Experiment set1IT081 for Pseudomonas putida KT2440

Compare to:

Glucose carbon source (20mM)

200 most important genes:

  gene name fitness t score description  
PP_1079 -5.6 -3.9 Ornithine carbamoyltransferase compare
PP_0293 -5.6 -3.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3511 -5.6 -5.4 Branched-chain-amino-acid aminotransferase compare
PP_0290 -5.6 -5.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4909 -5.4 -3.7 phosphoserine phosphatase compare
PP_0420 -5.4 -6.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1988 -5.4 -5.2 3-isopropylmalate dehydrogenase compare
PP_4678 -5.2 -9.4 Ketol-acid reductoisomerase compare
PP_2168 -5.1 -8.5 Transaldolase compare
PP_0967 -5.1 -8.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1088 -5.1 -9.7 Argininosuccinate synthase compare
PP_0082 -5.0 -4.9 tryptophan synthase alpha chain compare
PP_0966 -5.0 -8.4 Histidinol dehydrogenase compare
PP_1995 -5.0 -7.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4679 -5.0 -4.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0289 -4.9 -6.7 Imidazoleglycerol-phosphate dehydratase compare
PP_4999 -4.8 -3.3 dihydroorotase-like protein compare
PP_5185 -4.8 -6.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5097 -4.8 -10.6 homoserine O-acetyltransferase compare
PP_1664 -4.7 -4.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_5015 -4.7 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5014 -4.7 -3.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_4799 -4.7 -3.2 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4696 -4.7 -7.1 Nitrogen regulation protein NR(I) compare
PP_0760 -4.7 -4.5 conserved membrane protein of unknown function compare
PP_0292 -4.7 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0417 -4.6 -15.6 Anthranilate synthase component 1 compare
PP_0184 -4.6 -8.8 Argininosuccinate lyase compare
PP_0691 -4.6 -5.4 Glutamate 5-kinase compare
PP_4680 -4.6 -10.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5289 -4.5 -5.3 Acetylglutamate kinase compare
PP_0965 -4.4 -9.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5098 -4.3 -7.7 methionine biosynthesis protein MetW compare
PP_1986 -4.3 -2.9 3-isopropylmalate dehydratase small subunit compare
PP_0083 -4.1 -6.3 tryptophan synthase beta chain compare
PP_4723 -4.1 -6.8 Carbamoyl-phosphate synthase large chain compare
PP_4890 -4.1 -6.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_1985 -4.0 -5.7 3-isopropylmalate dehydratase large subunit compare
PP_5128 -3.9 -10.0 Dihydroxy-acid dehydratase compare
PP_4693 -3.9 -9.6 RNA polymerase-binding transcription factor DksA compare
PP_5348 -3.8 -8.7 Transcriptional regulator, LysR family compare
PP_5347 -3.7 -10.7 pyruvate carboxylase subunit A compare
PP_0421 -3.6 -7.6 Anthranilate phosphoribosyltransferase compare
PP_0422 -3.6 -6.4 Indole-3-glycerol phosphate synthase compare
PP_2371 -3.6 -5.5 Sulphite reductase hemoprotein, beta subunit compare
PP_5155 -3.5 -5.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4700 -3.5 -4.7 pantothenate synthetase compare
PP_5346 -3.5 -9.1 pyruvate carboxylase subunit B compare
PP_2001 -3.4 -10.3 O-succinylhomoserine sulfhydrylase compare
PP_1025 -3.4 -11.3 2-isopropylmalate synthase compare
PP_5303 -3.4 -6.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1022 -3.4 -7.4 glucose 6-phosphate-1-dehydrogenase compare
PP_4724 -3.3 -3.9 Carbamoyl-phosphate synthase small chain compare
PP_3999 -3.3 -4.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2327 -3.0 -8.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1912 -2.9 -5.5 Phosphate acyltransferase compare
PP_0291 -2.7 -3.2 conserved protein of unknown function compare
PP_1656 -2.7 -6.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_0164 -2.6 -8.1 conserved protein of unknown function compare
PP_0232 -2.6 -2.5 ATP-binding taurine transporter subunit compare
PP_0339 -2.6 -3.1 Pyruvate dehydrogenase E1 component compare
PP_2328 -2.6 -5.4 Phosphoadenosine phosphosulfate reductase compare
PP_5350 -2.3 -5.5 Transcriptional regulator, RpiR family compare
PP_0393 -2.2 -3.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2370 -2.2 -2.9 conserved protein of unknown function compare
PP_0218 -1.9 -8.7 Sensory box protein compare
PP_2253 -1.9 -2.4 Transcriptional regulator, GntR family compare
PP_2000 -1.8 -3.3 amidophosphoribosyl transferase compare
PP_3790 -1.7 -7.9 diaminopimelate epimerase compare
PP_1362 -1.7 -4.8 pyruvate kinase II compare
PP_1493 -1.7 -3.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4917 -1.7 -5.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5114 -1.7 -2.6 putative adenine methyltransferase compare
PP_4964 -1.7 -3.7 D-erythrose 4-phosphate dehydrogenase compare
PP_4804 -1.6 -4.7 RlpA-like lipoprotein compare
PP_4364 -1.6 -3.7 putative Anti-sigma F factor antagonist compare
PP_0065 -1.6 -4.4 NAD-binding component of TrK potassium transporter compare
PP_0673 -1.6 -3.0 conserved protein of unknown function compare
PP_5095 -1.5 -2.2 pyrroline-5-carboxylate reductase compare
PP_1733 -1.5 -3.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_1629 -1.5 -6.8 Protein RecA compare
PP_5216 -1.4 -2.3 exopolyphosphatase compare
PP_1237 -1.4 -2.6 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4122 -1.4 -3.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_3417 -1.3 -4.1 D-gluconate transporter compare
PP_5048 -1.2 -4.6 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0261 -1.2 -4.6 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_2378 -1.2 -2.9 Fe/S biogenesis protein NfuA compare
PP_1216 -1.2 -2.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5227 -1.2 -6.6 diaminopimelate decarboxylase compare
PP_0914 -1.2 -6.1 GGDEF domain protein compare
PP_3580 -1.2 -1.9 conserved protein of unknown function compare
PP_3880 -1.2 -1.6 conserved exported protein of unknown function compare
PP_1589 -1.2 -6.7 uridylyltransferase compare
PP_2402 -1.1 -2.3 putative Sensor histidine kinase compare
PP_1697 -1.1 -1.9 transcriptional regulator, GntR family compare
PP_5035 -1.1 -4.1 Histidine utilization repressor compare
PP_1994 -1.1 -2.7 tRNA pseudouridine (38-40)synthase compare
PP_4824 -1.1 -5.5 Sensor histidine kinase/response regulator compare
PP_5652 -1.1 -2.4 conserved protein of unknown function, phage origin compare
PP_4902 -1.0 -2.5 Oligoribonuclease compare
PP_1217 -1.0 -4.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0846 -1.0 -1.7 DnaK-like molecular chaperone specific for IscU compare
PP_1770 -1.0 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_0801 -1.0 -1.4 conserved exported protein of unknown function compare
PP_3307 -1.0 -1.9 conserved protein of unknown function compare
PP_5309 -1.0 -4.8 oxidative and nitrosative stress transcriptional dual regulator compare
PP_5327 -1.0 -3.3 putative phosphate ABC transporter, permease subunit compare
PP_0980 -0.9 -3.9 Probable cytosol aminopeptidase compare
PP_2976 -0.9 -1.3 putative transposase compare
PP_4817 -0.9 -2.3 MaoC domain protein compare
PP_5310 -0.9 -4.3 junction-specific ATP-dependent DNA helicase compare
PP_2302 -0.9 -4.2 DNA-binding, ATP-dependent protease compare
PP_2088 -0.9 -1.9 RNA polymerase sigma factor SigX compare
PP_1261 -0.9 -2.3 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_2144 -0.9 -3.0 Transcriptional regulator, TetR family compare
PP_3930 -0.9 -2.3 conserved exported protein of unknown function compare
PP_2031 -0.9 -2.0 conserved protein of unknown function compare
PP_1054 -0.9 -1.2 Type II secretion pathway protein XcpZ compare
PP_5313 -0.9 -1.4 DNA-binding protein HU-alpha compare
PP_0401 -0.9 -1.8 Ribosomal RNA small subunit methyltransferase A compare
PP_3926 -0.9 -1.2 short-chain dehydrogenase compare
PP_4546 -0.9 -3.3 ATP-dependent helicase HrpA compare
PP_2345 -0.9 -2.5 conserved exported protein of unknown function compare
PP_1468 -0.9 -1.7 Tyrosine recombinase XerD compare
PP_1553 -0.9 -1.3 conserved protein of unknown function compare
PP_0127 -0.9 -3.3 Thiol:disulfide interchange protein compare
PP_5575 -0.9 -1.7 conserved protein of unknown function compare
PP_1004 -0.9 -1.8 conserved protein of unknown function compare
PP_4058 -0.9 -5.4 1,4-alpha-glucan branching enzyme compare
PP_4109 -0.9 -2.3 conserved protein of unknown function compare
PP_4701 -0.9 -0.9 glucose-6-phosphate isomerase compare
PP_2348 -0.9 -3.2 Sensor histidine kinase compare
PP_4004 -0.8 -2.7 DNA translocase FtsK compare
PP_1138 -0.8 -2.9 branched chain amino acid transporter - ATP binding subunit compare
PP_4131 -0.8 -3.9 NADH-quinone oxidoreductase subunit N compare
PP_2433 -0.8 -1.5 conserved protein of unknown function compare
PP_2441 -0.8 -1.4 conserved protein of unknown function compare
PP_1783 -0.8 -2.5 dTDP-glucose pyrophosphorylase compare
PP_4045 -0.8 -2.2 conserved protein of unknown function compare
PP_5628 -0.8 -1.8 conserved protein of unknown function compare
PP_2631 -0.8 -1.6 putative cellulose biosynthesis, BcsF/YhjT compare
PP_3730 -0.8 -1.9 Transcriptional regulatory protein AruR compare
PP_0809 -0.8 -5.1 disulfide bond formation protein B compare
PP_1742 -0.8 -2.4 conserved inner membrane protein of unknown function compare
PP_5295 -0.8 -0.9 conserved protein of unknown function compare
PP_2794 -0.8 -1.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_4529 -0.8 -2.4 conserved protein of unknown function compare
PP_2633 -0.8 -1.2 conserved protein of unknown function compare
PP_4581 -0.8 -2.2 putative amidotransferase compare
PP_1644 -0.8 -2.8 NAD(P)H dehydrogenase (quinone) compare
PP_5328 -0.8 -1.5 putative phosphate transport system permease protein compare
PP_4094 -0.8 -1.4 conserved protein of unknown function compare
PP_5329 -0.8 -1.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1304 -0.8 -4.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2142 -0.8 -1.3 Cell division inhibitor SulA compare
PP_1215 -0.8 -1.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_0123 -0.8 -4.7 DNA polymerase I, 5 compare
PP_1009 -0.8 -2.7 glyceraldehyde-3-phosphate dehydrogenase compare
PP_2716 -0.8 -1.8 arsenate reductase compare
PP_2459 -0.8 -1.0 ribose pyranase compare
PP_1637 -0.7 -2.5 Transcriptional regulator, LysR family compare
PP_0630 -0.7 -0.9 DNA gyrase inhibitor YacG compare
PP_1017 -0.7 -3.4 mannose/glucose ABC transporter, permease protein conserved
PP_4910 -0.7 -1.8 conserved protein of unknown function compare
PP_1128 -0.7 -2.1 OmpA family protein compare
PP_0694 -0.7 -2.9 conserved protein of unknown function compare
PP_1367 -0.7 -3.4 formyltetrahydrofolate hydrolase compare
PP_2189 -0.7 -2.1 conserved protein of unknown function compare
PP_3789 -0.7 -3.6 putative Efflux transporter compare
PP_4308 -0.7 -1.5 Transcriptional regulator, AsnC family compare
PP_4227 -0.7 -0.9 conserved protein of unknown function compare
PP_3506 -0.7 -2.2 Magnesium chelatase, subunit ChII compare
PP_5580 -0.7 -1.5 protein of unknown function compare
PP_5491 -0.7 -1.8 conserved protein of unknown function with SEC-C motif domain compare
PP_4379 -0.7 -2.2 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0377 -0.7 -1.1 coenzyme PQQ synthesis protein D compare
PP_1826 -0.7 -1.2 Hydrolase, isochorismatase family compare
PP_1444 -0.7 -4.8 quinoprotein glucose dehydrogenase compare
PP_1012 -0.7 -2.2 DNA-binding response regulator compare
PP_5000 -0.7 -1.4 peptidase component of the ATP-dependent HslVU protease compare
PP_4479 -0.7 -1.9 arginine N-succinyltransferase, subunit beta compare
PP_0378 -0.7 -3.4 Pyrroloquinoline-quinone synthase compare
PP_3712 -0.7 -3.0 conserved protein of unknown function compare
PP_2737 -0.7 -0.9 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_3040 -0.7 -1.6 Pyocin R2_PP, holin compare
PP_4895 -0.7 -2.2 tRNA dimethylallyltransferase compare
PP_0108 -0.7 -2.4 conserved protein of unknown function compare
PP_2756 -0.7 -1.9 conserved protein of unknown function compare
PP_2526 -0.7 -1.5 conserved membrane protein of unknown function compare
PP_4695 -0.7 -4.1 Sensory box histidine kinase compare
PP_4223 -0.7 -1.1 diaminobutyrate-2-oxoglutarate transaminase compare
PP_2409 -0.7 -1.9 cobalt-zinc-cadmium resistance protein compare
PP_0634 -0.7 -2.7 Fimbrial protein compare
PP_1303 -0.7 -3.2 Sulfate adenylyltransferase subunit 2 compare
PP_4121 -0.7 -3.0 NADH-quinone oxidoreductase subunit C/D compare
PP_3332 -0.7 -1.9 putative cytochrome c-type protein compare
PP_2650 -0.6 -1.7 putative 4-hydroxybutyrate dehydrogenase compare
PP_2653 -0.6 -1.9 Transcriptional regulator, Cro/CI family compare
PP_1322 -0.6 -1.0 putative Lipoprotein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms