphoenolpyruvate synthase compare
OKGIIK_03865 -0.7 -1.5 ferredoxin compare
OKGIIK_06860 rnt -0.7 -2.5 ribonuclease T compare
OKGIIK_00095 ybeD -0.7 -1.6 DUF493 domain-containing protein compare
OKGIIK_11370 -0.7 -1.4 Hemin transporter compare
OKGIIK_09135 caiA -0.6 -4.1 acyl-CoA dehydrogenase compare
OKGIIK_12130 mlaE -0.6 -2.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
OKGIIK_11600 -0.6 -1.7 ATP:cob(I)alamin adenosyltransferase compare
OKGIIK_14700 -0.6 -1.6 Hexosyltransferase compare
OKGIIK_12065 -0.6 -5.2 Penicillin-binding protein 1A compare
OKGIIK_08045 tig -0.6 -2.4 trigger factor compare
OKGIIK_12225 -0.6 -3.3 5-formyltetrahydrofolate cyclo-ligase compare
OKGIIK_03895 panD -0.6 -1.9 aspartate 1-decarboxylase compare
OKGIIK_03040 -0.6 -1.4 hypothetical protein compare
OKGIIK_01390 -0.6 -3.8 Transcriptional regulator compare
OKGIIK_04520 -0.6 -1.7 GCN5 family acetyltransferase compare
OKGIIK_03265 -0.6 -1.8 hypothetical protein compare
OKGIIK_08280 -0.6 -3.0 DUF4440 domain-containing protein compare
OKGIIK_15125 fbp -0.6 -4.7 class 1 fructose-bisphosphatase compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp. FW510-T8 in no stress control experiments