Experiment set1S184 for Synechocystis sp000284455 PCC 6803

Compare to:

growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

200 most detrimental genes:

  gene name fitness t score description  
SGL_RS17625 +1.4 10.6 EAL domain-containing protein compare
SGL_RS01375 +1.2 2.8 hypothetical protein compare
SGL_RS14150 +1.0 1.9 antitoxin compare
SGL_RS03745 +0.9 7.4 glycosyltransferase family 4 protein compare
SGL_RS06795 +0.9 1.9 glutaredoxin 3 compare
SGL_RS03665 +0.8 6.1 GDP-mannose 4,6-dehydratase compare
SGL_RS03740 +0.8 5.8 hypothetical protein compare
SGL_RS19420 +0.7 2.4 hypothetical protein compare
SGL_RS18725 +0.7 1.6 IS5-like element IS5Sa2 family transposase compare
SGL_RS03690 +0.7 5.7 glycosyltransferase compare
SGL_RS18620 +0.7 2.7 HNH endonuclease compare
SGL_RS03570 +0.7 1.5 Uma2 family endonuclease compare
SGL_RS09880 +0.7 3.1 hypothetical protein compare
SGL_RS14640 +0.7 1.3 hypothetical protein compare
SGL_RS04725 +0.7 3.6 response regulator transcription factor compare
SGL_RS05380 +0.7 1.7 monovalent cation/H(+) antiporter subunit G compare
SGL_RS05035 +0.6 1.2 hypothetical protein compare
SGL_RS20145 +0.6 1.2 hypothetical protein compare
SGL_RS10955 +0.6 1.3 hypothetical protein compare
SGL_RS12515 +0.6 1.2 hypothetical protein compare
SGL_RS01860 +0.6 3.8 CAP domain-containing protein compare
SGL_RS01925 +0.6 2.1 Uma2 family endonuclease compare
SGL_RS01035 +0.6 2.3 type III-B CRISPR module RAMP protein Cmr4 compare
SGL_RS13215 +0.6 2.5 SxtJ family membrane protein compare
SGL_RS03525 +0.6 2.4 hypothetical protein compare
SGL_RS09510 +0.6 1.2 beta-3-deoxy-D-manno-oct-2-ulosonic acid transferase compare
SGL_RS00410 +0.6 2.0 SDR family oxidoreductase compare
SGL_RS10315 +0.6 4.8 hypothetical protein compare
SGL_RS18765 +0.6 1.6 chlorophyll A-B-binding protein compare
SGL_RS10385 +0.6 1.4 heme oxygenase (biliverdin-producing) compare
SGL_RS03685 +0.6 4.0 glycosyltransferase compare
SGL_RS04880 +0.5 1.1 cupin domain-containing protein compare
SGL_RS01825 +0.5 1.2 type II toxin-antitoxin system HigB family toxin compare
SGL_RS13795 +0.5 0.8 phosphohistidine phosphatase SixA compare
SGL_RS18535 +0.5 2.7 hypothetical protein compare
SGL_RS09605 +0.5 3.5 efflux RND transporter permease subunit compare
SGL_RS08330 +0.5 2.3 cupin domain-containing protein compare
SGL_RS16480 +0.5 2.6 methyl-accepting chemotaxis protein compare
SGL_RS19875 +0.5 1.2 IS1 family transposase compare
SGL_RS12390 +0.5 1.1 aromatic ring-hydroxylating dioxygenase subunit alpha compare
SGL_RS12375 +0.5 1.1 hypothetical protein compare
SGL_RS00540 +0.5 1.5 hypothetical protein compare
SGL_RS04395 +0.5 2.2 DUF5615 family PIN-like protein compare
SGL_RS12590 +0.5 1.8 low molecular weight protein-tyrosine-phosphatase compare
SGL_RS18705 +0.5 1.1 IS1 family transposase compare
SGL_RS05200 +0.5 3.2 DNA ligase compare
SGL_RS02195 +0.5 1.3 nucleoside monophosphate kinase compare
SGL_RS07855 +0.5 3.9 MASE1 domain-containing protein compare
SGL_RS00470 +0.5 2.0 DUF6088 family protein compare
SGL_RS02395 +0.5 0.9 hypothetical protein compare
SGL_RS16070 +0.4 2.1 glycoside hydrolase family protein compare
SGL_RS16790 +0.4 2.6 hypothetical protein compare
SGL_RS19765 +0.4 1.3 BrnT family toxin compare
SGL_RS12640 +0.4 1.3 hypothetical protein compare
SGL_RS00815 +0.4 1.5 type II toxin-antitoxin system PemK/MazF family toxin compare
SGL_RS18085 +0.4 3.0 molecular chaperone HtpG compare
SGL_RS04825 +0.4 0.9 hypothetical protein compare
SGL_RS14690 +0.4 2.7 HAMP domain-containing sensor histidine kinase compare
SGL_RS01470 +0.4 0.7 hypothetical protein compare
SGL_RS19440 +0.4 0.8 hypothetical protein compare
SGL_RS13930 +0.4 1.3 hypothetical protein compare
SGL_RS04300 +0.4 2.3 PAS domain S-box protein compare
SGL_RS09530 +0.4 2.0 glycosyltransferase compare
SGL_RS03655 +0.4 2.2 glycosyltransferase family 2 protein compare
SGL_RS19620 +0.4 1.1 hypothetical protein compare
SGL_RS10455 +0.4 1.7 hypothetical protein compare
SGL_RS05635 +0.4 1.4 DUF4269 domain-containing protein compare
SGL_RS11920 +0.4 1.4 KH domain-containing protein compare
SGL_RS19365 +0.4 1.5 hypothetical protein compare
SGL_RS11360 +0.4 1.8 arsenical resistance protein ArsH compare
SGL_RS02290 +0.4 2.7 8-oxo-dGTP diphosphatase MutT compare
SGL_RS01160 +0.4 0.9 DUF5615 family PIN-like protein compare
SGL_RS11750 +0.4 0.6 hypothetical protein compare
SGL_RS10420 +0.4 0.6 methionine ABC transporter ATP-binding protein compare
SGL_RS10145 +0.4 1.7 cytochrome c compare
SGL_RS03505 +0.4 2.8 exopolysaccharide transport family protein compare
SGL_RS07340 +0.4 1.6 TRAP transporter substrate-binding protein compare
SGL_RS13365 +0.4 1.0 flavin reductase family protein compare
SGL_RS07395 +0.4 1.1 cupin domain-containing protein compare
SGL_RS14400 +0.4 3.2 cation:proton antiporter compare
SGL_RS13020 +0.4 0.9 DUF433 domain-containing protein compare
SGL_RS04345 +0.4 3.4 response regulator compare
SGL_RS06550 +0.4 2.2 glycosyltransferase family 2 protein compare
SGL_RS00180 +0.4 1.3 IS5 family transposase compare
SGL_RS09635 +0.4 3.1 TldD/PmbA family protein compare
SGL_RS02165 +0.4 1.9 hypothetical protein compare
SGL_RS00535 +0.4 1.0 hypothetical protein compare
SGL_RS00605 +0.4 1.1 hypothetical protein compare
SGL_RS02110 +0.4 1.9 TetR/AcrR family transcriptional regulator compare
SGL_RS09240 +0.4 1.0 restriction endonuclease compare
SGL_RS09840 +0.4 1.9 hypothetical protein compare
SGL_RS14585 +0.4 0.5 TolB family protein compare
SGL_RS00250 +0.4 1.6 WecB/TagA/CpsF family glycosyltransferase compare
SGL_RS03040 +0.4 1.4 MASE1 domain-containing protein compare
SGL_RS00995 +0.4 1.6 TIGR03985 family CRISPR-associated protein compare
SGL_RS18380 +0.3 2.1 GTP-binding protein compare
SGL_RS17640 +0.3 1.8 family 10 glycosylhydrolase compare
SGL_RS06635 +0.3 0.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
SGL_RS04930 +0.3 1.1 hypothetical protein compare
SGL_RS19630 +0.3 0.9 DUF4114 domain-containing protein compare
SGL_RS09540 +0.3 3.1 glycosyltransferase compare
SGL_RS06965 +0.3 1.6 hypothetical protein compare
SGL_RS13585 +0.3 2.2 PAS domain S-box protein compare
SGL_RS15605 +0.3 0.7 hypothetical protein compare
SGL_RS11550 +0.3 0.8 hypothetical protein compare
SGL_RS03990 +0.3 1.8 hypothetical protein compare
SGL_RS01355 +0.3 1.6 SprT family zinc-dependent metalloprotease compare
SGL_RS02910 +0.3 2.2 linear amide C-N hydrolase compare
SGL_RS05180 +0.3 1.3 alpha/beta hydrolase compare
SGL_RS02185 +0.3 0.9 PepSY domain-containing protein compare
SGL_RS17510 +0.3 1.3 hypothetical protein compare
SGL_RS00315 +0.3 0.5 hypothetical protein compare
SGL_RS18770 +0.3 0.6 photosystem II reaction center protein PsbN compare
SGL_RS15575 +0.3 2.5 creatininase family protein compare
SGL_RS10990 +0.3 1.1 hypothetical protein compare
SGL_RS03160 +0.3 2.2 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofH compare
SGL_RS04025 +0.3 1.7 proton extrusion protein PcxA compare
SGL_RS15420 +0.3 1.1 DevA family ABC transporter ATP-binding protein compare
SGL_RS10205 +0.3 1.8 hypothetical protein compare
SGL_RS08225 +0.3 1.3 YkvA family protein compare
SGL_RS01320 +0.3 0.9 HNH endonuclease compare
SGL_RS00090 +0.3 1.0 aminotransferase class V-fold PLP-dependent enzyme compare
SGL_RS08075 +0.3 1.7 peroxiredoxin compare
SGL_RS14455 +0.3 1.2 hypothetical protein compare
SGL_RS15290 +0.3 1.2 6-carboxytetrahydropterin synthase QueD compare
SGL_RS07420 +0.3 1.9 DJ-1/PfpI family protein compare
SGL_RS05090 +0.3 1.9 response regulator compare
SGL_RS12760 +0.3 1.2 hypothetical protein compare
SGL_RS07525 +0.3 1.4 CDGSH iron-sulfur domain-containing protein compare
SGL_RS19910 +0.3 1.1 DUF29 domain-containing protein compare
SGL_RS07210 +0.3 1.4 hypothetical protein compare
SGL_RS06820 +0.3 0.6 hypothetical protein compare
SGL_RS13230 +0.3 2.1 FAD-dependent oxidoreductase compare
SGL_RS17205 +0.3 1.1 radical SAM protein compare
SGL_RS11590 +0.3 1.4 hypothetical protein compare
SGL_RS03635 +0.3 1.3 glycosyltransferase family 4 protein compare
SGL_RS17590 +0.3 0.9 PAS domain S-box protein compare
SGL_RS08820 +0.3 1.8 metal ABC transporter substrate-binding protein compare
SGL_RS10880 +0.3 1.6 hydrogenase nickel incorporation protein HypB compare
SGL_RS05020 +0.3 1.8 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
SGL_RS11525 +0.3 0.9 DUF2237 family protein compare
SGL_RS02010 +0.3 2.1 hypothetical protein compare
SGL_RS13990 +0.3 1.8 nucleoside deaminase compare
SGL_RS01815 +0.3 1.7 restriction endonuclease subunit S compare
SGL_RS04635 +0.3 1.3 hypothetical protein compare
SGL_RS14085 +0.3 1.3 PAS domain-containing protein compare
SGL_RS16865 +0.3 1.0 sulfurtransferase TusA family protein compare
SGL_RS19300 +0.3 0.9 hypothetical protein compare
SGL_RS13655 +0.3 1.3 DNA-3-methyladenine glycosylase compare
SGL_RS02935 +0.3 1.2 proton extrusion protein PcxA compare
SGL_RS12965 +0.3 2.0 SDR family NAD(P)-dependent oxidoreductase compare
SGL_RS18710 +0.3 0.5 DUF3155 domain-containing protein compare
SGL_RS09365 +0.3 0.6 DUF3288 family protein compare
SGL_RS03145 +0.3 1.9 MASE1 domain-containing protein compare
SGL_RS14005 +0.3 1.0 abortive infection system antitoxin AbiGi family protein compare
SGL_RS06415 +0.3 2.0 GNAT family N-acetyltransferase compare
SGL_RS16235 +0.3 1.0 hypothetical protein compare
SGL_RS09685 +0.3 1.8 Uma2 family endonuclease compare
SGL_RS16185 +0.3 1.0 D-alanyl-D-alanine carboxypeptidase family protein compare
SGL_RS16280 +0.3 1.4 L,D-transpeptidase compare
SGL_RS18155 +0.3 1.8 cytochrome b6-f complex iron-sulfur subunit compare
SGL_RS02040 +0.3 1.6 DUF1636 family protein compare
SGL_RS12595 +0.3 1.5 ROK family protein compare
SGL_RS04610 +0.3 1.4 Uma2 family endonuclease compare
SGL_RS05415 +0.3 0.8 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
SGL_RS10645 +0.3 1.8 carbamoyltransferase compare
SGL_RS18340 +0.3 0.9 hypothetical protein compare
SGL_RS12150 +0.3 2.0 hypothetical protein compare
SGL_RS12990 +0.3 1.1 hypothetical protein compare
SGL_RS18485 +0.3 1.3 HNH endonuclease compare
SGL_RS12315 +0.3 0.8 hypothetical protein compare
SGL_RS02000 +0.3 1.6 MotA/TolQ/ExbB proton channel family protein compare
SGL_RS17980 +0.3 1.9 hypothetical protein compare
SGL_RS01095 +0.3 1.0 hypothetical protein compare
SGL_RS16650 +0.3 1.1 carbohydrate ABC transporter permease compare
SGL_RS13435 +0.3 1.4 MgtC/SapB family protein compare
SGL_RS11215 +0.3 1.5 HEAT repeat domain-containing protein compare
SGL_RS00305 +0.3 1.4 ATP-binding protein compare
SGL_RS02920 +0.3 0.9 DUF2092 domain-containing protein compare
SGL_RS00350 +0.3 0.8 Rpn family recombination-promoting nuclease/putative transposase compare
SGL_RS11345 +0.2 1.6 fructose bisphosphate aldolase compare
SGL_RS01240 +0.2 1.1 cupin domain-containing protein compare
SGL_RS12040 +0.2 1.8 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase compare
SGL_RS15725 +0.2 0.6 ParA family protein compare
SGL_RS00345 +0.2 0.6 dihydrofolate reductase family protein compare
SGL_RS18260 +0.2 1.8 cyclic 2,3-diphosphoglycerate synthase compare
SGL_RS06720 +0.2 0.7 SH3 domain-containing protein compare
SGL_RS11230 +0.2 1.6 type 2 isopentenyl-diphosphate Delta-isomerase compare
SGL_RS01630 +0.2 1.2 ImmA/IrrE family metallo-endopeptidase compare
SGL_RS04925 +0.2 0.5 hypothetical protein compare
SGL_RS15585 +0.2 1.2 Crp/Fnr family transcriptional regulator compare
SGL_RS11930 +0.2 0.4 DUF29 domain-containing protein compare
SGL_RS04585 +0.2 1.6 response regulator compare
SGL_RS15450 +0.2 1.3 hypothetical protein compare
SGL_RS05610 +0.2 0.9 hypothetical protein compare
SGL_RS09235 +0.2 1.4 adenine phosphoribosyltransferase compare
SGL_RS01215 +0.2 1.5 hypothetical protein compare
SGL_RS12435 +0.2 0.6 PCP reductase family protein compare
SGL_RS08910 +0.2 0.6 hypothetical protein compare
SGL_RS05870 +0.2 0.5 DUF1823 family protein compare


Specific Phenotypes

None in this experiment

For Synechocystis sp000284455 PCC 6803 in carbon dioxide experiments