Experiment set1IT076 for Lysobacter sp. OAE881

Compare to:

L-Malic acid disodium salt monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
ABIE51_RS05550 -4.4 -1.7 hypothetical protein compare
ABIE51_RS02575 -3.7 -1.4 HlyD family secretion protein compare
ABIE51_RS14070 -3.3 -5.0 glycosyltransferase family 9 protein compare
ABIE51_RS02585 -3.2 -2.0 SDR family oxidoreductase compare
ABIE51_RS17190 -3.0 -4.1 penicillin-binding protein 1A compare
ABIE51_RS06980 -2.9 -1.5 [protein-PII] uridylyltransferase compare
ABIE51_RS04390 -2.9 -7.7 glycoside hydrolase family 99-like domain-containing protein compare
ABIE51_RS05180 -2.9 -5.5 glycosyltransferase compare
ABIE51_RS10480 -2.8 -1.5 helix-turn-helix domain-containing protein compare
ABIE51_RS02280 -2.8 -4.2 CDP-glycerol glycerophosphotransferase family protein compare
ABIE51_RS08775 -2.6 -2.4 pseudouridine synthase compare
ABIE51_RS01045 -2.4 -2.4 hypothetical protein compare
ABIE51_RS04310 -2.4 -3.4 glycosyltransferase compare
ABIE51_RS14085 -2.3 -2.2 DUF6165 family protein compare
ABIE51_RS15885 -2.3 -5.4 DUF2066 domain-containing protein compare
ABIE51_RS10930 -2.2 -2.3 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABIE51_RS06800 -2.2 -1.2 ribosome biogenesis factor YjgA compare
ABIE51_RS09365 -2.2 -4.4 glycosyltransferase family 4 protein compare
ABIE51_RS05045 -2.2 -1.5 Holliday junction branch migration protein RuvA compare
ABIE51_RS06170 -2.1 -2.7 SPOR domain-containing protein compare
ABIE51_RS02300 -2.1 -3.7 lauroyl acyltransferase compare
ABIE51_RS06500 -2.1 -5.5 peptidoglycan DD-metalloendopeptidase family protein compare
ABIE51_RS13780 -2.1 -1.9 YigZ family protein compare
ABIE51_RS09235 -2.0 -1.1 hypothetical protein compare
ABIE51_RS02265 -2.0 -2.7 glycosyltransferase family 2 protein compare
ABIE51_RS15390 -2.0 -1.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE51_RS14555 -1.9 -1.8 M15 family metallopeptidase compare
ABIE51_RS07575 -1.9 -3.4 FKBP-type peptidyl-prolyl cis-trans isomerase N-terminal domain-containing protein compare
ABIE51_RS09065 -1.9 -7.6 UDP-glucose/GDP-mannose dehydrogenase family protein compare
ABIE51_RS17630 -1.9 -4.8 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase compare
ABIE51_RS03185 -1.7 -6.7 carboxy terminal-processing peptidase compare
ABIE51_RS07875 -1.7 -1.1 alpha/beta hydrolase compare
ABIE51_RS16260 -1.7 -2.0 hypothetical protein compare
ABIE51_RS13205 -1.7 -1.1 hydroxymethylglutaryl-CoA lyase compare
ABIE51_RS02785 -1.7 -1.1 DUF2946 family protein compare
ABIE51_RS15620 -1.6 -3.6 dTDP-glucose 4,6-dehydratase compare
ABIE51_RS17635 -1.6 -6.1 O-antigen ligase compare
ABIE51_RS11680 -1.6 -2.1 SsrA-binding protein SmpB compare
ABIE51_RS11675 -1.5 -4.6 type II toxin-antitoxin system RatA family toxin compare
ABIE51_RS11115 -1.5 -2.6 molybdate ABC transporter permease subunit compare
ABIE51_RS00105 -1.5 -2.9 SPOR domain-containing protein compare
ABIE51_RS03960 -1.5 -0.8 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA compare
ABIE51_RS13480 -1.5 -1.7 phytoene/squalene synthase family protein compare
ABIE51_RS03035 -1.5 -3.1 tyrosine recombinase XerC compare
ABIE51_RS00490 -1.5 -1.1 protein-export chaperone SecB compare
ABIE51_RS07770 -1.5 -2.1 RNA-binding S4 domain-containing protein compare
ABIE51_RS07305 -1.5 -2.3 hypothetical protein compare
ABIE51_RS01695 -1.4 -1.1 50S ribosomal protein L33 compare
ABIE51_RS10245 -1.4 -1.3 hypothetical protein compare
ABIE51_RS11655 -1.4 -2.4 DNA repair protein RecN compare
ABIE51_RS01645 -1.4 -1.2 MmcQ/YjbR family DNA-binding protein compare
ABIE51_RS04370 -1.3 -4.4 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABIE51_RS10620 -1.3 -1.3 response regulator transcription factor compare
ABIE51_RS02245 -1.3 -3.6 peptide deformylase compare
ABIE51_RS08695 -1.3 -3.1 DsbE family thiol:disulfide interchange protein compare
ABIE51_RS11625 -1.3 -3.5 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
ABIE51_RS14105 -1.3 -3.0 hydroxyacylglutathione hydrolase compare
ABIE51_RS06905 -1.3 -5.0 RIP metalloprotease RseP compare
ABIE51_RS06225 -1.3 -2.2 MarR family transcriptional regulator compare
ABIE51_RS05030 -1.3 -1.4 alpha/beta hydrolase compare
ABIE51_RS04245 -1.3 -2.6 fumarylacetoacetate hydrolase family protein compare
ABIE51_RS15400 -1.2 -2.2 Trm112 family protein compare
ABIE51_RS11855 -1.2 -1.4 hypothetical protein compare
ABIE51_RS09375 -1.2 -5.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABIE51_RS04705 -1.2 -1.6 division/cell wall cluster transcriptional repressor MraZ compare
ABIE51_RS00065 -1.2 -1.1 orotate phosphoribosyltransferase compare
ABIE51_RS02865 -1.2 -1.7 rhamnogalacturonan acetylesterase compare
ABIE51_RS16485 -1.2 -1.3 adenosylhomocysteinase compare
ABIE51_RS07450 -1.2 -1.4 glycosyltransferase compare
ABIE51_RS14165 -1.2 -1.5 tRNA-Leu compare
ABIE51_RS14395 -1.1 -1.9 PAS domain S-box protein compare
ABIE51_RS18715 -1.1 -0.9 DUF2784 domain-containing protein compare
ABIE51_RS01515 -1.1 -4.5 phospholipase D family protein compare
ABIE51_RS15785 -1.1 -2.0 FAD:protein FMN transferase compare
ABIE51_RS15240 -1.1 -1.4 integration host factor subunit alpha compare
ABIE51_RS12620 -1.1 -1.7 fumarate hydratase compare
ABIE51_RS10320 -1.1 -3.4 response regulator transcription factor compare
ABIE51_RS16995 -1.1 -2.6 cysteine synthase A compare
ABIE51_RS09430 -1.1 -2.7 tetratricopeptide repeat protein compare
ABIE51_RS15510 -1.1 -1.4 transporter associated domain-containing protein compare
ABIE51_RS19025 -1.1 -3.5 thiol:disulfide interchange protein DsbA/DsbL compare
ABIE51_RS10940 -1.1 -1.4 SDR family oxidoreductase compare
ABIE51_RS04805 -1.1 -1.4 A24 family peptidase compare
ABIE51_RS15415 -1.1 -1.9 DUF3301 domain-containing protein compare
ABIE51_RS09170 -1.1 -3.8 glutathione peroxidase compare
ABIE51_RS16760 -1.1 -3.5 RNA polymerase factor sigma-54 compare
ABIE51_RS00235 -1.1 -4.2 2-alkyl-3-oxoalkanoate reductase compare
ABIE51_RS12640 -1.1 -1.1 hypothetical protein compare
ABIE51_RS02110 -1.0 -2.6 DUF1203 domain-containing protein compare
ABIE51_RS06365 -1.0 -2.3 subclass B3 metallo-beta-lactamase compare
ABIE51_RS15755 -1.0 -1.6 non-heme iron oxygenase ferredoxin subunit compare
ABIE51_RS10040 -1.0 -2.4 Ohr family peroxiredoxin compare
ABIE51_RS01505 -1.0 -2.6 hypothetical protein compare
ABIE51_RS15000 -1.0 -3.1 Cache 3/Cache 2 fusion domain-containing protein compare
ABIE51_RS10225 -1.0 -1.7 NAD(P)H-hydrate dehydratase compare
ABIE51_RS17570 -1.0 -1.8 2-isopropylmalate synthase compare
ABIE51_RS09580 -0.9 -1.6 DUF892 family protein compare
ABIE51_RS13395 -0.9 -3.4 acetylglutamate kinase compare
ABIE51_RS02725 -0.9 -3.9 NAD(P)H-binding protein compare
ABIE51_RS00515 -0.9 -2.3 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABIE51_RS16880 -0.9 -1.4 chemotaxis protein CheA compare
ABIE51_RS09665 -0.9 -1.1 MFS transporter compare
ABIE51_RS17130 -0.9 -2.8 dicarboxylate/amino acid:cation symporter compare
ABIE51_RS02560 -0.9 -1.6 PAS domain-containing protein compare
ABIE51_RS02810 -0.9 -3.0 hypothetical protein compare
ABIE51_RS00695 -0.9 -2.2 ABC transporter permease compare
ABIE51_RS07910 -0.9 -1.2 polysaccharide deacetylase family protein compare
ABIE51_RS03295 -0.9 -1.1 hypothetical protein compare
ABIE51_RS09370 -0.9 -5.4 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABIE51_RS18555 -0.9 -1.3 cysteine hydrolase family protein compare
ABIE51_RS13540 -0.9 -3.8 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
ABIE51_RS05540 -0.9 -1.3 hypothetical protein compare
ABIE51_RS02515 -0.9 -1.7 DUF2878 domain-containing protein compare
ABIE51_RS10270 -0.9 -3.1 TIGR03885 family FMN-dependent LLM class oxidoreductase compare
ABIE51_RS06550 -0.9 -3.9 FtsH protease activity modulator HflK compare
ABIE51_RS11455 -0.9 -1.5 DNA translocase FtsK compare
ABIE51_RS16090 -0.9 -0.9 kinase compare
ABIE51_RS10830 -0.9 -1.0 MBL fold metallo-hydrolase compare
ABIE51_RS02855 -0.9 -1.1 2-keto-4-pentenoate hydratase compare
ABIE51_RS11665 -0.9 -3.5 outer membrane protein assembly factor BamE compare
ABIE51_RS14150 -0.9 -3.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABIE51_RS07990 -0.8 -2.4 glycine cleavage system protein R compare
ABIE51_RS03820 -0.8 -3.1 heavy metal translocating P-type ATPase compare
ABIE51_RS08835 -0.8 -2.6 GAF domain-containing protein compare
ABIE51_RS04690 -0.8 -1.6 penicillin-binding protein activator compare
ABIE51_RS18820 -0.8 -1.5 NADP-dependent malic enzyme compare
ABIE51_RS11055 -0.8 -1.3 CDF family Co(II)/Ni(II) efflux transporter DmeF compare
ABIE51_RS13305 -0.8 -1.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE51_RS07390 -0.8 -0.9 glycosyl hydrolase compare
ABIE51_RS14915 -0.8 -2.3 general secretion pathway protein GspB compare
ABIE51_RS12990 -0.8 -1.6 hypothetical protein compare
ABIE51_RS15215 -0.8 -1.9 DUF1801 domain-containing protein compare
ABIE51_RS06535 -0.8 -1.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABIE51_RS10785 -0.8 -1.9 cytochrome c oxidase subunit II compare
ABIE51_RS04550 -0.8 -2.5 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABIE51_RS17105 -0.8 -4.1 S1/P1 nuclease compare
ABIE51_RS10165 -0.8 -1.6 SapC family protein compare
ABIE51_RS02920 -0.8 -1.6 hypothetical protein compare
ABIE51_RS15815 -0.8 -2.6 sulfate adenylyltransferase subunit CysN compare
ABIE51_RS04210 -0.8 -5.0 cAMP-activated global transcriptional regulator CRP compare
ABIE51_RS11670 -0.8 -2.1 RnfH family protein compare
ABIE51_RS06480 -0.8 -0.7 Smr/MutS family protein compare
ABIE51_RS08590 -0.8 -3.3 hypothetical protein compare
ABIE51_RS11110 -0.8 -2.9 molybdate ABC transporter substrate-binding protein compare
ABIE51_RS02845 -0.8 -2.4 TRAP transporter small permease compare
ABIE51_RS03940 -0.8 -2.8 response regulator transcription factor compare
ABIE51_RS16240 -0.8 -1.7 CBS domain-containing protein compare
ABIE51_RS06105 -0.8 -4.3 OmpA family protein compare
ABIE51_RS16215 -0.8 -0.6 DUF1294 domain-containing protein compare
ABIE51_RS03845 -0.8 -0.7 cbb3-type cytochrome c oxidase subunit 3 compare
ABIE51_RS02525 -0.8 -2.8 DUF1365 domain-containing protein compare
ABIE51_RS11525 -0.8 -1.9 type II toxin-antitoxin system VapC family toxin compare
ABIE51_RS00250 -0.8 -1.7 olefin beta-lactone synthetase compare
ABIE51_RS06250 -0.8 -3.3 imidazolonepropionase compare
ABIE51_RS16420 -0.8 -1.7 TMEM165/GDT1 family protein compare
ABIE51_RS00845 -0.7 -3.6 response regulator compare
ABIE51_RS05105 -0.7 -2.0 7-cyano-7-deazaguanine synthase QueC compare
ABIE51_RS18195 -0.7 -0.9 Hsp20/alpha crystallin family protein compare
ABIE51_RS05745 -0.7 -3.2 redox-regulated ATPase YchF compare
ABIE51_RS08685 -0.7 -2.8 tetratricopeptide repeat protein compare
ABIE51_RS01215 -0.7 -1.3 sialidase family protein compare
ABIE51_RS10835 -0.7 -2.7 hypothetical protein compare
ABIE51_RS09390 -0.7 -1.8 glycine zipper 2TM domain-containing protein compare
ABIE51_RS05035 -0.7 -0.6 YebC/PmpR family DNA-binding transcriptional regulator compare
ABIE51_RS02580 -0.7 -2.1 MFS transporter compare
ABIE51_RS07320 -0.7 -1.3 packaged DNA stabilization gp4 family protein compare
ABIE51_RS18090 -0.7 -1.8 fimbria/pilus periplasmic chaperone compare
ABIE51_RS08705 -0.7 -2.8 cytochrome c maturation protein CcmE compare
ABIE51_RS13970 -0.7 -0.5 hypothetical protein compare
ABIE51_RS15615 -0.7 -3.7 glucose-1-phosphate thymidylyltransferase RfbA compare
ABIE51_RS06765 -0.7 -0.6 energy transducer TonB compare
ABIE51_RS09340 -0.7 -1.9 (d)CMP kinase compare
ABIE51_RS14195 -0.7 -0.8 Na+/H+ antiporter NhaC family protein compare
ABIE51_RS04560 -0.7 -2.6 PilN domain-containing protein compare
ABIE51_RS10625 -0.7 -1.8 alpha/beta hydrolase compare
ABIE51_RS01230 -0.7 -2.3 translocation/assembly module TamB domain-containing protein compare
ABIE51_RS18145 -0.7 -1.5 response regulator compare
ABIE51_RS00680 -0.7 -1.3 TatD family hydrolase compare
ABIE51_RS03550 -0.7 -2.0 HIT family protein compare
ABIE51_RS11685 -0.7 -4.4 CHASE domain-containing protein compare
ABIE51_RS12670 -0.7 -2.6 3-hydroxyanthranilate 3,4-dioxygenase compare
ABIE51_RS17270 -0.7 -0.9 DNA-directed RNA polymerase subunit omega compare
ABIE51_RS12425 -0.7 -4.1 nucleotide sugar dehydrogenase compare
ABIE51_RS14040 -0.7 -2.5 molybdenum cofactor biosynthesis protein MoaE compare
ABIE51_RS11975 -0.7 -0.6 response regulator compare
ABIE51_RS04545 -0.7 -1.5 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABIE51_RS01220 -0.7 -1.5 aldehyde-activating protein compare
ABIE51_RS15410 -0.7 -0.4 FHA domain-containing protein compare
ABIE51_RS04645 -0.7 -0.5 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
ABIE51_RS06340 -0.7 -2.9 hypothetical protein compare
ABIE51_RS12090 -0.7 -1.0 arsenic resistance N-acetyltransferase ArsN2 compare
ABIE51_RS06155 -0.7 -2.1 DUF3224 domain-containing protein compare
ABIE51_RS07815 -0.7 -1.8 carbon storage regulator CsrA compare
ABIE51_RS06090 -0.7 -2.6 LysR family transcriptional regulator compare
ABIE51_RS03275 -0.6 -0.7 hypothetical protein compare
ABIE51_RS08960 -0.6 -2.3 YhdH/YhfP family quinone oxidoreductase compare
ABIE51_RS13770 -0.6 -1.4 RNA polymerase sigma factor compare
ABIE51_RS02555 -0.6 -1.4 tryptophan-rich sensory protein compare
ABIE51_RS00535 -0.6 -1.3 UPF0149 family protein compare
ABIE51_RS12210 -0.6 -1.6 YdeI/OmpD-associated family protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source L-Malic acid disodium salt monohydrate in Lysobacter sp. OAE881

For carbon source L-Malic acid disodium salt monohydrate across organisms