Experiment set1IT066 for Rahnella sp. WP5

Compare to:

Ammonium chloride nitrogen source; RCH2 media; shaking

200 most important genes:

  gene name fitness t score description  
EX31_RS03695 -6.9 -4.8 3-isopropylmalate dehydratase small subunit compare
EX31_RS12825 -5.7 -6.7 ornithine carbamoyltransferase compare
EX31_RS02530 -5.6 -5.5 ABC transporter ATP-binding protein compare
EX31_RS15020 -5.6 -19.3 ketol-acid reductoisomerase compare
EX31_RS14190 -5.6 -13.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS14185 -5.6 -8.5 acetylglutamate kinase compare
EX31_RS12510 -5.5 -19.1 FAD-dependent oxidoreductase compare
EX31_RS12400 -5.5 -6.6 RNA polymerase factor sigma-54 compare
EX31_RS20980 -5.5 -6.6 glutamate 5-kinase compare
EX31_RS12515 -5.5 -26.7 glutamate synthase large subunit compare
EX31_RS03935 -5.5 -10.5 threonine synthase compare
EX31_RS03690 -5.4 -9.8 3-isopropylmalate dehydratase large subunit compare
EX31_RS13275 -5.4 -13.1 diaminopimelate decarboxylase compare
EX31_RS15005 -5.3 -18.3 dihydroxy-acid dehydratase compare
EX31_RS11470 -5.2 -3.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS04035 -5.2 -14.7 phosphoserine phosphatase compare
EX31_RS23245 -5.2 -18.0 asparagine synthase B compare
EX31_RS14180 -5.1 -17.1 argininosuccinate lyase compare
EX31_RS13160 -5.1 -14.0 amino-acid N-acetyltransferase compare
EX31_RS14215 -5.1 -21.8 cystathionine gamma-synthase compare
EX31_RS03835 -5.1 -9.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS11440 -5.0 -6.0 histidinol dehydrogenase compare
EX31_RS11735 -5.0 -9.6 homoserine O-succinyltransferase compare
EX31_RS02690 -5.0 -6.8 pyrroline-5-carboxylate reductase compare
EX31_RS03830 -5.0 -19.7 carbamoyl-phosphate synthase large subunit compare
EX31_RS23415 -4.9 -8.2 citrate synthase compare
EX31_RS03940 -4.9 -13.5 homoserine kinase compare
EX31_RS20975 -4.9 -8.8 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS03945 -4.9 -25.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS13445 -4.9 -17.9 argininosuccinate synthase compare
EX31_RS15880 -4.8 -10.3 nitrogen regulation protein NR(I) compare
EX31_RS14200 -4.8 -19.6 phosphoenolpyruvate carboxylase compare
EX31_RS16860 -4.8 -21.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS18530 -4.8 -16.1 leucine-responsive transcriptional regulator Lrp compare
EX31_RS20495 -4.8 -11.6 outer membrane protein assembly factor BamB compare
EX31_RS21470 -4.8 -11.5 phosphoglycerate dehydrogenase compare
EX31_RS03685 -4.8 -16.6 3-isopropylmalate dehydrogenase compare
EX31_RS09975 -4.7 -7.9 tryptophan synthase subunit beta compare
EX31_RS22750 -4.7 -5.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS09965 -4.7 -6.5 anthranilate phosphoribosyltransferase compare
EX31_RS03775 -4.7 -4.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS16855 -4.6 -16.6 phosphoribosylamine--glycine ligase compare
EX31_RS02515 -4.5 -6.2 PAS domain-containing protein compare
EX31_RS07870 -4.5 -10.9 adenylyl-sulfate kinase compare
EX31_RS21895 -4.5 -21.2 phosphoribosylformylglycinamidine synthase compare
EX31_RS09970 -4.5 -8.0 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS22695 -4.5 -11.1 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS09980 -4.4 -7.4 tryptophan synthase subunit alpha compare
EX31_RS22625 -4.4 -5.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS11460 -4.4 -5.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS11465 -4.3 -8.2 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS21850 -4.3 -2.9 pyridoxine 5'-phosphate synthase compare
EX31_RS11455 -4.2 -5.8 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS19570 -4.2 -15.6 amidophosphoribosyltransferase compare
EX31_RS09960 -4.2 -5.0 glutamine amidotransferase compare
EX31_RS05785 -4.2 -5.7 superoxide dismutase [Mn] compare
EX31_RS11445 -4.1 -9.2 histidinol-phosphate transaminase compare
EX31_RS09890 -4.1 -13.2 HTH-type transcriptional regulator CysB compare
EX31_RS14310 -4.1 -4.0 6-phosphofructokinase compare
EX31_RS11450 -4.0 -8.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS09955 -4.0 -8.5 anthranilate synthase component 1 compare
EX31_RS20450 -3.9 -8.4 IMP dehydrogenase compare
EX31_RS18255 -3.9 -2.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS24385 -3.9 -5.3 dihydroorotase compare
EX31_RS23440 -3.8 -2.6 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS14500 -3.8 -11.7 orotate phosphoribosyltransferase compare
EX31_RS15875 -3.8 -16.1 nitrogen regulation protein NR(II) compare
EX31_RS15870 -3.7 -2.5 glutamate--ammonia ligase compare
EX31_RS03250 -3.7 -9.5 RNA polymerase-binding protein DksA compare
EX31_RS14205 -3.6 -14.9 methylenetetrahydrofolate reductase compare
EX31_RS07585 -3.6 -11.6 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS20175 -3.6 -10.6 cysteine synthase A compare
EX31_RS22620 -3.5 -8.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS18540 -3.5 -4.8 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS18095 -3.5 -7.5 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS22245 -3.5 -5.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS02520 -3.5 -5.4 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS09855 -3.4 -5.9 orotidine-5'-phosphate decarboxylase compare
EX31_RS03680 -3.3 -12.2 2-isopropylmalate synthase compare
EX31_RS14340 -3.2 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS07590 -3.1 -3.0 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS14335 -3.1 -2.1 serine O-acetyltransferase compare
EX31_RS12785 -3.1 -11.6 aspartate carbamoyltransferase compare
EX31_RS07895 -3.0 -11.6 phosphoadenylyl-sulfate reductase compare
EX31_RS19610 -2.9 -9.4 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS08535 -2.8 -4.2 30S ribosome-binding factor RbfA compare
EX31_RS07905 -2.8 -16.2 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS07955 -2.8 -17.0 GTP diphosphokinase compare
EX31_RS25370 -2.8 -12.5 HTH-type transcriptional regulator MetR compare
EX31_RS18525 -2.7 -4.8 DNA translocase FtsK compare
EX31_RS07900 -2.7 -13.3 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS11815 -2.7 -12.0 glucose-6-phosphate isomerase compare
EX31_RS06055 -2.7 -4.8 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS07595 -2.7 -9.8 3-deoxy-7-phosphoheptulonate synthase compare
EX31_RS15010 -2.6 -10.7 threonine ammonia-lyase, biosynthetic compare
EX31_RS08720 -2.6 -11.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS07875 -2.5 -16.3 sulfate adenylyltransferase subunit CysN compare
EX31_RS04630 -2.5 -11.4 aspartate aminotransferase family protein compare
EX31_RS08745 -2.4 -2.8 50S ribosomal protein L9 compare
EX31_RS22250 -2.4 -6.8 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS07880 -2.3 -14.3 sulfate adenylyltransferase subunit CysD compare
EX31_RS03480 -2.3 -3.7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS23500 -2.2 -5.2 peptidoglycan-associated lipoprotein Pal compare
EX31_RS19375 -2.2 -5.1 NADH-quinone oxidoreductase subunit NuoN compare
EX31_RS15155 -2.2 -3.2 diaminopimelate epimerase compare
EX31_RS23490 -2.1 -3.9 cell envelope integrity protein TolA compare
EX31_RS22145 -2.0 -2.7 phosphatidylglycerophosphatase A compare
EX31_RS25885 -2.0 -3.7 type VI secretion system baseplate subunit TssG compare
EX31_RS03035 -2.0 -9.0 LysE family transporter compare
EX31_RS14620 -2.0 -2.5 SCP2 domain-containing protein compare
EX31_RS06070 -2.0 -8.1 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS07560 -1.9 -14.4 ATP-dependent chaperone ClpB compare
EX31_RS06620 -1.8 -2.8 electron transport complex subunit RsxA compare
EX31_RS12875 -1.8 -2.7 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS21400 -1.7 -6.0 transketolase compare
EX31_RS13045 -1.7 -10.9 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS20735 -1.7 -4.8 exodeoxyribonuclease V subunit beta compare
EX31_RS06150 -1.7 -11.0 transcriptional regulator AsnC compare
EX31_RS11675 -1.7 -2.1 Holliday junction branch migration protein RuvA compare
EX31_RS18305 -1.7 -3.0 tail fiber assembly protein compare
EX31_RS11435 -1.6 -4.3 ATP phosphoribosyltransferase compare
EX31_RS21570 -1.6 -3.7 hypothetical protein compare
EX31_RS23485 -1.6 -2.5 colicin uptake protein TolR compare
EX31_RS09895 -1.6 -2.6 type I DNA topoisomerase compare
EX31_RS02360 -1.6 -1.7 CsbD family protein compare
EX31_RS19600 -1.6 -6.7 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS21280 -1.5 -1.8 hydroxymyristoyl-ACP dehydratase compare
EX31_RS25660 -1.5 -1.3 multidrug efflux pump-associated protein, AcrZ family compare
EX31_RS23495 -1.5 -5.7 Tol-Pal system protein TolB compare
EX31_RS06065 -1.5 -6.2 phosphate ABC transporter permease PstC compare
EX31_RS14220 -1.5 -3.1 met regulon transcriptional regulator MetJ compare
EX31_RS20895 -1.5 -2.7 hypothetical protein compare
EX31_RS04390 -1.5 -2.6 DNA polymerase III subunit chi compare
EX31_RS26005 -1.4 -2.7 transposase compare
EX31_RS02235 -1.4 -3.8 helix-turn-helix transcriptional regulator compare
EX31_RS04925 -1.4 -3.4 Fe-S biogenesis protein NfuA compare
EX31_RS22740 -1.4 -6.7 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS25410 -1.4 -1.1 transposase compare
EX31_RS25375 -1.4 -2.9 ilv operon leader peptide compare
EX31_RS10115 -1.4 -7.2 formyltetrahydrofolate deformylase compare
EX31_RS08130 -1.3 -2.0 accessory factor UbiK family protein compare
EX31_RS11625 -1.3 -1.2 hypothetical protein compare
EX31_RS21805 -1.3 -1.9 anti-sigma-E factor RseA compare
EX31_RS15000 -1.3 -7.8 branched-chain amino acid transaminase compare
EX31_RS17615 -1.3 -2.1 hypothetical protein compare
EX31_RS10325 -1.3 -2.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
EX31_RS03030 -1.3 -6.5 helix-turn-helix transcriptional regulator compare
EX31_RS21190 -1.2 -3.1 ribonuclease HI compare
EX31_RS25070 -1.2 -2.5 DUF551 domain-containing protein compare
EX31_RS24395 -1.2 -3.7 ribonuclease E compare
EX31_RS03400 -1.2 -4.1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS22690 -1.2 -6.0 phosphoribosylglycinamide formyltransferase compare
EX31_RS16625 -1.2 -1.0 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
EX31_RS25340 -1.2 -3.2 hypothetical protein compare
EX31_RS11240 -1.2 -2.3 GNAT family N-acetyltransferase compare
EX31_RS01970 -1.1 -1.1 hypothetical protein compare
EX31_RS06000 -1.1 -3.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS01850 -1.1 -2.2 type VI secretion system contractile sheath small subunit compare
EX31_RS02740 -1.1 -1.0 oxidative damage protection protein compare
EX31_RS24220 -1.1 -1.1 hypothetical protein compare
EX31_RS10825 -1.1 -1.3 hypothetical protein compare
EX31_RS19385 -1.1 -3.4 NADH-quinone oxidoreductase subunit L compare
EX31_RS06670 -1.0 -2.1 FadR family transcriptional regulator compare
EX31_RS06060 -1.0 -3.0 phosphate ABC transporter permease PstA compare
EX31_RS06140 -1.0 -6.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS01955 -1.0 -1.7 DUF2931 family protein compare
EX31_RS03710 -1.0 -1.3 glucose uptake inhibitor SgrT compare
EX31_RS08150 -1.0 -6.8 inorganic triphosphatase compare
EX31_RS19655 -1.0 -3.0 beta-ketoacyl-ACP synthase I compare
EX31_RS10020 -1.0 -1.5 YciI family protein compare
EX31_RS14990 -1.0 -6.4 acetolactate synthase 2 catalytic subunit compare
EX31_RS20185 -1.0 -3.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS24765 -1.0 -1.4 non-heme ferritin compare
EX31_RS07750 -1.0 -6.2 glutamate--cysteine ligase compare
EX31_RS25125 -1.0 -2.5 thr operon leader peptide compare
EX31_RS19480 -1.0 -4.0 acetate kinase compare
EX31_RS25365 -1.0 -0.9 50S ribosomal protein L31 compare
EX31_RS09655 -1.0 -1.0 membrane protein compare
EX31_RS13780 -0.9 -2.1 DUF1656 domain-containing protein compare
EX31_RS10030 -0.9 -1.1 YciY family protein compare
EX31_RS11540 -0.9 -2.3 dCTP deaminase compare
EX31_RS01225 -0.9 -1.6 glutaredoxin-dependent arsenate reductase compare
EX31_RS12175 -0.9 -2.7 DNA-binding transcriptional regulator Fis compare
EX31_RS02920 -0.9 -1.2 glycosyltransferase compare
EX31_RS01280 -0.9 -1.8 SgcJ/EcaC family oxidoreductase compare
EX31_RS10360 -0.9 -2.9 ClbS/DfsB family four-helix bundle protein compare
EX31_RS01815 -0.9 -2.9 (S)-acetoin forming diacetyl reductase compare
EX31_RS10590 -0.9 -1.4 cell division topological specificity factor MinE compare
EX31_RS07135 -0.9 -1.3 hypothetical protein compare
EX31_RS17285 -0.9 -2.8 carboxy-S-adenosyl-L-methionine synthase CmoA compare
EX31_RS08515 -0.9 -7.1 lipoprotein NlpI compare
EX31_RS14575 -0.9 -4.2 NAD(P)H-flavin reductase compare
EX31_RS11690 -0.9 -2.0 dihydroneopterin triphosphate diphosphatase compare
EX31_RS03040 -0.9 -5.1 hypothetical protein compare
EX31_RS20180 -0.9 -2.1 phosphocarrier protein Hpr compare
EX31_RS20210 -0.9 -3.7 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
EX31_RS16845 -0.9 -1.9 DNA-binding protein HU-alpha compare
EX31_RS22430 -0.9 -1.1 hemolysin expression modulator Hha compare
EX31_RS09470 -0.9 -2.4 flagella biosynthesis regulatory protein FliT compare
EX31_RS09495 -0.9 -2.1 DUF4186 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms