Experiment set1IT044 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium Chlorite 0.08 mM

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_4153 +2.3 6.0 Sensory box histidine kinase compare
Pf6N2E2_3843 +1.9 17.5 MFS permease conserved
Pf6N2E2_5178 +1.3 3.2 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2755 +1.2 3.9 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_1886 +1.1 1.5 hypothetical protein compare
Pf6N2E2_5394 +1.1 3.4 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_3661 +1.1 5.1 hypothetical protein compare
Pf6N2E2_2106 +1.0 3.0 hypothetical protein compare
Pf6N2E2_2323 +1.0 3.7 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_1032 +1.0 1.7 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_98 +1.0 2.3 putative transmembrane protein compare
Pf6N2E2_5694 +0.9 6.3 Flagellar basal-body rod protein FlgB compare
Pf6N2E2_2124 +0.9 2.2 Mg(2+) transport ATPase protein C compare
Pf6N2E2_5695 +0.9 6.9 Flagellar basal-body rod protein FlgC compare
Pf6N2E2_3791 +0.9 7.3 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_2597 +0.9 7.3 Flagellar regulatory protein FleQ compare
Pf6N2E2_4743 +0.9 1.8 hypothetical protein compare
Pf6N2E2_2795 +0.9 3.0 putative exported protein compare
Pf6N2E2_2594 +0.9 6.7 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_1445 +0.9 1.8 Glutathione S-transferase compare
Pf6N2E2_2674 +0.9 1.7 FIG00953856: hypothetical protein compare
Pf6N2E2_4057 +0.9 1.4 lipoprotein, putative compare
Pf6N2E2_629 +0.8 2.0 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf6N2E2_827 +0.8 2.8 probable dioxygenase compare
Pf6N2E2_4054 +0.8 1.7 Osmotically inducible protein C compare
Pf6N2E2_3663 +0.8 4.0 Glycosyl transferase compare
Pf6N2E2_3778 +0.8 3.6 FIG00954300: hypothetical protein compare
Pf6N2E2_2752 +0.8 5.8 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_2825 +0.8 4.0 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_2585 +0.8 5.3 Flagellar hook-length control protein FliK compare
Pf6N2E2_5771 +0.8 4.7 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_1617 +0.8 1.4 COG2199: FOG: GGDEF domain compare
Pf6N2E2_1116 +0.8 1.4 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_4982 +0.8 4.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
Pf6N2E2_2590 +0.7 6.1 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_1424 +0.7 1.8 transcriptional regulator, TetR family compare
Pf6N2E2_4181 +0.7 1.9 Organic hydroperoxide resistance protein compare
Pf6N2E2_2582 +0.7 1.9 Flagellar motor switch protein FliN compare
Pf6N2E2_3875 +0.7 1.7 FIG00953324: hypothetical protein compare
Pf6N2E2_5150 +0.7 4.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2970 +0.7 3.3 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf6N2E2_5677 +0.7 1.4 Carbon storage regulator compare
Pf6N2E2_5499 +0.7 1.5 hypothetical protein compare
Pf6N2E2_2425 +0.7 2.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3257 +0.7 3.9 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_2627 +0.7 3.0 Flagellar basal-body rod protein FlgG compare
Pf6N2E2_2563 +0.7 6.2 FIG00953562: hypothetical protein compare
Pf6N2E2_5697 +0.7 6.0 Flagellar hook protein FlgE compare
Pf6N2E2_1824 +0.7 2.4 hypothetical protein compare
Pf6N2E2_2507 +0.7 4.4 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_1762 +0.7 2.3 putative lipase compare
Pf6N2E2_3634 +0.7 1.5 Transporter compare
Pf6N2E2_2576 +0.7 5.6 Flagellar biosynthesis protein FlhA compare
Pf6N2E2_500 +0.7 1.7 Beta-ureidopropionase (EC 3.5.1.6) compare
Pf6N2E2_5733 +0.7 3.8 NLP/P60 family protein compare
Pf6N2E2_4584 +0.7 2.7 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5739 +0.7 1.7 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_3664 +0.7 5.1 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_3659 +0.7 3.9 Protein fixF compare
Pf6N2E2_3454 +0.7 1.6 hypothetical protein compare
Pf6N2E2_6038 +0.7 1.4 hypothetical protein compare
Pf6N2E2_476 +0.7 2.0 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_2513 +0.7 2.6 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_4367 +0.7 1.6 hypothetical protein compare
Pf6N2E2_987 +0.6 1.9 hypothetical protein compare
Pf6N2E2_1602 +0.6 2.8 hypothetical protein compare
Pf6N2E2_5536 +0.6 1.2 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4974 +0.6 4.1 DedA protein compare
Pf6N2E2_5691 +0.6 4.9 Flagellar basal-body P-ring formation protein FlgA compare
Pf6N2E2_5392 +0.6 2.5 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_4479 +0.6 3.3 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_58 +0.6 1.5 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_2592 +0.6 2.7 Flagellar motor switch protein FliG compare
Pf6N2E2_1258 +0.6 2.5 FIG00960119: hypothetical protein compare
Pf6N2E2_2580 +0.6 2.0 Flagellar biosynthesis protein FliP compare
Pf6N2E2_5898 +0.6 3.1 Integral membrane protein compare
Pf6N2E2_1320 +0.6 2.4 Putative response regulator compare
Pf6N2E2_3201 +0.6 2.9 Transcriptional regulator, MerR family conserved
Pf6N2E2_2625 +0.6 3.1 Flagellar P-ring protein FlgI compare
Pf6N2E2_3944 +0.6 1.8 Protein of unknown function DUF81 compare
Pf6N2E2_5962 +0.6 3.8 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_5494 +0.6 3.1 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_1441 +0.6 1.8 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_2578 +0.6 1.4 Flagellar biosynthesis protein FliR compare
Pf6N2E2_923 +0.6 1.8 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_2591 +0.6 3.7 Flagellar assembly protein FliH compare
Pf6N2E2_2754 +0.6 2.0 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_2577 +0.6 3.6 Flagellar biosynthesis protein FlhB compare
Pf6N2E2_2195 +0.6 2.0 cI compare
Pf6N2E2_2007 +0.6 2.7 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_2588 +0.6 2.0 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_2624 +0.6 3.6 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
Pf6N2E2_2573 +0.6 3.4 RNA polymerase sigma factor for flagellar operon compare
Pf6N2E2_1885 +0.6 1.3 Transcriptional regulator, AraC family compare
Pf6N2E2_2583 +0.6 3.6 Flagellar motor switch protein FliM compare
Pf6N2E2_942 +0.6 1.4 Mll6465 protein compare
Pf6N2E2_2423 +0.6 3.4 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_5346 +0.6 1.7 rRNA small subunit methyltransferase I compare
Pf6N2E2_664 +0.6 1.8 Acetoin catabolism protein X compare
Pf6N2E2_3891 +0.6 4.3 Putative formate dehydrogenase oxidoreductase protein compare
Pf6N2E2_2508 +0.5 2.1 hypothetical protein compare
Pf6N2E2_5337 +0.5 2.8 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_544 +0.5 1.8 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_3725 +0.5 1.4 FIG085779: Lipoprotein compare
Pf6N2E2_5226 +0.5 1.5 FIG00955589: hypothetical protein compare
Pf6N2E2_445 +0.5 3.1 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_919 +0.5 1.6 FIG00954373: hypothetical protein compare
Pf6N2E2_414 +0.5 2.1 Chemotaxis protein CheD compare
Pf6N2E2_5223 +0.5 2.2 Molybdopterin biosynthesis protein MoeB compare
Pf6N2E2_2791 +0.5 2.0 FIG00954883: hypothetical protein compare
Pf6N2E2_4611 +0.5 2.2 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4810 +0.5 2.9 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_1596 +0.5 1.3 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_1676 +0.5 1.6 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_1502 +0.5 1.6 Two-component system regulatory protein compare
Pf6N2E2_5444 +0.5 1.7 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) compare
Pf6N2E2_127 +0.5 0.8 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_1935 +0.5 2.1 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_5842 +0.5 2.4 Transcriptional regulator, TetR family compare
Pf6N2E2_2575 +0.5 2.9 Flagellar biosynthesis protein FlhF compare
Pf6N2E2_946 +0.5 1.3 Transcriptional regulator, LysR family compare
Pf6N2E2_2418 +0.5 1.9 DNA-binding response regulator, LuxR family compare
Pf6N2E2_3890 +0.5 3.7 Formate dehydrogenase chain D (EC 1.2.1.2) compare
Pf6N2E2_3792 +0.5 2.4 Glucans biosynthesis protein G precursor compare
Pf6N2E2_1896 +0.5 1.0 hypothetical protein compare
Pf6N2E2_2261 +0.5 2.9 VacJ-like lipoprotein precursor compare
Pf6N2E2_2506 +0.5 3.8 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_6035 +0.5 1.2 alpha/beta hydrolase fold compare
Pf6N2E2_4773 +0.5 0.8 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_6052 +0.5 1.7 Hydantoin racemase (EC 5.1.99.-) compare
Pf6N2E2_734 +0.5 1.4 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_5906 +0.5 1.8 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_1248 +0.5 1.6 MutT/nudix family protein compare
Pf6N2E2_431 +0.5 2.3 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Pf6N2E2_763 +0.5 2.4 Sigma-54 dependent transcriptional regulator compare
Pf6N2E2_1022 +0.5 1.5 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf6N2E2_4331 +0.5 1.9 hypothetical protein compare
Pf6N2E2_4710 +0.5 1.8 hypothetical protein compare
Pf6N2E2_2018 +0.5 1.7 hypothetical protein compare
Pf6N2E2_2176 +0.5 0.8 Amidases related to nicotinamidase compare
Pf6N2E2_959 +0.5 2.0 putative membrane protein compare
Pf6N2E2_5339 +0.5 3.4 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3889 +0.5 2.3 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2723 +0.5 2.1 YcgN (Fragment) compare
Pf6N2E2_4263 +0.4 1.7 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf6N2E2_1932 +0.4 1.9 Transcriptional regulator, IclR family compare
Pf6N2E2_2510 +0.4 1.9 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_572 +0.4 0.9 hypothetical protein compare
Pf6N2E2_522 +0.4 1.8 Inositol transport system sugar-binding protein compare
Pf6N2E2_662 +0.4 2.6 Valyl-tRNA synthetase compare
Pf6N2E2_1496 +0.4 1.7 Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_1328 +0.4 1.8 Methyl-accepting chemotaxis protein compare
Pf6N2E2_2013 +0.4 0.8 hypothetical protein compare
Pf6N2E2_2324 +0.4 1.1 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_6030 +0.4 2.1 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_2566 +0.4 2.8 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_3386 +0.4 2.1 hypothetical protein compare
Pf6N2E2_122 +0.4 0.7 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_3985 +0.4 2.1 Predicted regulator PutR for proline utilization, GntR family compare
Pf6N2E2_1316 +0.4 2.0 P-hydroxyphenylacetate hydroxylase C1:reductase component compare
Pf6N2E2_2584 +0.4 2.9 Flagellar biosynthesis protein FliL compare
Pf6N2E2_2623 +0.4 3.7 Flagellar hook-associated protein FlgK compare
Pf6N2E2_2734 +0.4 1.7 Transcriptional regulator, LysR family compare
Pf6N2E2_1110 +0.4 1.7 FIG00964414: hypothetical protein compare
Pf6N2E2_75 +0.4 1.4 Colicin V production protein compare
Pf6N2E2_2340 +0.4 1.3 Transcriptional regulator, GntR family compare
Pf6N2E2_576 +0.4 2.0 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Pf6N2E2_3643 +0.4 2.6 Predicted hydroxymethylpyrimidine transporter CytX compare
Pf6N2E2_3658 +0.4 2.6 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2626 +0.4 3.2 Flagellar L-ring protein FlgH compare
Pf6N2E2_2017 +0.4 1.0 DNA-binding protein compare
Pf6N2E2_2080 +0.4 0.8 hypothetical protein compare
Pf6N2E2_2422 +0.4 3.2 Molybdopterin biosynthesis protein MoeA compare
Pf6N2E2_1056 +0.4 0.4 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_1512 +0.4 1.8 Thiamin biosynthesis lipoprotein ApbE compare
Pf6N2E2_3134 +0.4 0.7 hypothetical protein compare
Pf6N2E2_4025 +0.4 1.1 hypothetical protein compare
Pf6N2E2_5705 +0.4 0.8 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_5271 +0.4 1.5 FIG00953380: hypothetical protein compare
Pf6N2E2_2823 +0.4 1.7 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_1838 +0.4 1.9 6-hexanolactone hydrolase compare
Pf6N2E2_5338 +0.4 2.7 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5052 +0.4 1.2 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_4996 +0.4 1.2 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_3258 +0.4 2.2 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_1083 +0.4 1.1 hypothetical protein compare
Pf6N2E2_2778 +0.4 2.0 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_1391 +0.4 0.8 DNA-binding response regulator, LuxR family compare
Pf6N2E2_70 +0.4 1.6 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5672 +0.4 2.1 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) compare
Pf6N2E2_2589 +0.4 1.8 Flagellar protein FliJ compare
Pf6N2E2_2579 +0.4 2.3 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_617 +0.4 1.5 Probable glutathione S-transferase compare
Pf6N2E2_848 +0.4 1.7 hypothetical protein compare
Pf6N2E2_1065 +0.4 1.3 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_4987 +0.4 0.8 MaoC-like domain protein compare
Pf6N2E2_3617 +0.4 1.8 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5252 +0.4 0.9 FIG00956396: hypothetical protein compare
Pf6N2E2_1209 +0.4 2.3 hypothetical protein compare
Pf6N2E2_2827 +0.4 0.8 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For stress Sodium Chlorite in Pseudomonas fluorescens FW300-N2E2

For stress Sodium Chlorite across organisms