Experiment set1S134 for Synechocystis sp000284455 PCC 6803

Compare to:

growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

200 most detrimental genes:

  gene name fitness t score description  
SGL_RS18710 +1.0 1.7 DUF3155 domain-containing protein compare
SGL_RS19875 +0.9 1.0 IS1 family transposase compare
SGL_RS12600 +0.9 2.1 DUF2062 domain-containing protein compare
SGL_RS14640 +0.8 1.4 hypothetical protein compare
SGL_RS05220 +0.7 2.1 DUF1995 family protein compare
SGL_RS18985 +0.7 1.6 transposase compare
SGL_RS05035 +0.6 1.2 hypothetical protein compare
SGL_RS08555 +0.6 1.3 DUF2442 domain-containing protein compare
SGL_RS00560 +0.6 1.3 Rpn family recombination-promoting nuclease/putative transposase compare
SGL_RS13690 +0.6 1.8 pentapeptide repeat-containing protein compare
SGL_RS03495 +0.6 2.3 metal-binding protein compare
SGL_RS19635 +0.6 1.5 hypothetical protein compare
SGL_RS11920 +0.6 2.1 KH domain-containing protein compare
SGL_RS09730 +0.6 1.3 type II toxin-antitoxin system VapC family toxin compare
SGL_RS07270 +0.5 1.2 hypothetical protein compare
SGL_RS04810 +0.5 1.2 AarF/ABC1/UbiB kinase family protein compare
SGL_RS01855 +0.5 2.0 AIPR family protein compare
SGL_RS01190 +0.5 1.5 DUF2281 domain-containing protein compare
SGL_RS07165 +0.5 1.3 M23 family metallopeptidase compare
SGL_RS01035 +0.5 2.8 type III-B CRISPR module RAMP protein Cmr4 compare
SGL_RS08085 +0.5 1.4 DUF1499 domain-containing protein compare
SGL_RS02350 +0.5 2.1 type II toxin-antitoxin system YhaV family toxin compare
SGL_RS10360 +0.5 1.2 hypothetical protein compare
SGL_RS05490 +0.4 1.5 hypothetical protein compare
SGL_RS10035 +0.4 1.5 VWA domain-containing protein compare
SGL_RS18640 +0.4 1.6 transposase compare
SGL_RS06635 +0.4 1.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
SGL_RS19755 +0.4 2.1 hypothetical protein compare
SGL_RS06500 +0.4 1.7 glycosyltransferase family 4 protein compare
SGL_RS05205 +0.4 1.8 DEAD/DEAH box helicase compare
SGL_RS11075 +0.4 2.3 ABC-2 family transporter protein compare
SGL_RS17935 +0.4 0.7 hypothetical protein compare
SGL_RS15195 +0.4 1.4 hypothetical protein compare
SGL_RS09440 +0.4 1.8 hypothetical protein compare
SGL_RS18025 +0.4 1.1 hypothetical protein compare
SGL_RS05890 +0.4 1.8 urease accessory protein UreF compare
SGL_RS20190 +0.4 1.6 hypothetical protein compare
SGL_RS07785 +0.4 1.1 hypothetical protein compare
SGL_RS17690 +0.4 1.4 hypothetical protein compare
SGL_RS08350 +0.4 1.3 peroxiredoxin-like family protein compare
SGL_RS17715 +0.4 0.9 DUF4327 family protein compare
SGL_RS08255 +0.4 2.3 ABC-F family ATP-binding cassette domain-containing protein compare
SGL_RS17860 +0.4 1.1 Holliday junction resolvase RuvX compare
SGL_RS00595 +0.4 0.8 hypothetical protein compare
SGL_RS13150 +0.4 1.1 DUF751 family protein compare
SGL_RS14130 +0.4 1.9 hypothetical protein compare
SGL_RS00855 +0.4 1.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
SGL_RS03100 +0.4 1.3 DUF2288 domain-containing protein compare
SGL_RS07225 +0.4 1.0 Uma2 family endonuclease compare
SGL_RS17115 +0.4 2.2 DUF3370 domain-containing protein compare
SGL_RS09990 +0.4 1.1 NAD(P)H-quinone oxidoreductase subunit N compare
SGL_RS05870 +0.4 1.5 DUF1823 family protein compare
SGL_RS08875 +0.4 1.3 potassium-transporting ATPase subunit F compare
SGL_RS11995 +0.4 1.6 hypothetical protein compare
SGL_RS10685 +0.4 1.9 type IV pilus assembly protein PilM compare
SGL_RS16140 +0.4 1.6 GNAT family N-acetyltransferase compare
SGL_RS14895 +0.4 1.8 DUF2811 domain-containing protein compare
SGL_RS03665 +0.4 2.3 GDP-mannose 4,6-dehydratase compare
SGL_RS15060 +0.4 2.5 PstS family phosphate ABC transporter substrate-binding protein compare
SGL_RS14005 +0.4 1.7 abortive infection system antitoxin AbiGi family protein compare
SGL_RS08575 +0.4 1.4 hypothetical protein compare
SGL_RS14555 +0.4 1.6 YraN family protein compare
SGL_RS02500 +0.4 2.0 transposase compare
SGL_RS06820 +0.4 0.7 hypothetical protein compare
SGL_RS14590 +0.4 1.7 hypothetical protein compare
SGL_RS17070 +0.4 1.0 DUF3146 family protein compare
SGL_RS07095 +0.4 1.9 phasin PhaP compare
SGL_RS01195 +0.3 1.4 PIN domain-containing protein compare
SGL_RS17325 +0.3 1.0 putative toxin-antitoxin system toxin component, PIN family compare
SGL_RS00450 +0.3 0.9 recombinase family protein compare
SGL_RS20115 +0.3 1.2 hypothetical protein compare
SGL_RS19395 +0.3 1.3 hypothetical protein compare
SGL_RS19375 +0.3 1.6 hypothetical protein compare
SGL_RS01160 +0.3 0.9 DUF5615 family PIN-like protein compare
SGL_RS00355 +0.3 2.3 ion channel compare
SGL_RS09880 +0.3 1.3 hypothetical protein compare
SGL_RS19695 +0.3 1.8 GNAT family N-acetyltransferase compare
SGL_RS17755 +0.3 1.5 circadian clock protein KaiB compare
SGL_RS06300 +0.3 1.7 hypothetical protein compare
SGL_RS18370 +0.3 0.9 cyclic nucleotide-binding domain-containing protein compare
SGL_RS00390 +0.3 1.8 thermonuclease family protein compare
SGL_RS05060 +0.3 0.6 hypothetical protein compare
SGL_RS04315 +0.3 1.1 ABC transporter ATP-binding protein compare
SGL_RS00315 +0.3 0.6 hypothetical protein compare
SGL_RS13365 +0.3 1.5 flavin reductase family protein compare
SGL_RS19255 +0.3 1.1 transposase compare
SGL_RS04745 +0.3 1.3 STAS domain-containing protein compare
SGL_RS19730 +0.3 1.5 DNA cytosine methyltransferase compare
SGL_RS12310 +0.3 1.2 alpha/beta hydrolase compare
SGL_RS19610 +0.3 1.2 hypothetical protein compare
SGL_RS05485 +0.3 1.4 putative toxin-antitoxin system toxin component, PIN family compare
SGL_RS10375 +0.3 0.8 EI24 domain-containing protein compare
SGL_RS01990 +0.3 2.6 TonB-dependent siderophore receptor compare
SGL_RS07985 +0.3 0.9 glycosyltransferase family 39 protein compare
SGL_RS05215 +0.3 0.7 TIGR02450 family Trp-rich protein compare
SGL_RS11750 +0.3 0.7 hypothetical protein compare
SGL_RS14660 +0.3 0.9 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
SGL_RS17205 +0.3 0.8 radical SAM protein compare
SGL_RS06330 +0.3 2.2 glycosyltransferase family 4 protein compare
SGL_RS05415 +0.3 0.9 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
SGL_RS01135 +0.3 1.2 DUF4433 domain-containing protein compare
SGL_RS02140 +0.3 1.6 class I SAM-dependent methyltransferase compare
SGL_RS03220 +0.3 1.6 Rpn family recombination-promoting nuclease/putative transposase compare
SGL_RS19765 +0.3 1.8 BrnT family toxin compare
SGL_RS19370 +0.3 1.0 hypothetical protein compare
SGL_RS09565 +0.3 0.7 DUF115 domain-containing protein compare
SGL_RS09855 +0.3 0.8 slipin family protein compare
SGL_RS10710 +0.3 1.6 FkbM family methyltransferase compare
SGL_RS03025 +0.3 1.5 hypothetical protein compare
SGL_RS00725 +0.3 0.7 hypothetical protein compare
SGL_RS11550 +0.3 0.7 hypothetical protein compare
SGL_RS02565 +0.3 1.3 GH3 auxin-responsive promoter family protein compare
SGL_RS04380 +0.3 1.0 TerD family protein compare
SGL_RS01240 +0.3 0.8 cupin domain-containing protein compare
SGL_RS04355 +0.3 1.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
SGL_RS04350 +0.3 2.1 PleD family two-component system response regulator compare
SGL_RS10755 +0.3 1.4 Crp/Fnr family transcriptional regulator compare
SGL_RS03015 +0.3 1.4 VOC family protein compare
SGL_RS09520 +0.3 1.8 DUF115 domain-containing protein compare
SGL_RS15920 +0.3 1.7 GNAT family N-acetyltransferase compare
SGL_RS08090 +0.3 1.6 photosystem II reaction center protein Psb28 compare
SGL_RS05900 +0.3 1.4 ATP-binding cassette domain-containing protein compare
SGL_RS17750 +0.3 1.7 circadian clock protein KaiA compare
SGL_RS03195 +0.3 1.3 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
SGL_RS03010 +0.3 1.7 4-alpha-glucanotransferase compare
SGL_RS04265 +0.3 1.7 calcium-binding protein compare
SGL_RS16570 +0.3 1.8 nitrate ABC transporter permease compare
SGL_RS09020 +0.3 1.6 zinc ribbon domain-containing protein compare
SGL_RS06470 +0.3 1.3 chlorophyll a/b-binding protein compare
SGL_RS19580 +0.3 1.2 hypothetical protein compare
SGL_RS02930 +0.3 1.7 SulP family inorganic anion transporter compare
SGL_RS04300 +0.3 1.3 PAS domain S-box protein compare
SGL_RS14100 +0.3 1.3 gamma-glutamylcyclotransferase compare
SGL_RS04860 +0.3 1.5 Uma2 family endonuclease compare
SGL_RS04960 +0.3 0.9 VOC family protein compare
SGL_RS06245 +0.3 0.9 late competence development ComFB family protein compare
SGL_RS00605 +0.3 0.8 hypothetical protein compare
SGL_RS03080 +0.3 1.9 transaldolase compare
SGL_RS08055 +0.3 1.8 two-component system response regulator compare
SGL_RS17235 +0.3 1.3 hypothetical protein compare
SGL_RS08285 +0.3 1.4 hypothetical protein compare
SGL_RS18490 +0.3 0.8 hypothetical protein compare
SGL_RS16280 +0.3 1.1 L,D-transpeptidase compare
SGL_RS02770 +0.3 2.1 alpha-E domain-containing protein compare
SGL_RS02355 +0.3 0.7 hypothetical protein compare
SGL_RS13675 +0.3 0.5 2OG-Fe(II) oxygenase compare
SGL_RS13340 +0.3 1.7 GNAT family N-acetyltransferase compare
SGL_RS06475 +0.3 1.1 hypothetical protein compare
SGL_RS18185 +0.3 1.3 DUF1269 domain-containing protein compare
SGL_RS01860 +0.3 1.4 CAP domain-containing protein compare
SGL_RS02085 +0.3 1.0 hypothetical protein compare
SGL_RS19505 +0.2 1.0 hypothetical protein compare
SGL_RS05985 +0.2 1.7 DNA-processing protein DprA compare
SGL_RS10490 +0.2 1.2 precorrin-8X methylmutase compare
SGL_RS10880 +0.2 1.3 hydrogenase nickel incorporation protein HypB compare
SGL_RS13750 +0.2 0.9 hypothetical protein compare
SGL_RS18485 +0.2 1.2 HNH endonuclease compare
SGL_RS05070 +0.2 0.9 2Fe-2S iron-sulfur cluster-binding protein compare
SGL_RS15055 +0.2 1.1 hypothetical protein compare
SGL_RS19480 +0.2 0.6 hypothetical protein compare
SGL_RS00880 +0.2 1.3 Rho termination factor N-terminal domain-containing protein compare
SGL_RS05055 +0.2 1.4 GAF domain-containing protein compare
SGL_RS03990 +0.2 1.6 hypothetical protein compare
SGL_RS00495 +0.2 0.9 hypothetical protein compare
SGL_RS19440 +0.2 0.6 hypothetical protein compare
SGL_RS10280 +0.2 1.7 hypothetical protein compare
SGL_RS10695 +0.2 1.7 pilus assembly protein compare
SGL_RS00375 +0.2 1.0 Rpn family recombination-promoting nuclease/putative transposase compare
SGL_RS17940 +0.2 1.0 hypothetical protein compare
SGL_RS02075 +0.2 1.7 ATP-dependent DNA helicase compare
SGL_RS06965 +0.2 1.1 hypothetical protein compare
SGL_RS10605 +0.2 1.4 Crp/Fnr family transcriptional regulator compare
SGL_RS01960 +0.2 1.1 MFS transporter compare
SGL_RS04105 +0.2 1.4 alpha/beta hydrolase compare
SGL_RS18475 +0.2 0.6 metalloregulator ArsR/SmtB family transcription factor compare
SGL_RS14525 +0.2 0.7 reverse transcriptase domain-containing protein compare
SGL_RS19630 +0.2 0.9 DUF4114 domain-containing protein compare
SGL_RS17280 +0.2 1.4 GNAT family N-acetyltransferase compare
SGL_RS00175 +0.2 0.5 hypothetical protein compare
SGL_RS09685 +0.2 1.4 Uma2 family endonuclease compare
SGL_RS03820 +0.2 1.8 universal stress protein compare
SGL_RS09240 +0.2 0.7 restriction endonuclease compare
SGL_RS01595 +0.2 1.2 type II toxin-antitoxin system VapC family toxin compare
SGL_RS10615 +0.2 1.4 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase compare
SGL_RS01555 +0.2 1.4 two-component system sensor histidine kinase RppB compare
SGL_RS03885 +0.2 1.2 response regulator transcription factor compare
SGL_RS14750 +0.2 1.9 TldD/PmbA family protein compare
SGL_RS08015 +0.2 0.5 DUF29 family protein compare
SGL_RS09380 +0.2 0.6 hypothetical protein compare
SGL_RS09620 +0.2 0.6 hypothetical protein compare
SGL_RS08540 +0.2 1.8 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
SGL_RS07920 +0.2 0.5 DUF29 domain-containing protein compare
SGL_RS15605 +0.2 0.6 hypothetical protein compare
SGL_RS01150 +0.2 0.5 nucleotidyltransferase family protein compare
SGL_RS14360 +0.2 1.0 carbon-nitrogen hydrolase family protein compare
SGL_RS03300 +0.2 1.5 pilus motility taxis protein HmpF compare
SGL_RS11810 +0.2 1.9 urea ABC transporter substrate-binding protein compare
SGL_RS12630 +0.2 1.1 SH3 domain-containing protein compare
SGL_RS04730 +0.2 1.4 N-acetylmuramoyl-L-alanine amidase compare
SGL_RS01995 +0.2 1.1 biopolymer transporter ExbD compare


Specific Phenotypes

None in this experiment

For Synechocystis sp000284455 PCC 6803 in metal stress experiments

For metal stress Sodium m-arsenite across organisms