Experiment set1IT074 for Agrobacterium fabrum C58

Compare to:

Protocatechuic Acid carbon source

200 most important genes:

  gene name fitness t score description  
Atu1687 -8.8 -6.1 anthranilate phosphoribosyltransferase compare
Atu4505 -8.0 -9.6 LacI family transcriptional regulator compare
Atu4549 -8.0 -9.5 beta-ketoadipyl CoA thiolase conserved
Atu2289 -7.8 -14.1 anthranilate synthase component I and II compare
Atu1750 -7.7 -4.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu3754 -7.6 -5.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2036 -7.6 -12.8 acetolactate synthase III, large subunit compare
Atu4538 -7.6 -15.3 3-carboxy-cis,cis-muconate cycloisomerase compare
Atu3740 -7.5 -7.3 fructose bisphosphate aldolase compare
Atu1844 -7.4 -5.1 Phosphoribosylformylglycinamidine synthetase compare
Atu2747 -7.3 -14.0 hypothetical protein compare
Atu4548 -7.3 -13.2 3-oxoadipate CoA-transferase subunit B conserved
Atu2791 -7.3 -8.6 3-isopropylmalate dehydrogenase compare
Atu3482 -7.2 -9.9 pantoate--beta-alanine ligase compare
Atu0038 -7.2 -7.0 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1688 -7.1 -4.9 indole-3-glycerol-phosphate synthase compare
Atu0099 -7.0 -11.8 prephenate dehydratase compare
Atu2709 -7.0 -18.1 3-isopropylmalate dehydratase, large subunit compare
Atu3483 -7.0 -8.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2264 -6.9 -13.4 2-isopropylmalate synthase compare
Atu1845 -6.9 -7.3 phosphoribosylformylglycinamidine synthase I compare
Atu3885 -6.9 -9.4 inositol monophosphatase compare
Atu1307 -6.9 -6.7 dihydroorotase compare
Atu0035 -6.9 -11.4 phosphoenolpyruvate carboxykinase compare
Atu4547 -6.8 -14.8 3-oxoadipate CoA-transferase subunit A compare
Atu3706 -6.8 -9.3 D-3-phosphoglycerate dehydrogenase compare
Atu1588 -6.8 -10.3 homoserine dehydrogenase compare
Atu0679 -6.7 -6.6 ATP phosphoribosyltransferase compare
Atu2040 -6.6 -7.9 phosphoserine phosphatase compare
Atu0298 -6.5 -4.5 orotidine 5 compare
Atu0537 -6.5 -6.3 histidinol dehydrogenase compare
Atu4541 -6.5 -7.7 carboxymuconolactone decarboxylase compare
Atu1075 -6.4 -7.6 amidophosphoribosyltransferase compare
Atu1850 -6.3 -7.4 phosphoribosylformylglycinamidine synthetase II compare
Atu3755 -6.2 -6.1 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2718 -6.1 -9.4 homoserine O-succinyltransferase compare
Atu0432 -6.1 -10.2 O-succinylhomoserine sulfhydrylase compare
Atu3739 -6.0 -3.0 phosphoglycerate kinase compare
Atu0017 -5.9 -4.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3707 -5.9 -5.7 phosphoserine aminotransferase compare
Atu1141 -5.9 -9.8 Phosphoribosylglycinamide synthetase compare
Atu0400 -5.8 -5.6 orotate phosphoribosyltransferase compare
Atu0030 -5.8 -2.1 phosphocarrier protein HPr compare
Atu1140 -5.8 -4.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1308 -5.7 -6.9 aspartate carbamoyl transferase catalytic subunit compare
Atu0678 -5.7 -8.7 histidyl-tRNA synthetase compare
Atu1205 -5.7 -16.0 threonine dehydratase compare
Atu0043 -5.6 -3.9 imidazoleglycerol-phosphate dehydratase compare
Atu3469 -5.6 -3.9 phosphoglyceromutase compare
Atu0399 -5.5 -6.5 dihydroorotase compare
Atu0039 -5.4 -3.7 imidazoleglycerol-phosphate synthase cyclase compare
Atu3731 -5.4 -11.0 5-formyltetrahydrofolate cyclo-ligase compare
Atu0486 -5.3 -6.5 dihydroorotate dehydrogenase compare
Atu4542 -5.2 -15.7 beta-ketoadipate enol-lactone hydrolase conserved
Atu2790 -5.2 -2.6 3-isopropylmalate dehydratase, small subunit compare
Atu0647 -5.2 -7.1 phosphoribosylamine--glycine ligase compare
Atu2015 -4.9 -15.9 aminotransferase compare
Atu2115 -4.8 -16.7 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu0041 -4.8 -3.3 glutamine amidotransferase compare
Atu0723 -4.7 -3.2 FAD dependent oxidoreductase compare
Atu0536 -4.7 -9.5 hypothetical protein compare
Atu1686 -4.6 -19.1 peptidyl-prolyl cis-trans isomerse D compare
Atu2650 -4.4 -14.2 glycerol-3-phosphate dehydrogenase compare
Atu1589 -4.3 -10.0 aminotransferase, class I compare
Atu2548 -4.3 -19.3 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu4539 -4.1 -15.7 protocatechuate 3,4-dioxygenase alpha chain conserved
Atu1030 -4.0 -3.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4096 -4.0 -10.0 nicotinate-nucleotide pyrophosphorylase compare
Atu0602 -3.9 -16.1 glutamine synthetase compare
Atu1456 -3.8 -13.0 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0040 -3.7 -1.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4098 -3.7 -18.4 quinolinate synthetase compare
Atu1464 -3.7 -10.4 glycine cleavage system T protein, aminomethyltransferase compare
Atu1463 -3.6 -8.3 glycine cleavage system component H compare
Atu0601 -3.6 -12.6 oxidoreductase compare
Atu1462 -3.5 -18.1 glycine cleavage system protein P2 compare
Atu4543 -3.5 -9.5 LysR family transcriptional regulator compare
Atu3783 -3.4 -19.4 glutamate synthase subunit beta compare
Atu0421 -3.4 -2.5 ABC transporter, membrane spanning protein compare
Atu0422 -3.4 -3.5 ABC transporter, membrane spanning protein compare
Atu4540 -3.3 -4.7 protocatechuate 3,4-dioxygenase subunit beta compare
Atu2125 -3.3 -3.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu4519 -3.3 -13.5 branched amino acid ABC transporter substrate-binding protein conserved
Atu1620 -3.2 -13.1 triosephosphate isomerase compare
Atu4517 -3.2 -14.3 branched chain amino acid ABC transporter permease conserved
Atu4515 -3.2 -12.4 branched chain amino acid ABC transporter ATPase conserved
Atu1454 -3.1 -9.2 siroheme synthase compare
Atu3784 -3.1 -23.9 glutamate synthase large subunit compare
Atu0803 -3.1 -18.2 pyruvate,orthophosphate dikinase compare
Atu1446 -3.0 -4.7 two component response regulator compare
Atu0999 -3.0 -11.1 magnesium transport protein compare
Atu4097 -2.9 -13.2 L-aspartate oxidase compare
Atu6114 -2.9 -3.5 hypothetical protein compare
Atu0659 -2.9 -7.7 NTP pyrophosphohydrolase, MutT family compare
Atu4516 -2.9 -8.8 branched chain amino acid ABC transporter ATPase compare
Atu1748 -2.8 -15.4 NIFU-like protein compare
Atu4518 -2.8 -6.9 branched chain amino acid ABC transporter permease conserved
Atu1685 -2.7 -2.0 hypothetical protein compare
Atu3997 -2.4 -14.9 biotin synthetase compare
Atu3290 -2.4 -11.1 phosphomethylpyrimidine kinase compare
Atu2155 -2.3 -15.8 methionine synthase compare
Atu1455 -2.2 -5.0 hypothetical protein compare
Atu2020 -2.2 -3.8 transcriptional regulator, TetR family compare
Atu2569 -2.2 -12.6 thiamine biosynthesis protein compare
Atu0434 -2.1 -4.0 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2832 -2.0 -5.2 tRNA modification GTPase compare
Atu2554 -1.9 -4.1 lysyl-tRNA synthetase compare
Atu1021 -1.9 -3.8 outer membrane protein compare
Atu0322 -1.9 -5.7 enoyl CoA hydratase compare
Atu2045 -1.9 -7.8 HFLK protein compare
Atu3289 -1.8 -7.1 thiamine-phosphate pyrophosphorylase compare
Atu1457 -1.8 -1.7 hypothetical protein compare
Atu4173 -1.8 -4.1 phosphoenolpyruvate-protein phosphotransferase compare
Atu3763 -1.8 -2.4 hypothetical protein compare
Atu3288 -1.7 -6.7 hydroxyethylthiazole kinase compare
Atu0388 -1.7 -10.8 two component sensor kinase compare
Atu0769 -1.7 -2.1 protoheme IX farnesyltransferase compare
Atu2640 -1.7 -5.8 hypothetical protein compare
Atu1359 -1.6 -1.4 dnaK deletion suppressor protein compare
Atu2205 -1.6 -5.4 transcriptional regulator, MarR family compare
Atu8115 -1.6 -3.0 Hypothetical Protein compare
Atu0876 -1.6 -2.8 superoxide dismutase compare
Atu2209 -1.6 -3.6 pyrroline-5-carboxylate reductase compare
Atu4546 -1.6 -5.5 IclR family transcriptional regulator conserved
Atu4711 -1.5 -6.8 two component sensor kinase compare
Atu0912 -1.5 -1.4 Na+/H+ antiporter compare
Atu0977 -1.5 -3.9 serine protease DO-like protease compare
Atu0641 -1.5 -3.5 hypothetical protein compare
Atu0368 -1.4 -5.9 tRNA pseudouridine synthase I compare
Atu4001 -1.4 -6.9 3-oxoacyl-ACP synthase compare
Atu1774 -1.4 -7.7 ABC transporter, substrate binding protein (peptide) compare
Atu0189 -1.4 -3.8 ABC transporter, membrane spanning protein (peptide) compare
Atu2044 -1.4 -4.8 HFLC protein compare
Atu3730 -1.4 -1.7 hypothetical protein compare
Atu0029 -1.3 -3.2 S-adenosylhomocysteine hydrolase compare
Atu2831 -1.3 -6.1 glucose inhibited division protein A compare
Atu3998 -1.3 -7.6 8-amino-7-oxononanoate synthase compare
Atu6045 -1.3 -1.3 replication protein C compare
Atu4000 -1.3 -9.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu4317 -1.2 -2.5 TetR family transcriptional regulator compare
Atu1445 -1.2 -3.7 two component sensor kinase compare
Atu3613 -1.1 -5.6 hypothetical protein compare
Atu5513 -1.1 -1.6 cold shock protein compare
Atu0332 -1.1 -5.5 RNA polymerase sigma-54 factor compare
Atu0346 -1.1 -2.5 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0953 -1.1 -1.2 hypothetical protein compare
Atu2684 -1.1 -2.2 hypothetical protein compare
Atu3910 -1.1 -5.9 LamB/YcsF family protein compare
Atu3732 -1.1 -4.6 hemolysin compare
Atu3999 -1.0 -3.1 dithiobiotin synthetase compare
Atu6098 -1.0 -0.6 transcriptional regulator, HTH family compare
Atu2442 -1.0 -1.8 hypothetical protein compare
Atu0031 -0.9 -1.3 PTS system, IIA component compare
Atu4635 -0.9 -3.6 hypothetical protein compare
Atu4217 -0.9 -1.8 TetR family transcriptional regulator compare
Atu8131 -0.9 -6.2 pH adaption potassium efflux system protein compare
Atu2439 -0.9 -1.4 hypothetical protein compare
Atu5160 -0.8 -2.2 transcriptional regulator protein compare
Atu0767 -0.8 -3.8 cytochrome c oxidase subunit II compare
Atu1213 -0.8 -2.0 hypothetical protein compare
Atu0190 -0.8 -5.1 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3780 -0.8 -4.2 hypothetical protein compare
Atu1677 -0.8 -2.0 queuine tRNA-ribosyltransferase compare
Atu0086 -0.8 -1.0 ribosome-binding factor A compare
Atu0837 -0.8 -3.3 transcriptional regulator, MarR family compare
Atu4773 -0.8 -1.7 two component response regulator compare
Atu3121 -0.8 -1.3 cold shock protein compare
Atu2682 -0.8 -2.5 hypothetical protein compare
Atu1546 -0.8 -2.7 transcriptional regulator, MerR family compare
Atu1542 -0.8 -3.8 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu0477 -0.8 -1.5 hypothetical protein compare
Atu1369 -0.8 -1.7 HIT family protein compare
Atu4176 -0.8 -3.4 hypothetical protein compare
Atu0658 -0.7 -3.9 phosphate permease compare
Atu2057 -0.7 -2.1 DNA helicase II compare
Atu1891 -0.7 -2.5 cobalamin biosynthesis protein compare
Atu2083 -0.7 -1.8 DNA repair protein RecN compare
Atu1447 -0.7 -1.8 two component sensor kinase compare
Atu3727 -0.7 -2.3 hypothetical protein compare
Atu2662 -0.7 -1.2 acetyltransferase compare
Atu1056 -0.7 -3.3 hypothetical protein compare
Atu0280 -0.7 -1.5 hypothetical protein compare
Atu0375 -0.7 -1.6 small heat shock protein compare
Atu1874 -0.7 -2.5 RecA protein compare
Atu2798 -0.7 -2.2 precorrin-6y methyltransferase compare
Atu5475 -0.7 -1.5 hypothetical protein compare
Atu0124 -0.7 -3.2 hypothetical protein compare
Atu2207 -0.7 -1.7 two component sensor kinase compare
Atu2245 -0.7 -5.0 Na+/Pi-cotransporter compare
Atu3697 -0.6 -3.1 ATP-dependent protease LA 2 compare
Atu0510 -0.6 -4.3 pH adaption potassium efflux system protein compare
Atu0922 -0.6 -1.0 hypothetical protein compare
Atu0498 -0.6 -3.3 hypothetical protein compare
Atu0843 -0.6 -4.9 P type cation (metal) transporter, ATPase component compare
Atu6173 -0.6 -2.0 component of type IV secretion system compare
Atu3486 -0.6 -1.1 DeoR family transcriptional regulator compare
Atu3517 -0.6 -2.9 acetyltransferase compare
Atu2495 -0.6 -2.7 flavoprotein oxidoreductase compare
Atu3886 -0.6 -3.7 lysophospholipase compare
Atu2491 -0.6 -1.5 hypothetical protein compare


Specific Phenotypes

For 14 genes in this experiment

For carbon source Protocatechuic Acid in Agrobacterium fabrum C58

For carbon source Protocatechuic Acid across organisms