Experiment set1IT079 for Variovorax sp. OAS795

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L-Malic acid disodium salt monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS20615 -7.0 -6.8 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS16690 -6.8 -4.7 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS16595 -6.7 -5.4 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS23225 -5.8 -17.2 glutamate synthase-related protein compare
ABID97_RS15375 -5.5 -3.8 DUF934 domain-containing protein compare
ABID97_RS01565 -5.5 -13.1 DNA starvation/stationary phase protection protein compare
ABID97_RS16600 -5.3 -9.5 CysB family HTH-type transcriptional regulator compare
ABID97_RS15380 -5.2 -11.3 nitrite/sulfite reductase compare
ABID97_RS06575 -4.9 -7.5 trehalose-phosphatase compare
ABID97_RS05250 -4.9 -3.4 anthranilate synthase component I compare
ABID97_RS05260 -4.9 -2.0 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS17970 -4.8 -7.2 protein TolQ compare
ABID97_RS09180 -4.6 -3.2 DNA polymerase I compare
ABID97_RS17635 -4.4 -5.3 presqualene diphosphate synthase HpnD compare
ABID97_RS14160 -4.4 -7.4 cell division protein ZapE compare
ABID97_RS10885 -4.4 -7.3 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS25015 -4.2 -2.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS13990 -4.1 -2.8 amino acid aminotransferase compare
ABID97_RS23230 -4.1 -17.3 transposase compare
ABID97_RS07405 -4.0 -11.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS16695 -3.9 -19.6 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS15370 -3.9 -14.4 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS08425 -3.9 -5.3 tryptophan synthase subunit alpha compare
ABID97_RS06345 -3.7 -3.6 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS15365 -3.7 -5.0 sulfate adenylyltransferase subunit CysD compare
ABID97_RS12180 -3.6 -2.5 hypothetical protein compare
ABID97_RS02600 -3.6 -4.2 homoserine O-acetyltransferase compare
ABID97_RS12140 -3.6 -8.1 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS23220 -3.5 -1.8 glutamate synthase subunit beta compare
ABID97_RS05275 -3.5 -2.4 anthranilate phosphoribosyltransferase compare
ABID97_RS07435 -3.5 -11.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS07430 -3.5 -8.5 pantoate--beta-alanine ligase compare
ABID97_RS16535 -3.4 -9.5 arginine/lysine/ornithine decarboxylase compare
ABID97_RS23425 -3.4 -3.1 tRNA-Pro compare
ABID97_RS14095 -3.4 -12.8 PAS domain S-box protein compare
ABID97_RS15360 -3.3 -6.6 GTP-binding protein compare
ABID97_RS15465 -3.2 -16.9 sulfate ABC transporter substrate-binding protein compare
ABID97_RS05365 -3.1 -4.7 DUF4390 domain-containing protein compare
ABID97_RS13860 -3.1 -9.5 hypothetical protein compare
ABID97_RS26605 -3.1 -3.0 sigma-54 dependent transcriptional regulator compare
ABID97_RS07000 -3.0 -9.9 threonine ammonia-lyase, biosynthetic compare
ABID97_RS21150 -3.0 -11.0 FAD-dependent oxidoreductase compare
ABID97_RS07500 -3.0 -2.8 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS25525 -2.9 -4.0 LacI family DNA-binding transcriptional regulator compare
ABID97_RS05280 -2.9 -1.9 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS23455 -2.8 -3.9 hypothetical protein compare
ABID97_RS05755 -2.8 -2.7 glycosyltransferase compare
ABID97_RS08435 -2.8 -1.9 phosphoribosylanthranilate isomerase compare
ABID97_RS06565 -2.8 -16.0 alpha,alpha-trehalose-phosphate synthase (UDP-forming) compare
ABID97_RS07775 -2.8 -3.0 phosphoribosylglycinamide formyltransferase compare
ABID97_RS05765 -2.7 -1.9 UDP-glucose 4-epimerase GalE compare
ABID97_RS03800 -2.7 -2.6 O-antigen ligase family protein compare
ABID97_RS26600 -2.7 -5.3 ATP-binding protein compare
ABID97_RS04890 -2.7 -7.8 cation:proton antiporter compare
ABID97_RS23915 -2.7 -4.4 heme o synthase compare
ABID97_RS06755 -2.7 -13.5 putative Na+/H+ antiporter compare
ABID97_RS24705 -2.6 -6.9 response regulator compare
ABID97_RS06450 -2.6 -1.8 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS04885 -2.6 -17.4 YbdK family carboxylate-amine ligase compare
ABID97_RS02110 -2.6 -15.6 type IV pilus modification protein PilV compare
ABID97_RS15665 -2.6 -9.8 [protein-PII] uridylyltransferase compare
ABID97_RS04500 -2.6 -1.8 HPr(Ser) kinase/phosphatase compare
ABID97_RS02135 -2.6 -6.9 GspH/FimT family pseudopilin compare
ABID97_RS06460 -2.6 -1.8 sigma 54-interacting transcriptional regulator compare
ABID97_RS00255 -2.6 -15.4 type IV pilus twitching motility protein PilT compare
ABID97_RS03680 -2.6 -7.9 lysophospholipid transporter LplT compare
ABID97_RS17590 -2.5 -12.1 endopeptidase La compare
ABID97_RS16290 -2.5 -9.4 protein-glutamate O-methyltransferase CheR compare
ABID97_RS17850 -2.5 -1.3 tetratricopeptide repeat protein compare
ABID97_RS05370 -2.4 -5.7 ATP-binding protein compare
ABID97_RS26540 -2.4 -4.8 dihydrolipoyl dehydrogenase compare
ABID97_RS29270 -2.4 -1.3 cytochrome b561 domain-containing protein compare
ABID97_RS23440 -2.3 -14.0 A24 family peptidase compare
ABID97_RS02125 -2.3 -18.5 PilC/PilY family type IV pilus protein compare
ABID97_RS08775 -2.2 -2.1 ribosome small subunit-dependent GTPase A compare
ABID97_RS03910 -2.2 -2.1 orotate phosphoribosyltransferase compare
ABID97_RS23430 -2.2 -12.5 type IV-A pilus assembly ATPase PilB compare
ABID97_RS25340 -2.2 -8.8 apolipoprotein N-acyltransferase compare
ABID97_RS05750 -2.2 -2.9 glycosyltransferase compare
ABID97_RS24920 -2.2 -2.3 Holliday junction branch migration protein RuvA compare
ABID97_RS02120 -2.2 -13.0 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS23450 -2.2 -5.7 MBOAT family protein compare
ABID97_RS06275 -2.2 -2.0 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS02115 -2.2 -9.1 PilW family protein compare
ABID97_RS08480 -2.1 -1.4 citrate synthase compare
ABID97_RS03805 -2.1 -1.4 ATP-binding protein compare
ABID97_RS05670 -2.1 -1.4 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS14625 -2.1 -4.5 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS17050 -2.1 -2.3 RlmE family RNA methyltransferase compare
ABID97_RS23435 -2.1 -13.1 type II secretion system F family protein compare
ABID97_RS26530 -2.0 -7.3 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS14975 -2.0 -4.1 hypothetical protein compare
ABID97_RS22705 -2.0 -9.4 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS02510 -2.0 -16.2 NADP-dependent malic enzyme compare
ABID97_RS02140 -2.0 -10.9 sugar transferase compare
ABID97_RS08220 -2.0 -11.7 phosphoenolpyruvate carboxylase compare
ABID97_RS03140 -1.9 -1.7 tRNA-Gly compare
ABID97_RS28990 -1.9 -5.6 aspartate 1-decarboxylase compare
ABID97_RS10295 -1.9 -1.8 winged helix-turn-helix transcriptional regulator compare
ABID97_RS01840 -1.9 -12.4 DUF1631 family protein compare
ABID97_RS08445 -1.9 -6.5 FimV/HubP family polar landmark protein compare
ABID97_RS01650 -1.8 -1.2 orotidine-5'-phosphate decarboxylase compare
ABID97_RS09935 -1.8 -9.9 hypothetical protein compare
ABID97_RS02790 -1.8 -12.4 penicillin-binding protein 1A compare
ABID97_RS02130 -1.8 -10.2 type IV pilin protein compare
ABID97_RS20425 -1.8 -2.7 DUF2818 family protein compare
ABID97_RS12405 -1.8 -1.8 peptidoglycan editing factor PgeF compare
ABID97_RS10695 -1.8 -7.3 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABID97_RS26535 -1.8 -1.2 dihydrolipoyllysine-residue acetyltransferase compare
ABID97_RS01825 -1.8 -13.1 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS23650 -1.8 -11.7 serine/threonine-protein kinase compare
ABID97_RS07410 -1.7 -5.8 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS06520 -1.7 -1.6 SAM-dependent methyltransferase compare
ABID97_RS08860 -1.7 -4.0 SDR family NAD(P)-dependent oxidoreductase compare
ABID97_RS14090 -1.7 -1.6 response regulator transcription factor compare
ABID97_RS10705 -1.7 -6.2 H-NS histone family protein compare
ABID97_RS06415 -1.7 -10.3 sigma-54 dependent transcriptional regulator compare
ABID97_RS03915 -1.7 -4.6 DUF4124 domain-containing protein compare
ABID97_RS02145 -1.7 -9.1 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS16985 -1.7 -4.0 transcriptional repressor LexA compare
ABID97_RS29385 -1.7 -2.3 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS02855 -1.7 -7.8 sensor histidine kinase N-terminal domain-containing protein compare
ABID97_RS23270 -1.7 -9.7 pilus assembly protein PilP compare
ABID97_RS24170 -1.7 -4.2 ATP-binding protein compare
ABID97_RS07415 -1.6 -10.0 quinolinate synthase NadA compare
ABID97_RS23265 -1.6 -6.7 type IV pilus secretin PilQ compare
ABID97_RS15995 -1.6 -4.8 PilZ domain-containing protein compare
ABID97_RS02455 -1.6 -3.7 nucleotidyltransferase family protein compare
ABID97_RS23940 -1.6 -7.0 cytochrome c oxidase subunit 3 compare
ABID97_RS23275 -1.6 -9.2 type 4a pilus biogenesis protein PilO compare
ABID97_RS02850 -1.6 -6.0 response regulator transcription factor compare
ABID97_RS06600 -1.6 -6.2 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS02200 -1.5 -12.6 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS03110 -1.5 -5.5 helix-turn-helix transcriptional regulator compare
ABID97_RS23380 -1.5 -10.2 lytic transglycosylase domain-containing protein compare
ABID97_RS23285 -1.5 -10.0 pilus assembly protein PilM compare
ABID97_RS06175 -1.5 -11.2 STAS domain-containing protein compare
ABID97_RS17200 -1.5 -12.1 ribonuclease R compare
ABID97_RS17595 -1.5 -7.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABID97_RS08710 -1.5 -5.7 polynucleotide adenylyltransferase PcnB compare
ABID97_RS06315 -1.5 -9.7 YqiA/YcfP family alpha/beta fold hydrolase compare
ABID97_RS17055 -1.5 -4.3 YhbY family RNA-binding protein compare
ABID97_RS23280 -1.5 -4.5 PilN domain-containing protein compare
ABID97_RS19380 -1.4 -3.4 2-methylcitrate synthase compare
ABID97_RS08430 -1.4 -1.9 tryptophan synthase subunit beta compare
ABID97_RS20020 -1.4 -2.3 LacI family DNA-binding transcriptional regulator compare
ABID97_RS16685 -1.4 -4.1 tol-pal system protein YbgF compare
ABID97_RS20610 -1.4 -4.8 DNA-binding protein YbiB compare
ABID97_RS02210 -1.4 -6.5 pilin compare
ABID97_RS02460 -1.4 -10.7 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS08330 -1.4 -9.2 RNA polymerase sigma factor RpoE compare
ABID97_RS08250 -1.4 -6.5 RluA family pseudouridine synthase compare
ABID97_RS24690 -1.4 -5.9 methyl-accepting chemotaxis protein compare
ABID97_RS23320 -1.4 -6.6 c-type cytochrome biogenesis protein CcsB compare
ABID97_RS13865 -1.3 -3.3 hypothetical protein compare
ABID97_RS09595 -1.3 -1.5 Arc family DNA-binding protein compare
ABID97_RS14265 -1.3 -5.9 protease modulator HflC compare
ABID97_RS08855 -1.3 -4.4 thiolase family protein compare
ABID97_RS28635 -1.3 -5.3 IclR family transcriptional regulator compare
ABID97_RS18205 -1.3 -2.9 XRE family transcriptional regulator compare
ABID97_RS08695 -1.3 -8.0 permease compare
ABID97_RS25085 -1.3 -3.0 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS04610 -1.3 -6.5 potassium transporter Kup compare
ABID97_RS22885 -1.3 -1.7 ABC transporter permease compare
ABID97_RS15470 -1.3 -2.5 NADPH-dependent FMN reductase compare
ABID97_RS21945 -1.3 -3.7 hemolysin family protein compare
ABID97_RS10385 -1.2 -1.9 MFS transporter compare
ABID97_RS23360 -1.2 -1.0 hypothetical protein compare
ABID97_RS07630 -1.2 -4.3 cytochrome o ubiquinol oxidase subunit III compare
ABID97_RS17640 -1.2 -2.4 hydroxysqualene dehydroxylase HpnE compare
ABID97_RS04480 -1.2 -2.1 magnesium/cobalt transporter CorA compare
ABID97_RS04825 -1.2 -6.7 hypothetical protein compare
ABID97_RS15490 -1.2 -3.6 FMNH2-dependent alkanesulfonate monooxygenase compare
ABID97_RS08200 -1.2 -6.3 LytTR family DNA-binding domain-containing protein compare
ABID97_RS14665 -1.2 -2.4 UvrD-helicase domain-containing protein compare
ABID97_RS25345 -1.2 -5.2 transporter associated domain-containing protein compare
ABID97_RS09940 -1.2 -5.7 nitrogen regulation protein NR(II) compare
ABID97_RS23655 -1.2 -3.3 YicC/YloC family endoribonuclease compare
ABID97_RS23970 -1.2 -8.4 DUF2244 domain-containing protein compare
ABID97_RS07440 -1.2 -6.8 L-aspartate oxidase compare
ABID97_RS20520 -1.2 -1.6 polyribonucleotide nucleotidyltransferase compare
ABID97_RS01595 -1.1 -4.9 tRNA guanosine(34) transglycosylase Tgt compare
ABID97_RS27720 -1.1 -1.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit compare
ABID97_RS17135 -1.1 -6.7 RIP metalloprotease RseP compare
ABID97_RS16785 -1.1 -2.1 transporter compare
ABID97_RS25280 -1.1 -5.3 phosphatase PAP2 family protein compare
ABID97_RS06895 -1.1 -7.7 cyanophycin synthetase compare
ABID97_RS17895 -1.1 -5.1 transcriptional regulator NrdR compare
ABID97_RS10720 -1.1 -3.2 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABID97_RS03640 -1.1 -3.4 SMP-30/gluconolactonase/LRE family protein compare
ABID97_RS06430 -1.1 -6.6 cytochrome c biogenesis protein CcsA compare
ABID97_RS08440 -1.1 -3.4 tRNA pseudouridine(38-40) synthase TruA compare
ABID97_RS15495 -1.1 -2.6 aliphatic sulfonate ABC transporter permease SsuC compare
ABID97_RS29455 -1.1 -2.2 ABC transporter substrate-binding protein compare
ABID97_RS04505 -1.1 -1.6 ferric iron uptake transcriptional regulator compare
ABID97_RS19720 -1.1 -2.3 shikimate dehydrogenase compare
ABID97_RS23185 -1.1 -1.1 ABC transporter ATP-binding protein compare
ABID97_RS16315 -1.1 -3.3 hypothetical protein compare
ABID97_RS12575 -1.1 -1.3 ATP-grasp domain-containing protein compare
ABID97_RS13195 -1.1 -1.8 maleylacetate reductase compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source L-Malic acid disodium salt monohydrate in Variovorax sp. OAS795

For carbon source L-Malic acid disodium salt monohydrate across organisms