Experiment set1IT070 for Rahnella sp. WP5

Compare to:

Ammonium chloride nitrogen source; ShewMM media; shaking

200 most important genes:

  gene name fitness t score description  
EX31_RS02530 -5.9 -4.1 ABC transporter ATP-binding protein compare
EX31_RS12400 -5.8 -4.0 RNA polymerase factor sigma-54 compare
EX31_RS15020 -5.7 -17.5 ketol-acid reductoisomerase compare
EX31_RS03830 -5.6 -14.0 carbamoyl-phosphate synthase large subunit compare
EX31_RS22625 -5.6 -3.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS03690 -5.5 -8.4 3-isopropylmalate dehydratase large subunit compare
EX31_RS03695 -5.5 -6.5 3-isopropylmalate dehydratase small subunit compare
EX31_RS04035 -5.4 -13.0 phosphoserine phosphatase compare
EX31_RS13445 -5.4 -14.7 argininosuccinate synthase compare
EX31_RS12515 -5.3 -26.1 glutamate synthase large subunit compare
EX31_RS14180 -5.3 -15.0 argininosuccinate lyase compare
EX31_RS02520 -5.3 -3.7 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS03935 -5.3 -10.7 threonine synthase compare
EX31_RS03685 -5.3 -14.1 3-isopropylmalate dehydrogenase compare
EX31_RS22695 -5.3 -8.0 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS12510 -5.1 -18.7 FAD-dependent oxidoreductase compare
EX31_RS03940 -5.1 -12.4 homoserine kinase compare
EX31_RS15005 -5.0 -18.1 dihydroxy-acid dehydratase compare
EX31_RS03945 -5.0 -23.6 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS20980 -5.0 -7.6 glutamate 5-kinase compare
EX31_RS14185 -5.0 -9.0 acetylglutamate kinase compare
EX31_RS09855 -5.0 -3.4 orotidine-5'-phosphate decarboxylase compare
EX31_RS14190 -5.0 -13.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS23245 -4.9 -17.7 asparagine synthase B compare
EX31_RS02690 -4.9 -5.8 pyrroline-5-carboxylate reductase compare
EX31_RS11460 -4.9 -3.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS14200 -4.9 -18.2 phosphoenolpyruvate carboxylase compare
EX31_RS21470 -4.9 -9.9 phosphoglycerate dehydrogenase compare
EX31_RS11470 -4.9 -3.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS11440 -4.8 -4.7 histidinol dehydrogenase compare
EX31_RS13275 -4.7 -13.3 diaminopimelate decarboxylase compare
EX31_RS15880 -4.7 -10.5 nitrogen regulation protein NR(I) compare
EX31_RS16860 -4.7 -21.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS20495 -4.7 -10.4 outer membrane protein assembly factor BamB compare
EX31_RS05785 -4.7 -4.5 superoxide dismutase [Mn] compare
EX31_RS03835 -4.6 -10.3 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS09975 -4.6 -6.3 tryptophan synthase subunit beta compare
EX31_RS20975 -4.6 -8.7 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS11455 -4.5 -4.4 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS13160 -4.5 -14.4 amino-acid N-acetyltransferase compare
EX31_RS11735 -4.5 -10.4 homoserine O-succinyltransferase compare
EX31_RS14500 -4.5 -12.6 orotate phosphoribosyltransferase compare
EX31_RS09965 -4.5 -6.1 anthranilate phosphoribosyltransferase compare
EX31_RS19570 -4.5 -14.3 amidophosphoribosyltransferase compare
EX31_RS11465 -4.4 -6.1 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS16855 -4.4 -16.4 phosphoribosylamine--glycine ligase compare
EX31_RS24385 -4.4 -3.0 dihydroorotase compare
EX31_RS09980 -4.4 -6.0 tryptophan synthase subunit alpha compare
EX31_RS09970 -4.3 -7.2 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS21895 -4.3 -19.4 phosphoribosylformylglycinamidine synthase compare
EX31_RS12825 -4.3 -10.6 ornithine carbamoyltransferase compare
EX31_RS18530 -4.2 -15.2 leucine-responsive transcriptional regulator Lrp compare
EX31_RS08745 -4.2 -2.9 50S ribosomal protein L9 compare
EX31_RS07585 -4.2 -10.2 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS12785 -4.2 -14.6 aspartate carbamoyltransferase compare
EX31_RS18540 -4.2 -2.9 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS02515 -4.2 -6.9 PAS domain-containing protein compare
EX31_RS20175 -4.1 -10.7 cysteine synthase A compare
EX31_RS07870 -4.1 -10.7 adenylyl-sulfate kinase compare
EX31_RS23415 -4.1 -9.2 citrate synthase compare
EX31_RS22620 -4.1 -6.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS22245 -4.1 -2.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS14215 -4.0 -21.0 cystathionine gamma-synthase compare
EX31_RS03680 -4.0 -15.5 2-isopropylmalate synthase compare
EX31_RS22750 -4.0 -6.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS09955 -4.0 -7.2 anthranilate synthase component 1 compare
EX31_RS11445 -4.0 -8.5 histidinol-phosphate transaminase compare
EX31_RS20450 -4.0 -7.1 IMP dehydrogenase compare
EX31_RS03250 -3.9 -10.9 RNA polymerase-binding protein DksA compare
EX31_RS18095 -3.8 -6.3 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS22250 -3.7 -6.1 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS09960 -3.6 -6.0 glutamine amidotransferase compare
EX31_RS11450 -3.6 -6.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS23440 -3.6 -2.5 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS14310 -3.4 -4.6 6-phosphofructokinase compare
EX31_RS07900 -3.4 -17.6 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS09890 -3.3 -12.9 HTH-type transcriptional regulator CysB compare
EX31_RS02385 -3.3 -2.3 hypothetical protein compare
EX31_RS07590 -3.3 -2.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS15870 -3.3 -3.9 glutamate--ammonia ligase compare
EX31_RS18570 -3.2 -2.7 cold shock-like protein CspD compare
EX31_RS07895 -3.1 -11.1 phosphoadenylyl-sulfate reductase compare
EX31_RS07905 -3.1 -16.0 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS15875 -3.0 -12.6 nitrogen regulation protein NR(II) compare
EX31_RS14335 -3.0 -2.0 serine O-acetyltransferase compare
EX31_RS18255 -3.0 -3.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS16655 -2.9 -2.7 hypothetical protein compare
EX31_RS08720 -2.9 -14.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS07955 -2.8 -16.1 GTP diphosphokinase compare
EX31_RS11435 -2.6 -7.1 ATP phosphoribosyltransferase compare
EX31_RS03790 -2.6 -3.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS04630 -2.6 -12.9 aspartate aminotransferase family protein compare
EX31_RS07880 -2.5 -14.5 sulfate adenylyltransferase subunit CysD compare
EX31_RS14205 -2.5 -10.1 methylenetetrahydrofolate reductase compare
EX31_RS20735 -2.5 -5.5 exodeoxyribonuclease V subunit beta compare
EX31_RS06055 -2.4 -4.3 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS07875 -2.4 -15.3 sulfate adenylyltransferase subunit CysN compare
EX31_RS18525 -2.4 -4.5 DNA translocase FtsK compare
EX31_RS12875 -2.3 -2.7 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS08535 -2.3 -2.9 30S ribosome-binding factor RbfA compare
EX31_RS21850 -2.3 -3.0 pyridoxine 5'-phosphate synthase compare
EX31_RS08130 -2.2 -2.3 accessory factor UbiK family protein compare
EX31_RS06150 -2.2 -13.7 transcriptional regulator AsnC compare
EX31_RS25365 -2.2 -2.0 50S ribosomal protein L31 compare
EX31_RS02365 -2.2 -2.0 hypothetical protein compare
EX31_RS07595 -2.1 -7.6 3-deoxy-7-phosphoheptulonate synthase compare
EX31_RS06595 -2.1 -2.2 electron transport complex subunit E compare
EX31_RS03480 -2.0 -4.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS07560 -2.0 -14.4 ATP-dependent chaperone ClpB compare
EX31_RS09580 -2.0 -1.9 flagellar motor switch protein FliN compare
EX31_RS25370 -2.0 -9.3 HTH-type transcriptional regulator MetR compare
EX31_RS06065 -1.9 -7.7 phosphate ABC transporter permease PstC compare
EX31_RS15010 -1.9 -8.5 threonine ammonia-lyase, biosynthetic compare
EX31_RS03775 -1.8 -4.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS01710 -1.8 -1.4 hypothetical protein compare
EX31_RS10115 -1.8 -8.8 formyltetrahydrofolate deformylase compare
EX31_RS06070 -1.8 -7.1 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS17285 -1.8 -4.1 carboxy-S-adenosyl-L-methionine synthase CmoA compare
EX31_RS11815 -1.7 -7.6 glucose-6-phosphate isomerase compare
EX31_RS19655 -1.7 -5.3 beta-ketoacyl-ACP synthase I compare
EX31_RS06060 -1.7 -3.9 phosphate ABC transporter permease PstA compare
EX31_RS15540 -1.6 -1.8 SDR family oxidoreductase compare
EX31_RS09895 -1.5 -3.0 type I DNA topoisomerase compare
EX31_RS02920 -1.5 -2.2 glycosyltransferase compare
EX31_RS19610 -1.5 -6.6 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS15155 -1.4 -2.5 diaminopimelate epimerase compare
EX31_RS14340 -1.4 -1.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS10035 -1.4 -1.3 cardiolipin synthase compare
EX31_RS07785 -1.4 -1.4 carbon storage regulator CsrA compare
EX31_RS03890 -1.4 -3.7 Na+/H+ antiporter NhaA compare
EX31_RS01970 -1.4 -1.4 hypothetical protein compare
EX31_RS24375 -1.4 -2.8 biofilm formation regulator BssS compare
EX31_RS04390 -1.4 -3.1 DNA polymerase III subunit chi compare
EX31_RS07185 -1.3 -4.4 mannosyl-3-phosphoglycerate phosphatase-related protein compare
EX31_RS19600 -1.3 -5.8 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS11130 -1.3 -3.5 ABC transporter permease compare
EX31_RS21400 -1.3 -4.6 transketolase compare
EX31_RS09175 -1.3 -3.5 ATP-binding cassette domain-containing protein compare
EX31_RS07380 -1.2 -1.8 redox-regulated ATPase YchF compare
EX31_RS10245 -1.2 -2.9 D-alanyl-D-alanine dipeptidase compare
EX31_RS19480 -1.2 -5.7 acetate kinase compare
EX31_RS16625 -1.2 -1.0 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
EX31_RS09220 -1.2 -1.5 MurR/RpiR family transcriptional regulator compare
EX31_RS24420 -1.2 -5.6 phosphate acyltransferase PlsX compare
EX31_RS15000 -1.2 -7.2 branched-chain amino acid transaminase compare
EX31_RS03400 -1.2 -4.7 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS11110 -1.2 -1.6 RidA family protein compare
EX31_RS06000 -1.2 -3.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS23480 -1.2 -3.1 Tol-Pal system protein TolQ compare
EX31_RS22690 -1.2 -6.1 phosphoribosylglycinamide formyltransferase compare
EX31_RS09080 -1.2 -0.9 LysR family transcriptional regulator compare
EX31_RS09655 -1.2 -1.5 membrane protein compare
EX31_RS19205 -1.2 -2.9 50S ribosomal protein L25 compare
EX31_RS16845 -1.2 -2.6 DNA-binding protein HU-alpha compare
EX31_RS10025 -1.2 -2.5 hypothetical protein compare
EX31_RS22740 -1.2 -5.6 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS23050 -1.1 -3.4 GNAT family N-acetyltransferase compare
EX31_RS19405 -1.1 -2.5 NADH-quinone oxidoreductase subunit NuoH compare
EX31_RS01225 -1.1 -2.3 glutaredoxin-dependent arsenate reductase compare
EX31_RS22430 -1.1 -1.3 hemolysin expression modulator Hha compare
EX31_RS23315 -1.1 -4.3 replication initiation negative regulator SeqA compare
EX31_RS06580 -1.1 -1.9 LysR family transcriptional regulator compare
EX31_RS23485 -1.1 -1.8 colicin uptake protein TolR compare
EX31_RS04925 -1.1 -2.0 Fe-S biogenesis protein NfuA compare
EX31_RS20180 -1.1 -1.3 phosphocarrier protein Hpr compare
EX31_RS11125 -1.1 -2.2 ABC transporter ATP-binding protein compare
EX31_RS24450 -1.1 -2.1 aminodeoxychorismate lyase compare
EX31_RS01445 -1.1 -1.5 J domain-containing protein compare
EX31_RS23895 -1.1 -4.2 TetR/AcrR family transcriptional regulator compare
EX31_RS11675 -1.1 -1.8 Holliday junction branch migration protein RuvA compare
EX31_RS14620 -1.1 -1.7 SCP2 domain-containing protein compare
EX31_RS23990 -1.1 -1.4 SDR family NAD(P)-dependent oxidoreductase compare
EX31_RS07750 -1.1 -7.1 glutamate--cysteine ligase compare
EX31_RS02140 -1.1 -3.0 DUF1852 domain-containing protein compare
EX31_RS09700 -1.1 -2.5 GlpM family protein compare
EX31_RS21020 -1.1 -1.5 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS11045 -1.1 -0.9 NADP-dependent oxidoreductase compare
EX31_RS11240 -1.1 -1.7 GNAT family N-acetyltransferase compare
EX31_RS13045 -1.1 -6.8 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS09095 -1.0 -2.2 GNAT family N-acetyltransferase compare
EX31_RS25965 -1.0 -3.5 hypothetical protein compare
EX31_RS15015 -1.0 -2.5 HTH-type transcriptional activator IlvY compare
EX31_RS25885 -1.0 -2.2 type VI secretion system baseplate subunit TssG compare
EX31_RS17835 -1.0 -1.4 PTS transporter subunit EIIB compare
EX31_RS09545 -1.0 -2.7 flagellar motor switch protein FliG compare
EX31_RS22800 -1.0 -2.0 ArsC family reductase compare
EX31_RS05145 -1.0 -5.3 inorganic phosphate transporter PitA compare
EX31_RS02130 -1.0 -2.5 amino acid-binding protein compare
EX31_RS05825 -1.0 -1.8 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS16555 -1.0 -1.2 PTS sugar transporter subunit IIB compare
EX31_RS25125 -1.0 -2.4 thr operon leader peptide compare
EX31_RS23885 -1.0 -1.9 DUF1471 domain-containing protein compare
EX31_RS06140 -1.0 -6.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS20895 -1.0 -2.4 hypothetical protein compare
EX31_RS07025 -1.0 -2.8 xanthine dehydrogenase small subunit compare
EX31_RS04725 -1.0 -3.0 shikimate kinase AroK compare
EX31_RS24050 -1.0 -2.7 ABC transporter permease compare
EX31_RS09755 -1.0 -3.1 xylose ABC transporter ATP-binding protein compare
EX31_RS03920 -1.0 -4.9 transaldolase compare
EX31_RS10750 -1.0 -1.4 chromate transporter compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms