Experiment set1S132 for Synechocystis sp000284455 PCC 6803

Compare to:

growth in full media supplemented with 5 .M CuSO4 but diluted to prevent light attenuation

200 most detrimental genes:

  gene name fitness t score description  
SGL_RS16060 +5.5 43.5 efflux RND transporter periplasmic adaptor subunit compare
SGL_RS16050 +5.2 48.5 two-component system sensor histidine kinase RppB compare
SGL_RS16055 +5.2 43.7 two-component system response regulator RppA compare
SGL_RS13490 +3.2 15.9 aspartate aminotransferase compare
SGL_RS18115 +3.1 10.8 DUF3727 domain-containing protein compare
SGL_RS05115 +3.1 7.6 hypothetical protein compare
SGL_RS14015 +3.1 21.9 AI-2E family transporter compare
SGL_RS06340 +2.9 17.7 response regulator transcription factor compare
SGL_RS13185 +2.9 19.2 AI-2E family transporter compare
SGL_RS14300 +2.9 24.7 HAMP domain-containing sensor histidine kinase compare
SGL_RS14245 +2.8 24.3 TMEM165/GDT1 family protein compare
SGL_RS09925 +2.8 24.8 apolipoprotein N-acyltransferase compare
SGL_RS05380 +2.7 8.1 monovalent cation/H(+) antiporter subunit G compare
SGL_RS08520 +2.7 15.5 metalloregulator ArsR/SmtB family transcription factor compare
SGL_RS12235 +2.6 5.1 aminopeptidase P N-terminal domain-containing protein compare
SGL_RS18475 +2.6 12.4 metalloregulator ArsR/SmtB family transcription factor compare
SGL_RS05375 +2.6 5.9 hypothetical protein compare
SGL_RS08265 +2.5 14.8 hypothetical protein compare
SGL_RS05390 +2.5 10.0 Na(+)/H(+) antiporter subunit B compare
SGL_RS04215 +2.5 10.3 MlaE family lipid ABC transporter permease subunit compare
SGL_RS07940 +2.5 13.3 type II secretion system protein compare
SGL_RS18310 +2.4 12.3 class I SAM-dependent methyltransferase compare
SGL_RS05385 +2.4 16.6 DUF4040 domain-containing protein compare
SGL_RS07650 +2.4 14.8 aminoglycoside phosphotransferase family protein compare
SGL_RS04315 +2.3 10.7 ABC transporter ATP-binding protein compare
SGL_RS04320 +2.3 13.0 hypothetical protein compare
SGL_RS19170 +2.3 4.1 chlorophyll a/b-binding protein compare
SGL_RS03950 +2.3 17.1 homocysteine biosynthesis protein compare
SGL_RS04310 +2.3 12.9 MlaD family protein compare
SGL_RS08535 +2.3 7.7 NIL domain-containing protein compare
SGL_RS12985 +2.2 6.4 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase compare
SGL_RS18305 +2.2 12.2 hypothetical protein compare
SGL_RS03265 +2.2 4.7 photosystem II complex extrinsic protein PsbU compare
SGL_RS13770 +2.2 4.9 DUF3082 domain-containing protein compare
SGL_RS07930 +2.2 15.8 hypothetical protein compare
SGL_RS06595 +2.2 6.9 CmpA/NrtA family ABC transporter substrate-binding protein compare
SGL_RS07495 +2.1 18.4 GH116 family glycosyl hydrolase compare
SGL_RS09390 +2.1 13.6 pentapeptide repeat-containing protein compare
SGL_RS09890 +2.1 4.4 DUF3007 family protein compare
SGL_RS06585 +2.1 6.2 nitrate ABC transporter ATP-binding protein compare
SGL_RS04710 +2.1 4.5 GNAT family N-acetyltransferase compare
SGL_RS04650 +2.1 16.4 tetratricopeptide repeat protein compare
SGL_RS18105 +2.0 18.3 anhydro-N-acetylmuramic acid kinase compare
SGL_RS20080 +2.0 5.1 DUF4335 domain-containing protein compare
SGL_RS05500 +2.0 13.4 ribonuclease R compare
SGL_RS04445 +2.0 15.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
SGL_RS03245 +2.0 16.8 Fe(3+) ABC transporter substrate-binding protein compare
SGL_RS02660 +2.0 4.4 L-threonylcarbamoyladenylate synthase compare
SGL_RS11850 +2.0 10.2 hypothetical protein compare
SGL_RS02845 +2.0 3.0 thylakoid membrane protein compare
SGL_RS09715 +1.9 9.3 pitrilysin family protein compare
SGL_RS05370 +1.9 4.8 Na+/H+ antiporter subunit E compare
SGL_RS15920 +1.9 11.7 GNAT family N-acetyltransferase compare
SGL_RS07660 +1.9 6.1 ferredoxin family protein compare
SGL_RS06275 +1.8 5.8 hypothetical protein compare
SGL_RS05480 +1.8 8.3 FAD-dependent oxidoreductase compare
SGL_RS07105 +1.8 10.9 precorrin-6Y C5,15-methyltransferase subunit CbiT compare
SGL_RS13920 +1.8 5.0 hypothetical protein compare
SGL_RS06635 +1.7 4.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
SGL_RS11040 +1.7 13.1 TMEM165/GDT1 family protein compare
SGL_RS11855 +1.7 4.9 YtxH domain-containing protein compare
SGL_RS08075 +1.6 10.0 peroxiredoxin compare
SGL_RS07305 +1.6 8.8 N-acetylmuramic acid 6-phosphate etherase compare
SGL_RS12555 +1.6 8.8 alpha-mannosidase compare
SGL_RS09430 +1.6 13.5 leucyl aminopeptidase compare
SGL_RS11985 +1.6 2.7 LysR family transcriptional regulator compare
SGL_RS14360 +1.6 7.3 carbon-nitrogen hydrolase family protein compare
SGL_RS14160 +1.6 4.6 anti-sigma factor compare
SGL_RS12210 +1.6 9.1 type IV pilus twitching motility protein PilT compare
SGL_RS14490 +1.6 1.2 hypothetical protein compare
SGL_RS03010 +1.6 10.6 4-alpha-glucanotransferase compare
SGL_RS16840 +1.5 9.6 TMEM165/GDT1 family protein compare
SGL_RS07945 +1.5 2.6 type IV pilin-like G/H family protein compare
SGL_RS14020 +1.5 2.5 hypothetical protein compare
SGL_RS09795 +1.5 11.7 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase compare
SGL_RS09920 +1.5 9.0 hypothetical protein compare
SGL_RS08605 +1.5 5.4 DUF3120 domain-containing protein compare
SGL_RS07165 +1.4 3.7 M23 family metallopeptidase compare
SGL_RS15060 +1.4 8.6 PstS family phosphate ABC transporter substrate-binding protein compare
SGL_RS16705 +1.4 6.8 diadenylate cyclase CdaA compare
SGL_RS05340 +1.3 5.7 MBL fold metallo-hydrolase compare
SGL_RS10340 +1.3 10.1 AGE family epimerase/isomerase compare
SGL_RS11945 +1.3 9.4 sirohydrochlorin chelatase compare
SGL_RS15215 +1.3 3.9 RrF2 family transcriptional regulator compare
SGL_RS13915 +1.3 4.1 tRNA-Ala compare
SGL_RS03775 +1.3 5.4 membrane protein compare
SGL_RS06590 +1.3 4.6 nitrate ABC transporter permease compare
SGL_RS18030 +1.2 7.1 SRPBCC family protein compare
SGL_RS07310 +1.2 5.2 DUF3110 domain-containing protein compare
SGL_RS07675 +1.2 3.9 HpsJ family protein compare
SGL_RS12600 +1.2 2.8 DUF2062 domain-containing protein compare
SGL_RS15480 +1.2 8.5 biopolymer transporter ExbD compare
SGL_RS10160 +1.2 6.2 B12-binding domain-containing radical SAM protein compare
SGL_RS01155 +1.2 5.7 restriction endonuclease subunit S compare
SGL_RS17115 +1.2 6.5 DUF3370 domain-containing protein compare
SGL_RS02515 +1.2 4.3 M56 family metallopeptidase compare
SGL_RS16955 +1.2 7.8 site-2 protease family protein compare
SGL_RS12615 +1.2 1.8 helix-turn-helix transcriptional regulator compare
SGL_RS07300 +1.2 6.9 site-2 protease family protein compare
SGL_RS09660 +1.2 4.8 RelA/SpoT family protein compare
SGL_RS15490 +1.2 4.9 MotA/TolQ/ExbB proton channel family protein compare
SGL_RS09560 +1.2 8.6 SDR family oxidoreductase compare
SGL_RS04525 +1.1 3.2 photosynthesis system II assembly factor Ycf48 compare
SGL_RS15290 +1.1 5.4 6-carboxytetrahydropterin synthase QueD compare
SGL_RS02975 +1.1 7.6 transglutaminase domain-containing protein compare
SGL_RS06755 +1.1 6.3 bacterioferritin-associated ferredoxin compare
SGL_RS17380 +1.1 10.0 glutamate synthase large subunit compare
SGL_RS19495 +1.1 7.0 hypothetical protein compare
SGL_RS05355 +1.1 7.7 cation:proton antiporter compare
SGL_RS15500 +1.1 9.2 hypothetical protein compare
SGL_RS17495 +1.1 4.3 peptidoglycan editing factor PgeF compare
SGL_RS10605 +1.1 7.4 Crp/Fnr family transcriptional regulator compare
SGL_RS03440 +1.1 5.8 PAM68 family protein compare
SGL_RS06460 +1.1 4.3 fatty acid desaturase compare
SGL_RS05300 +1.1 5.2 M23 family metallopeptidase compare
SGL_RS05060 +1.0 2.1 hypothetical protein compare
SGL_RS03610 +1.0 2.2 hypothetical protein compare
SGL_RS16365 +1.0 4.2 PetM family cytochrome b6-f complex subunit 7 compare
SGL_RS02330 +1.0 6.5 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
SGL_RS15505 +1.0 6.8 pentapeptide repeat-containing protein compare
SGL_RS09550 +1.0 8.4 acylneuraminate cytidylyltransferase compare
SGL_RS15835 +1.0 7.6 TrmJ/YjtD family RNA methyltransferase compare
SGL_RS05170 +1.0 2.3 hypothetical protein compare
SGL_RS10955 +1.0 2.1 hypothetical protein compare
SGL_RS09935 +1.0 7.6 sugar transferase compare
SGL_RS12200 +1.0 8.5 efflux RND transporter permease subunit compare
SGL_RS17185 +1.0 3.8 rhomboid family intramembrane serine protease compare
SGL_RS09605 +1.0 6.5 efflux RND transporter permease subunit compare
SGL_RS01855 +1.0 3.5 AIPR family protein compare
SGL_RS13905 +1.0 3.4 hypothetical protein compare
SGL_RS02235 +0.9 5.0 efflux RND transporter periplasmic adaptor subunit compare
SGL_RS04190 +0.9 7.5 AMP-binding protein compare
SGL_RS14315 +0.9 7.7 folate/biopterin family MFS transporter compare
SGL_RS05725 +0.9 1.9 tRNA pseudouridine(38-40) synthase TruA compare
SGL_RS03065 +0.9 2.3 heat-inducible transcriptional repressor HrcA compare
SGL_RS07975 +0.9 7.2 RNA polymerase sigma factor, RpoD/SigA family compare
SGL_RS10890 +0.9 6.8 LD-carboxypeptidase compare
SGL_RS03965 +0.9 6.7 R3H domain-containing nucleic acid-binding protein compare
SGL_RS17310 +0.9 6.4 glycoside hydrolase 100 family protein compare
SGL_RS11920 +0.9 2.9 KH domain-containing protein compare
SGL_RS14630 +0.9 5.1 pentapeptide repeat-containing protein compare
SGL_RS12205 +0.9 7.5 efflux RND transporter periplasmic adaptor subunit compare
SGL_RS14780 +0.9 5.7 cyanase compare
SGL_RS11500 +0.9 6.2 glycoside hydrolase family 3 N-terminal domain-containing protein compare
SGL_RS06370 +0.9 4.9 cysteine synthase A compare
SGL_RS15485 +0.9 4.3 biopolymer transporter ExbD compare
SGL_RS01860 +0.9 4.5 CAP domain-containing protein compare
SGL_RS09585 +0.9 7.0 glycosyltransferase family 2 protein compare
SGL_RS04490 +0.9 2.0 2TM domain-containing protein compare
SGL_RS11910 +0.8 4.5 hemolysin family protein compare
SGL_RS16440 +0.8 6.7 O-antigen ligase family protein compare
SGL_RS06820 +0.8 1.5 hypothetical protein compare
SGL_RS00560 +0.8 1.5 Rpn family recombination-promoting nuclease/putative transposase compare
SGL_RS20030 +0.8 5.1 iron uptake porin compare
SGL_RS10430 +0.8 5.3 S1 RNA-binding domain-containing protein compare
SGL_RS05490 +0.8 2.8 hypothetical protein compare
SGL_RS03650 +0.8 1.1 FkbM family methyltransferase compare
SGL_RS15495 +0.8 6.4 Fe(3+) ABC transporter substrate-binding protein compare
SGL_RS16335 +0.8 5.5 preQ(1) synthase compare
SGL_RS19535 +0.8 5.5 hypothetical protein compare
SGL_RS10870 +0.8 5.4 penicillin-binding protein 1A compare
SGL_RS02740 +0.8 4.5 HAS-barrel domain-containing protein compare
SGL_RS03240 +0.8 5.6 YggT family protein compare
SGL_RS06115 +0.8 6.4 DUF1868 domain-containing protein compare
SGL_RS03465 +0.8 4.2 allophycocyanin subunit alpha-B compare
SGL_RS12150 +0.8 6.3 hypothetical protein compare
SGL_RS16095 +0.8 5.4 Zn(II)-sensing metalloregulatory transcriptional repressor ZiaR compare
SGL_RS04785 +0.8 2.8 CPP1-like family protein compare
SGL_RS19730 +0.8 2.3 DNA cytosine methyltransferase compare
SGL_RS00445 +0.8 2.5 type II toxin-antitoxin system prevent-host-death family antitoxin compare
SGL_RS03270 +0.8 3.9 HNH endonuclease compare
SGL_RS17575 +0.8 3.1 DUF1815 family protein compare
SGL_RS18985 +0.7 1.4 transposase compare
SGL_RS08025 +0.7 0.7 tetratricopeptide repeat protein compare
SGL_RS08925 +0.7 4.3 hypothetical protein compare
SGL_RS18770 +0.7 1.9 photosystem II reaction center protein PsbN compare
SGL_RS16775 +0.7 4.8 asparagine--tRNA ligase compare
SGL_RS20075 +0.7 4.3 type II secretion system F family protein compare
SGL_RS13220 +0.7 5.0 ribonuclease III compare
SGL_RS16370 +0.7 6.6 tRNA guanosine(34) transglycosylase Tgt compare
SGL_RS19475 +0.7 1.3 hypothetical protein compare
SGL_RS11205 +0.7 3.8 FHA domain-containing protein compare
SGL_RS12460 +0.7 5.0 matrixin family metalloprotease compare
SGL_RS02355 +0.7 1.7 hypothetical protein compare
SGL_RS06950 +0.7 5.0 DUF2079 domain-containing protein compare
SGL_RS12025 +0.7 3.9 NAD(+) kinase compare
SGL_RS02850 +0.7 3.5 uracil phosphoribosyltransferase compare
SGL_RS05070 +0.7 2.6 2Fe-2S iron-sulfur cluster-binding protein compare
SGL_RS10550 +0.7 3.1 GUN4 domain-containing protein compare
SGL_RS11325 +0.7 1.2 pitrilysin family protein compare
SGL_RS08760 +0.7 1.7 hypothetical protein compare
SGL_RS02195 +0.7 0.9 nucleoside monophosphate kinase compare
SGL_RS20175 +0.7 1.6 hypothetical protein compare
SGL_RS07750 +0.7 3.9 7-carboxy-7-deazaguanine synthase QueE compare
SGL_RS19875 +0.7 0.8 IS1 family transposase compare
SGL_RS12690 +0.7 2.9 hypothetical protein compare
SGL_RS17860 +0.7 3.0 Holliday junction resolvase RuvX compare
SGL_RS09240 +0.7 1.9 restriction endonuclease compare
SGL_RS11075 +0.7 3.9 ABC-2 family transporter protein compare
SGL_RS03490 +0.7 3.9 YaaW family protein compare


Specific Phenotypes

None in this experiment

For Synechocystis sp000284455 PCC 6803 in metal stress experiments

For metal stress Copper (II) sulfate pentahydrate across organisms