Experiment set1IT071 for Methanococcus maripaludis S2

Compare to:

Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse2; 5 generations

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS06325 +1.0 5.5 hypothetical protein compare
MMP_RS00450 +0.9 1.4 4Fe-4S binding protein compare
MMP_RS06975 +0.9 4.0 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS00735 +0.8 4.6 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS05835 +0.8 1.4 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMP_RS06395 +0.8 2.9 ThiF family adenylyltransferase compare
MMP_RS00395 +0.8 2.3 MGMT family protein compare
MMP_RS03340 +0.7 1.0 ABC transporter ATP-binding protein compare
MMP_RS03450 +0.7 2.1 glycine synthesis protein GlyXS (from data) compare
MMP_RS00655 +0.7 2.7 hypothetical protein compare
MMP_RS01570 +0.7 2.1 hypothetical protein compare
MMP_RS00725 +0.7 2.7 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS05355 +0.6 1.0 hypothetical protein compare
MMP_RS07125 +0.6 1.8 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS00730 +0.6 2.2 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS02675 +0.6 2.4 hypothetical protein compare
MMP_RS07695 +0.6 3.3 DUF3236 domain-containing protein compare
MMP_RS06725 +0.6 3.9 hypothetical protein compare
MMP_RS01675 +0.6 1.7 hypothetical protein compare
MMP_RS07345 +0.6 2.6 glycine synthesis protein GlyXL (from data) compare
MMP_RS07645 +0.5 2.0 aldehyde dehydrogenase family protein compare
MMP_RS06840 +0.5 0.7 DNA-directed RNA polymerase subunit N compare
MMP_RS01055 +0.5 2.0 hypothetical protein compare
MMP_RS06710 +0.5 3.0 selenium-binding protein compare
MMP_RS07765 +0.5 3.1 sodium:alanine symporter family protein compare
MMP_RS08930 +0.5 1.3 hypothetical protein compare
MMP_RS05975 +0.5 1.3 hypothetical protein compare
MMP_RS08415 +0.5 1.3 radical SAM protein compare
MMP_RS02680 +0.5 3.3 ABC transporter permease compare
MMP_RS02475 +0.5 1.3 hypothetical protein compare
MMP_RS00315 +0.4 2.8 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS07815 +0.4 1.0 DUF2120 domain-containing protein compare
MMP_RS01635 +0.4 2.5 thiamine pyrophosphate-dependent enzyme compare
MMP_RS06015 +0.4 3.3 flavodoxin family protein compare
MMP_RS00290 +0.4 2.6 hypothetical protein compare
MMP_RS02470 +0.4 1.0 helix-turn-helix transcriptional regulator compare
MMP_RS01775 +0.4 1.3 TIGR00297 family protein compare
MMP_RS06375 +0.4 2.0 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS01150 +0.4 2.8 aldo/keto reductase compare
MMP_RS01650 +0.4 0.6 sulfurtransferase TusA family protein compare
MMP_RS07680 +0.4 2.8 DUF366 family protein compare
MMP_RS06335 +0.4 1.7 HAD family hydrolase compare
MMP_RS08275 +0.4 2.8 hypothetical protein compare
MMP_RS07355 +0.4 0.6 transcription factor S compare
MMP_RS02045 +0.4 1.1 tRNA-Met compare
MMP_RS07890 +0.4 1.4 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS00080 +0.4 1.8 RecB-family nuclease compare
MMP_RS07835 +0.4 1.9 TldD/PmbA family protein compare
MMP_RS08325 +0.4 3.0 hypothetical protein compare
MMP_RS08310 +0.4 1.3 TMEM165/GDT1 family protein compare
MMP_RS06530 +0.4 2.1 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMP_RS02690 +0.4 2.1 FmdE family protein compare
MMP_RS00545 +0.4 2.5 XRE family transcriptional regulator compare
MMP_RS05140 +0.4 1.5 helix-turn-helix transcriptional regulator compare
MMP_RS01980 +0.4 3.2 trimeric intracellular cation channel family protein compare
MMP_RS01620 +0.4 1.7 hypothetical protein compare
MMP_RS03895 +0.4 1.3 hypothetical protein compare
MMP_RS00155 +0.4 2.2 heavy metal-binding domain-containing protein compare
MMP_RS08500 +0.4 2.2 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS03535 +0.4 0.9 helix-turn-helix transcriptional regulator compare
MMP_RS07700 +0.4 2.3 DUF1188 domain-containing protein compare
MMP_RS05490 +0.4 1.7 IMPACT family protein compare
MMP_RS02595 +0.4 0.8 putative zinc-binding protein compare
MMP_RS08095 +0.4 2.2 dethiobiotin synthase compare
MMP_RS01525 +0.4 1.2 nucleoside-diphosphate kinase compare
MMP_RS07130 +0.4 2.4 coenzyme F420 hydrogenase subunit gamma compare
MMP_RS02725 +0.3 2.8 molybdate ABC transporter permease subunit compare
MMP_RS08705 +0.3 2.6 sulfopyruvate decarboxylase subunit beta compare
MMP_RS05365 +0.3 0.9 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
MMP_RS05720 +0.3 0.9 signal recognition particle subunit SRP19/SEC65 family protein compare
MMP_RS08775 +0.3 1.6 methanogenesis marker 9 domain-containing protein compare
MMP_RS06540 +0.3 1.4 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS05455 +0.3 2.1 DUF167 domain-containing protein compare
MMP_RS08555 +0.3 1.6 hypothetical protein compare
MMP_RS06070 +0.3 2.6 iron ABC transporter substrate-binding protein compare
MMP_RS08760 +0.3 1.7 hypothetical protein compare
MMP_RS02815 +0.3 1.0 hypothetical protein compare
MMP_RS01260 +0.3 1.1 HDIG domain-containing protein compare
MMP_RS03420 +0.3 1.2 acetolactate synthase small subunit compare
MMP_RS04015 +0.3 0.9 hypothetical protein compare
MMP_RS07915 +0.3 1.5 DUF4870 domain-containing protein compare
MMP_RS07840 +0.3 1.5 ribonuclease III compare
MMP_RS08350 +0.3 0.5 hypothetical protein compare
MMP_RS00665 +0.3 1.2 hypothetical protein compare
MMP_RS02300 +0.3 1.7 NAD(P)H-dependent oxidoreductase compare
MMP_RS03910 +0.3 1.1 hypothetical protein compare
MMP_RS08265 +0.3 1.4 rubrerythrin compare
MMP_RS06910 +0.3 1.9 RlmF-related methyltransferase compare
MMP_RS00540 +0.3 1.9 PLP-dependent aminotransferase family protein compare
MMP_RS07900 +0.3 0.9 YeeE/YedE family protein compare
MMP_RS08685 +0.3 2.5 hypothetical protein compare
MMP_RS03235 +0.3 1.9 tRNA pseudouridine(13) synthase TruD compare
MMP_RS00705 +0.3 1.0 hypothetical protein compare
MMP_RS07435 +0.3 0.5 GMP synthase subunit A compare
MMP_RS01865 +0.3 0.8 GPR1/FUN34/YaaH family transporter compare
MMP_RS06430 +0.3 1.9 6-carboxytetrahydropterin synthase QueD compare
MMP_RS00945 +0.3 0.7 PadR family transcriptional regulator compare
MMP_RS00385 +0.3 1.3 P-II family nitrogen regulator compare
MMP_RS07925 +0.3 1.3 haloacid dehalogenase compare
MMP_RS09065 +0.3 2.4 hypothetical protein compare
MMP_RS03840 +0.3 1.6 hypothetical protein compare
MMP_RS03830 +0.3 2.0 exodeoxyribonuclease VII large subunit compare
MMP_RS06545 +0.3 1.3 ferredoxin family protein compare
MMP_RS08850 +0.3 2.4 hypothetical protein compare
MMP_RS04850 +0.3 2.3 UPF0254 family protein compare
MMP_RS03870 +0.3 1.6 purine NTPase compare
MMP_RS03280 +0.3 2.0 pyridoxamine 5'-phosphate oxidase family protein compare
MMP_RS08315 +0.3 1.3 S-methyl-5-thioribose-1-phosphate isomerase compare
MMP_RS00960 +0.3 1.2 iron export ABC transporter permease subunit FetB compare
MMP_RS05955 +0.3 0.8 CoB--CoM heterodisulfide reductase subunit C compare
MMP_RS00855 +0.3 1.3 DUF367 family protein compare
MMP_RS08260 +0.3 2.1 DUF99 family protein compare
MMP_RS00035 +0.3 1.9 DUF2098 family protein compare
MMP_RS01320 +0.3 1.3 hypothetical protein compare
MMP_RS01455 +0.3 1.9 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS07155 +0.3 1.8 MFS transporter compare
MMP_RS05970 +0.3 1.2 class II SORL domain-containing protein compare
MMP_RS00435 +0.3 1.9 CPBP family intramembrane metalloprotease compare
MMP_RS05985 +0.3 0.7 hypothetical protein compare
MMP_RS08480 +0.3 1.9 molybdate ABC transporter substrate-binding protein compare
MMP_RS03215 +0.3 1.8 MBL fold metallo-hydrolase compare
MMP_RS07985 +0.3 2.1 nitroreductase family protein compare
MMP_RS07590 +0.3 1.9 hypothetical protein compare
MMP_RS04530 +0.2 1.8 ABC transporter permease compare
MMP_RS08700 +0.2 1.7 hypothetical protein compare
MMP_RS00650 +0.2 1.8 ABC transporter ATP-binding protein compare
MMP_RS01120 +0.2 1.3 permease compare
MMP_RS01420 +0.2 0.6 hypothetical protein compare
MMP_RS05360 +0.2 1.0 hypothetical protein compare
MMP_RS08130 +0.2 2.1 IGHMBP2 family helicase compare
MMP_RS05680 +0.2 1.9 phosphate signaling complex protein PhoU compare
MMP_RS01785 +0.2 1.3 hypothetical protein compare
MMP_RS04205 +0.2 1.2 carboxymuconolactone decarboxylase family protein compare
MMP_RS00390 +0.2 2.0 ammonium transporter compare
MMP_RS00660 +0.2 2.0 alkaline phosphatase family protein compare
MMP_RS00040 +0.2 1.4 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS02415 +0.2 0.8 site-specific integrase compare
MMP_RS06190 +0.2 1.5 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO compare
MMP_RS02490 +0.2 1.1 hypothetical protein compare
MMP_RS01700 +0.2 0.3 dihydroxy-acid dehydratase compare
MMP_RS01655 +0.2 0.9 DsrE family protein compare
MMP_RS01485 +0.2 1.8 right-handed parallel beta-helix repeat-containing protein compare
MMP_RS07805 +0.2 1.4 ABC transporter permease compare
MMP_RS01630 +0.2 1.5 N-glycosylase/DNA lyase compare
MMP_RS02085 +0.2 1.7 inosine/xanthosine triphosphatase compare
MMP_RS00285 +0.2 1.4 TIGR04013 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS07085 +0.2 1.5 ribonuclease HII compare
MMP_RS02650 +0.2 1.5 flavodoxin family protein compare
MMP_RS05415 +0.2 1.4 DUF22 domain-containing protein compare
MMP_RS08675 +0.2 1.1 class III signal peptide-containing protein compare
MMP_RS00185 +0.2 2.0 potassium channel protein compare
MMP_RS02825 +0.2 1.8 mechanosensitive ion channel family protein compare
MMP_RS04100 +0.2 1.1 hypothetical protein compare
MMP_RS00640 +0.2 1.5 ABC transporter substrate-binding protein compare
MMP_RS09030 +0.2 1.1 hypothetical protein compare
MMP_RS04310 +0.2 0.8 hypothetical protein compare
MMP_RS08285 +0.2 1.5 serine/threonine protein kinase compare
MMP_RS08105 +0.2 1.6 6-carboxyhexanoate--CoA ligase compare
MMP_RS06150 +0.2 1.6 hypothetical protein compare
MMP_RS06080 +0.2 1.8 radical SAM protein compare
MMP_RS01430 +0.2 1.4 mechanosensitive ion channel family protein compare
MMP_RS01095 +0.2 1.2 iron ABC transporter permease compare
MMP_RS07120 +0.2 1.4 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS00990 +0.2 0.6 hypothetical protein compare
MMP_RS02705 +0.2 1.3 formylmethanofuran dehydrogenase subunit B compare
MMP_RS08750 +0.2 1.0 hypothetical protein compare
MMP_RS03780 +0.2 1.5 4Fe-4S binding protein compare
MMP_RS03875 +0.2 0.8 hypothetical protein compare
MMP_RS08640 +0.2 1.6 TIM barrel protein compare
MMP_RS02320 +0.2 1.4 glutamate-cysteine ligase family protein compare
MMP_RS03065 +0.2 0.5 AzlC family ABC transporter permease compare
MMP_RS05715 +0.2 1.5 hypothetical protein compare
MMP_RS06735 +0.2 1.3 class I SAM-dependent rRNA methyltransferase compare
MMP_RS09025 +0.2 0.4 hypothetical protein compare
MMP_RS02550 +0.2 1.2 helix-turn-helix transcriptional regulator compare
MMP_RS03965 +0.2 0.8 hypothetical protein compare
MMP_RS05275 +0.2 1.6 AI-2E family transporter compare
MMP_RS05510 +0.2 1.2 Rrf2 family transcriptional regulator compare
MMP_RS02960 +0.2 1.6 class I SAM-dependent methyltransferase family protein compare
MMP_RS05235 +0.2 1.6 exodeoxyribonuclease III compare
MMP_RS08580 +0.2 0.8 flagellin compare
MMP_RS06590 +0.2 0.9 GNAT family N-acetyltransferase compare
MMP_RS03150 +0.2 1.6 phosphoglycerate mutase compare
MMP_RS05675 +0.2 0.9 phosphate ABC transporter ATP-binding protein PstB compare
MMP_RS00280 +0.2 1.5 DUF2118 domain-containing protein compare
MMP_RS01145 +0.2 1.4 ABC transporter ATP-binding protein compare
MMP_RS03740 +0.2 1.3 indolepyruvate oxidoreductase subunit beta compare
MMP_RS03275 +0.2 1.0 TIGR00266 family protein compare
MMP_RS06965 +0.2 1.3 TIGR04014 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS07595 +0.2 1.5 hypothetical protein compare
MMP_RS01125 +0.2 1.0 thioredoxin family protein compare
MMP_RS04610 +0.2 1.0 Dabb family protein compare
MMP_RS01685 +0.2 0.9 indolepyruvate oxidoreductase subunit beta compare
MMP_RS01690 +0.2 1.3 indolepyruvate ferredoxin oxidoreductase subunit alpha compare
MMP_RS06745 +0.2 0.6 DUF2119 domain-containing protein compare
MMP_RS08085 +0.2 1.3 hypothetical protein compare
MMP_RS04060 +0.2 0.9 hypothetical protein compare
MMP_RS00345 +0.2 1.4 DUF2666 domain-containing protein compare
MMP_RS08380 +0.2 1.3 phosphatase PAP2 family protein compare
MMP_RS01115 +0.2 1.4 molybdopterin molybdotransferase MoeA compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in mixed community experiments

For mixed community Ethanolamine across organisms