Experiment set1IT068 for Methanococcus maripaludis S2

Compare to:

Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; 1,3-Propanediol_timecourse2; 20 generations

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS07695 +1.4 9.5 DUF3236 domain-containing protein compare
MMP_RS00730 +1.3 6.9 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS07700 +1.2 7.6 DUF1188 domain-containing protein compare
MMP_RS07345 +1.2 7.2 glycine synthesis protein GlyXL (from data) compare
MMP_RS06395 +1.2 4.2 ThiF family adenylyltransferase compare
MMP_RS00725 +1.2 6.2 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS08275 +1.2 9.2 hypothetical protein compare
MMP_RS06975 +1.1 6.5 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS08845 +1.1 8.7 archaellum operon transcriptional activator EarA family protein compare
MMP_RS08850 +1.1 9.8 hypothetical protein compare
MMP_RS08310 +1.0 3.6 TMEM165/GDT1 family protein compare
MMP_RS00735 +1.0 5.1 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS03450 +0.9 3.3 glycine synthesis protein GlyXS (from data) compare
MMP_RS01785 +0.9 4.4 hypothetical protein compare
MMP_RS08750 +0.8 3.7 hypothetical protein compare
MMP_RS02605 +0.8 1.3 MotA/TolQ/ExbB proton channel family protein compare
MMP_RS06725 +0.8 5.0 hypothetical protein compare
MMP_RS09025 +0.7 1.3 hypothetical protein compare
MMP_RS08675 +0.7 2.9 class III signal peptide-containing protein compare
MMP_RS07840 +0.7 2.9 ribonuclease III compare
MMP_RS08480 +0.7 5.6 molybdate ABC transporter substrate-binding protein compare
MMP_RS00655 +0.7 2.8 hypothetical protein compare
MMP_RS07650 +0.7 5.5 TldD/PmbA family protein compare
MMP_RS08670 +0.7 4.8 metallophosphoesterase compare
MMP_RS08930 +0.7 1.3 hypothetical protein compare
MMP_RS07765 +0.7 4.6 sodium:alanine symporter family protein compare
MMP_RS07915 +0.7 3.0 DUF4870 domain-containing protein compare
MMP_RS08665 +0.7 5.9 hypothetical protein compare
MMP_RS00295 +0.7 2.6 gamma carbonic anhydrase family protein compare
MMP_RS08980 +0.7 3.1 hypothetical protein compare
MMP_RS08390 +0.6 3.5 DUF5400 domain-containing protein compare
MMP_RS08640 +0.6 4.8 TIM barrel protein compare
MMP_RS08395 +0.6 2.6 DsrE family protein compare
MMP_RS08325 +0.6 4.8 hypothetical protein compare
MMP_RS08835 +0.6 3.0 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMP_RS07550 +0.6 4.8 L-serine ammonia-lyase iron-sulfur-dependent subunit alpha compare
MMP_RS06930 +0.6 4.6 MBL fold metallo-hydrolase compare
MMP_RS07560 +0.6 4.1 prefoldin subunit alpha compare
MMP_RS07835 +0.6 2.5 TldD/PmbA family protein compare
MMP_RS08615 +0.6 2.1 flagellar protein G compare
MMP_RS08700 +0.6 4.1 hypothetical protein compare
MMP_RS08235 +0.6 4.4 hypothetical protein compare
MMP_RS08775 +0.6 2.9 methanogenesis marker 9 domain-containing protein compare
MMP_RS09060 +0.6 4.5 hypothetical protein compare
MMP_RS00290 +0.6 3.6 hypothetical protein compare
MMP_RS08625 +0.6 3.7 type II/IV secretion system ATPase subunit compare
MMP_RS07775 +0.6 3.0 alanine dehydrogenase compare
MMP_RS08630 +0.6 3.1 archaellar assembly protein FlaJ compare
MMP_RS08160 +0.6 2.7 EamA family transporter compare
MMP_RS09065 +0.6 4.1 hypothetical protein compare
MMP_RS08555 +0.6 2.0 hypothetical protein compare
MMP_RS08385 +0.6 3.0 ABC transporter substrate-binding protein compare
MMP_RS08770 +0.5 3.5 hypothetical protein compare
MMP_RS08265 +0.5 2.6 rubrerythrin compare
MMP_RS09050 +0.5 2.0 CAP domain-containing protein compare
MMP_RS08490 +0.5 4.5 hypothetical protein compare
MMP_RS08620 +0.5 3.3 flagellar accessory protein FlaH compare
MMP_RS07155 +0.5 3.1 MFS transporter compare
MMP_RS07910 +0.5 4.0 NAD(P)H-hydrate dehydratase compare
MMP_RS08410 +0.5 2.4 DUF169 domain-containing protein compare
MMP_RS06710 +0.5 3.5 selenium-binding protein compare
MMP_RS07890 +0.5 2.0 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS07985 +0.5 3.9 nitroreductase family protein compare
MMP_RS06325 +0.5 2.3 hypothetical protein compare
MMP_RS01055 +0.5 1.9 hypothetical protein compare
MMP_RS06520 +0.5 1.4 DUF1786 domain-containing protein compare
MMP_RS08415 +0.5 2.0 radical SAM protein compare
MMP_RS06540 +0.5 1.6 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS08475 +0.5 2.9 ABC transporter permease compare
MMP_RS06910 +0.5 3.1 RlmF-related methyltransferase compare
MMP_RS07645 +0.5 2.6 aldehyde dehydrogenase family protein compare
MMP_RS06530 +0.5 2.8 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMP_RS08290 +0.5 3.2 DNA-binding protein Alba compare
MMP_RS05985 +0.5 1.5 hypothetical protein compare
MMP_RS08080 +0.5 3.1 YchF/TatD family DNA exonuclease compare
MMP_RS00245 +0.5 4.2 type II secretion system F family protein compare
MMP_RS08130 +0.5 3.7 IGHMBP2 family helicase compare
MMP_RS08380 +0.5 3.0 phosphatase PAP2 family protein compare
MMP_RS08205 +0.5 3.9 stage II sporulation protein M compare
MMP_RS08250 +0.5 3.1 pyruvate kinase compare
MMP_RS08175 +0.5 3.3 7-cyano-7-deazaguanine synthase compare
MMP_RS07855 +0.5 3.6 class I SAM-dependent methyltransferase compare
MMP_RS02045 +0.5 1.2 tRNA-Met compare
MMP_RS08610 +0.5 3.5 flagellar protein F compare
MMP_RS08755 +0.5 3.5 sodium:solute symporter family protein compare
MMP_RS07680 +0.5 3.0 DUF366 family protein compare
MMP_RS08830 +0.4 1.9 GTP-binding protein compare
MMP_RS01570 +0.4 1.2 hypothetical protein compare
MMP_RS00535 +0.4 1.4 TIGR00375 family protein compare
MMP_RS00315 +0.4 2.3 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS08260 +0.4 2.4 DUF99 family protein compare
MMP_RS06335 +0.4 1.8 HAD family hydrolase compare
MMP_RS08500 +0.4 1.5 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS06545 +0.4 3.1 ferredoxin family protein compare
MMP_RS07925 +0.4 2.4 haloacid dehalogenase compare
MMP_RS07640 +0.4 3.0 mechanosensitive ion channel family protein compare
MMP_RS07715 +0.4 3.2 YfcE family phosphodiesterase compare
MMP_RS07590 +0.4 3.1 hypothetical protein compare
MMP_RS07100 +0.4 2.9 hypothetical protein compare
MMP_RS07905 +0.4 1.9 DUF3343 domain-containing protein compare
MMP_RS08285 +0.4 2.7 serine/threonine protein kinase compare
MMP_RS07140 +0.4 3.6 TIGR00341 family protein compare
MMP_RS07770 +0.4 1.7 alanine racemase compare
MMP_RS02300 +0.4 2.2 NAD(P)H-dependent oxidoreductase compare
MMP_RS08455 +0.4 2.2 multiprotein bridging factor aMBF1 compare
MMP_RS01290 +0.4 3.0 class III signal peptide-containing protein compare
MMP_RS07085 +0.4 2.7 ribonuclease HII compare
MMP_RS09035 +0.4 1.9 hypothetical protein compare
MMP_RS03910 +0.4 1.1 hypothetical protein compare
MMP_RS03465 +0.4 0.8 adenine phosphoribosyltransferase compare
MMP_RS07595 +0.4 3.2 hypothetical protein compare
MMP_RS06870 +0.4 2.4 DedA family protein compare
MMP_RS00280 +0.4 2.9 DUF2118 domain-containing protein compare
MMP_RS00545 +0.4 1.6 XRE family transcriptional regulator compare
MMP_RS08405 +0.4 3.2 MFS transporter compare
MMP_RS06445 +0.4 2.4 DUF89 domain-containing protein compare
MMP_RS07805 +0.4 2.3 ABC transporter permease compare
MMP_RS00240 +0.4 3.2 type II secretion system F family protein compare
MMP_RS08245 +0.4 2.5 DUF4013 domain-containing protein compare
MMP_RS07895 +0.4 1.5 cytochrome c compare
MMP_RS00185 +0.4 3.3 potassium channel protein compare
MMP_RS08430 +0.4 1.8 HAD family hydrolase compare
MMP_RS07850 +0.4 1.3 prephenate dehydratase compare
MMP_RS06935 +0.4 3.0 protease complex subunit PrcB family protein compare
MMP_RS07900 +0.4 1.1 YeeE/YedE family protein compare
MMP_RS07145 +0.4 2.2 AmmeMemoRadiSam system protein B compare
MMP_RS03760 +0.4 2.7 hypothetical protein compare
MMP_RS03065 +0.4 1.1 AzlC family ABC transporter permease compare
MMP_RS02960 +0.4 2.6 class I SAM-dependent methyltransferase family protein compare
MMP_RS09030 +0.4 2.1 hypothetical protein compare
MMP_RS03125 +0.4 1.9 cell division ATPase MinD compare
MMP_RS00665 +0.4 2.0 hypothetical protein compare
MMP_RS08470 +0.4 1.6 ATP-binding cassette domain-containing protein compare
MMP_RS06140 +0.4 2.2 radical SAM protein compare
MMP_RS06590 +0.4 1.6 GNAT family N-acetyltransferase compare
MMP_RS08230 +0.3 2.0 50S ribosomal protein L11 methyltransferase compare
MMP_RS08085 +0.3 1.8 hypothetical protein compare
MMP_RS00855 +0.3 2.3 DUF367 family protein compare
MMP_RS01980 +0.3 2.9 trimeric intracellular cation channel family protein compare
MMP_RS00540 +0.3 2.0 PLP-dependent aminotransferase family protein compare
MMP_RS04610 +0.3 1.9 Dabb family protein compare
MMP_RS02475 +0.3 1.1 hypothetical protein compare
MMP_RS00670 +0.3 1.3 TIM barrel protein compare
MMP_RS00285 +0.3 1.9 TIGR04013 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS07880 +0.3 1.9 AAA family ATPase compare
MMP_RS01125 +0.3 2.3 thioredoxin family protein compare
MMP_RS02740 +0.3 1.4 hypothetical protein compare
MMP_RS01655 +0.3 1.6 DsrE family protein compare
MMP_RS05365 +0.3 0.6 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
MMP_RS00250 +0.3 2.6 Flp pilus assembly complex ATPase component TadA compare
MMP_RS04530 +0.3 2.1 ABC transporter permease compare
MMP_RS06435 +0.3 1.9 CBS domain-containing protein compare
MMP_RS05715 +0.3 1.8 hypothetical protein compare
MMP_RS02020 +0.3 1.4 gamma-glutamylcyclotransferase compare
MMP_RS06745 +0.3 1.0 DUF2119 domain-containing protein compare
MMP_RS02470 +0.3 0.3 helix-turn-helix transcriptional regulator compare
MMP_RS07335 +0.3 1.0 tRNA (cytidine(56)-2'-O)-methyltransferase compare
MMP_RS01120 +0.3 1.4 permease compare
MMP_RS05940 +0.3 1.8 corrinoid protein compare
MMP_RS00035 +0.3 2.0 DUF2098 family protein compare
MMP_RS05675 +0.3 1.1 phosphate ABC transporter ATP-binding protein PstB compare
MMP_RS03625 +0.3 1.7 cell wall-binding protein compare
MMP_RS01630 +0.3 1.9 N-glycosylase/DNA lyase compare
MMP_RS01420 +0.3 0.9 hypothetical protein compare
MMP_RS06655 +0.3 1.7 glycoside hydrolase family 15 protein compare
MMP_RS07150 +0.3 1.8 MTH895/ArsE family thioredoxin-like protein compare
MMP_RS02410 +0.3 0.9 ABC transporter substrate-binding protein compare
MMP_RS05910 +0.3 1.2 cell division ATPase MinD compare
MMP_RS07570 +0.3 1.8 nucleotidyltransferase family protein compare
MMP_RS00125 +0.3 0.6 DUF2798 domain-containing protein compare
MMP_RS05355 +0.2 0.3 hypothetical protein compare
MMP_RS01085 +0.2 0.7 hypothetical protein compare
MMP_RS01620 +0.2 1.3 hypothetical protein compare
MMP_RS01260 +0.2 1.1 HDIG domain-containing protein compare
MMP_RS03790 +0.2 1.5 hypothetical protein compare
MMP_RS05090 +0.2 1.2 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS06660 +0.2 1.3 glycosyltransferase family 4 protein compare
MMP_RS06675 +0.2 1.7 ADP-specific phosphofructokinase compare
MMP_RS07095 +0.2 0.8 PspC domain-containing protein compare
MMP_RS00630 +0.2 1.6 ECF transporter S component compare
MMP_RS01165 +0.2 1.4 DUF434 domain-containing protein compare
MMP_RS01690 +0.2 1.5 indolepyruvate ferredoxin oxidoreductase subunit alpha compare
MMP_RS08315 +0.2 1.1 S-methyl-5-thioribose-1-phosphate isomerase compare
MMP_RS00800 +0.2 1.6 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS04410 +0.2 1.2 hypothetical protein compare
MMP_RS06875 +0.2 1.6 FAD-dependent oxidoreductase compare
MMP_RS06055 +0.2 1.3 peroxiredoxin compare
MMP_RS02295 +0.2 1.8 TatD family hydrolase compare
MMP_RS00740 +0.2 1.0 cyclase family protein compare
MMP_RS04015 +0.2 0.8 hypothetical protein compare
MMP_RS08685 +0.2 1.3 hypothetical protein compare
MMP_RS05960 +0.2 1.6 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS00100 +0.2 1.7 tRNA pseudouridine(13) synthase TruD compare
MMP_RS01070 +0.2 1.8 hypothetical protein compare
MMP_RS02320 +0.2 1.5 glutamate-cysteine ligase family protein compare
MMP_RS01310 +0.2 1.8 hypothetical protein compare
MMP_RS00140 +0.2 1.5 DUF192 domain-containing protein compare
MMP_RS03535 +0.2 0.7 helix-turn-helix transcriptional regulator compare
MMP_RS05975 +0.2 0.5 hypothetical protein compare
MMP_RS06250 +0.2 1.3 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For mixed community 1,3-Propanediol in Methanococcus maripaludis S2

For mixed community 1,3-Propanediol across organisms