Experiment set1IT043 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Histidine carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS16265 -8.0 -5.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS18305 -6.5 -4.5 anthranilate phosphoribosyltransferase compare
RR42_RS14365 -6.4 -4.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS30655 -6.4 -4.4 LysR family transcriptional regulator compare
RR42_RS14390 -5.9 -4.0 3-isopropylmalate dehydratase compare
RR42_RS02705 -5.6 -2.5 Holliday junction DNA helicase RuvA compare
RR42_RS06485 -5.5 -5.4 chorismate synthase compare
RR42_RS18295 -5.4 -10.9 anthranilate synthase component I compare
RR42_RS19005 -5.4 -6.3 3-dehydroquinate synthase compare
RR42_RS16280 -5.3 -10.1 transcriptional regulator compare
RR42_RS05860 -5.3 -5.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS04475 -5.1 -10.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS01385 -5.0 -4.3 5,10-methylenetetrahydrofolate reductase compare
RR42_RS14400 -5.0 -3.4 isopropylmalate isomerase compare
RR42_RS16250 -4.5 -8.5 sulfate adenylyltransferase compare
RR42_RS01160 -4.5 -10.5 homoserine O-acetyltransferase compare
RR42_RS14320 -4.2 -6.1 O-succinylhomoserine sulfhydrylase compare
RR42_RS01290 -4.1 -7.1 thiamine biosynthesis protein ThiC compare
RR42_RS04470 -4.0 -6.6 prephenate dehydrogenase compare
RR42_RS19010 -4.0 -7.0 shikimate kinase compare
RR42_RS16255 -3.8 -8.7 sulfate adenylyltransferase compare
RR42_RS13800 -3.8 -8.8 formyltetrahydrofolate deformylase compare
RR42_RS30660 -3.8 -7.4 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS14385 -3.7 -5.4 3-isopropylmalate dehydrogenase compare
RR42_RS16270 -3.7 -8.5 sulfite reductase compare
RR42_RS17390 -3.5 -8.8 ATP-dependent DNA helicase RecG compare
RR42_RS21220 -3.4 -3.2 iron transporter FeoB compare
RR42_RS01845 -3.3 -2.8 glycerol-3-phosphate dehydrogenase compare
RR42_RS18300 -3.2 -4.6 anthranilate synthase subunit II compare
RR42_RS17645 -3.2 -8.5 shikimate dehydrogenase compare
RR42_RS14360 -3.2 -1.9 tryptophan synthase subunit alpha compare
RR42_RS16240 -3.1 -1.9 cobalamin biosynthesis protein CbiX compare
RR42_RS07325 -2.9 -8.0 exodeoxyribonuclease III compare
RR42_RS05990 -2.8 -6.7 aromatic amino acid aminotransferase compare
RR42_RS16275 -2.8 -3.8 membrane protein compare
RR42_RS02500 -2.6 -2.9 TetR family transcriptional regulator compare
RR42_RS31830 -2.5 -2.2 short-chain dehydrogenase compare
RR42_RS17720 -2.5 -2.5 sugar kinase compare
RR42_RS04535 -2.5 -3.6 cysteine synthase compare
RR42_RS16245 -2.3 -4.2 uroporphyrin-III methyltransferase compare
RR42_RS04460 -2.3 -4.5 chorismate mutase compare
RR42_RS12050 -2.3 -6.6 DNA polymerase compare
RR42_RS03080 -2.3 -3.9 recombinase RecA compare
RR42_RS15050 -2.2 -9.5 DNA polymerase I compare
RR42_RS16895 -2.1 -7.5 N-formylglutamate deformylase (EC 3.5.1.68) (from data) conserved
RR42_RS18485 -2.1 -1.6 glutaredoxin compare
RR42_RS31900 -2.1 -3.4 short-chain dehydrogenase compare
RR42_RS20205 -2.0 -3.1 chromosome partitioning protein compare
RR42_RS11790 -2.0 -8.7 phosphoenolpyruvate synthase compare
RR42_RS33355 -1.8 -5.1 membrane protein compare
RR42_RS06020 -1.8 -1.5 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS15035 -1.8 -3.6 ZIP zinc transporter compare
RR42_RS12860 -1.7 -1.8 pseudouridine synthase compare
RR42_RS02085 -1.7 -6.6 RNA polymerase subunit sigma-54 compare
RR42_RS19485 -1.7 -1.6 general secretion pathway protein GspH compare
RR42_RS04060 -1.7 -3.6 hypothetical protein compare
RR42_RS04145 -1.6 -1.5 peptidase A24 compare
RR42_RS16905 -1.6 -5.2 Imidazolonepropionase (EC 3.5.2.7) (from data) conserved
RR42_RS20775 -1.6 -1.2 hypothetical protein compare
RR42_RS08260 -1.6 -2.4 hypothetical protein compare
RR42_RS32740 -1.5 -1.3 enoyl-CoA hydratase compare
RR42_RS01695 -1.5 -8.8 C4-dicarboxylate transporter compare
RR42_RS01380 -1.5 -1.5 membrane protein compare
RR42_RS01920 -1.5 -2.5 protoheme IX farnesyltransferase compare
RR42_RS26080 -1.5 -1.4 hypothetical protein compare
RR42_RS30640 -1.5 -6.6 DNA mismatch repair protein MutT compare
RR42_RS36920 -1.5 -2.9 TetR family transcriptional regulator compare
RR42_RS37400 -1.4 -1.3 6-phosphogluconolactonase compare
RR42_RS16260 -1.4 -1.3 phosphoadenosine phosphosulfate reductase compare
RR42_RS11795 -1.4 -2.2 PEP synthetase regulatory protein compare
RR42_RS03345 -1.4 -4.3 recombinase XerD compare
RR42_RS15090 -1.4 -4.2 DNA helicase compare
RR42_RS11655 -1.4 -1.8 heat-shock protein Hsp20 compare
RR42_RS14030 -1.4 -3.9 DNA recombination protein RecO conserved
RR42_RS31530 -1.4 -2.7 histidine kinase compare
RR42_RS36105 -1.4 -3.0 MarR family transcriptional regulator compare
RR42_RS05420 -1.4 -3.9 membrane protein compare
RR42_RS07555 -1.4 -1.6 potassium transporter Kup compare
RR42_RS15640 -1.4 -1.1 hypothetical protein compare
RR42_RS13180 -1.4 -7.1 3'-5' exonuclease compare
RR42_RS08210 -1.3 -1.2 hypothetical protein compare
RR42_RS22295 -1.3 -2.1 methionine sulfoxide reductase B compare
RR42_RS07365 -1.3 -3.0 pyruvate dehydrogenase compare
RR42_RS04180 -1.3 -2.0 methyltransferase compare
RR42_RS33575 -1.3 -2.6 hypothetical protein compare
RR42_RS34650 -1.3 -3.7 LacI family transcriptional regulator compare
RR42_RS06545 -1.3 -2.1 thioesterase compare
RR42_RS12130 -1.3 -2.3 hypothetical protein compare
RR42_RS18385 -1.2 -1.9 hypothetical protein compare
RR42_RS00615 -1.2 -4.7 recombinase XerC compare
RR42_RS35250 -1.2 -1.2 alpha/beta hydrolase compare
RR42_RS25200 -1.2 -4.0 TetR family transcriptional regulator compare
RR42_RS02380 -1.2 -5.2 FAD-linked oxidase compare
RR42_RS04700 -1.2 -1.5 ribonuclease G compare
RR42_RS19895 -1.2 -1.9 elongation factor GreAB compare
RR42_RS18020 -1.2 -3.1 ornithine acetyltransferase compare
RR42_RS27710 -1.2 -2.1 LysR family transcriptional regulator compare
RR42_RS19635 -1.2 -1.1 hypothetical protein compare
RR42_RS33260 -1.1 -4.5 multidrug MFS transporter compare
RR42_RS35895 -1.1 -3.2 PadR family transcriptional regulator compare
RR42_RS13270 -1.1 -6.5 recombination protein RecR compare
RR42_RS16135 -1.1 -2.4 ABC transporter permease compare
RR42_RS06875 -1.1 -1.7 hypothetical protein compare
RR42_RS14965 -1.1 -3.5 hypothetical protein compare
RR42_RS24760 -1.1 -1.2 hypothetical protein compare
RR42_RS15055 -1.1 -3.9 hypothetical protein compare
RR42_RS05975 -1.1 -2.3 ferredoxin compare
RR42_RS18855 -1.1 -3.3 preprotein translocase compare
RR42_RS33235 -1.1 -5.5 GDP-mannose 4,6-dehydratase compare
RR42_RS37240 -1.1 -1.4 hypothetical protein compare
RR42_RS27120 -1.1 -1.4 amino acid ABC transporter permease compare
RR42_RS28290 -1.1 -2.0 DNA-binding protein compare
RR42_RS21685 -1.1 -2.7 hypothetical protein compare
RR42_RS33250 -1.1 -3.6 tyrosine protein kinase compare
RR42_RS00715 -1.1 -2.8 ferritin compare
RR42_RS16140 -1.1 -6.1 TonB-dependent receptor compare
RR42_RS29780 -1.1 -2.3 hypothetical protein compare
RR42_RS12590 -1.1 -0.9 50S ribosomal protein L9 compare
RR42_RS03620 -1.1 -2.6 lipid A biosynthesis lauroyl acyltransferase compare
RR42_RS22590 -1.1 -0.9 organic hydroperoxide resistance protein compare
RR42_RS27950 -1.1 -2.6 peptidylprolyl isomerase compare
RR42_RS01400 -1.1 -4.9 5-formyltetrahydrofolate cyclo-ligase compare
RR42_RS00775 -1.0 -7.1 methionine synthase compare
RR42_RS08865 -1.0 -2.7 hydroxylase compare
RR42_RS15120 -1.0 -1.4 4-oxalocrotonate tautomerase compare
RR42_RS12875 -1.0 -1.9 transcriptional regulator compare
RR42_RS33255 -1.0 -1.4 protein-tyrosine phosphatase compare
RR42_RS24930 -1.0 -1.0 AraC family transcriptional regulator compare
RR42_RS29280 -1.0 -1.0 hypothetical protein compare
RR42_RS25625 -1.0 -2.1 LysR family transcriptional regulator compare
RR42_RS00860 -1.0 -3.3 MerR family transcriptional regulator compare
RR42_RS03560 -1.0 -2.2 hypothetical protein compare
RR42_RS05085 -1.0 -3.1 2-aminomuconate deaminase compare
RR42_RS06585 -1.0 -7.5 GTP pyrophosphokinase compare
RR42_RS33195 -1.0 -5.2 UDP-sugar lipid carrier transferase compare
RR42_RS22135 -1.0 -1.9 cytochrome C compare
RR42_RS07140 -1.0 -1.6 hypothetical protein compare
RR42_RS06785 -1.0 -1.6 hypothetical protein compare
RR42_RS37375 -1.0 -1.6 short-chain dehydrogenase compare
RR42_RS35115 -1.0 -2.7 riboflavin synthase subunit beta compare
RR42_RS16095 -1.0 -5.7 cobalamin-binding protein compare
RR42_RS07870 -1.0 -2.9 alkyl hydroperoxide reductase compare
RR42_RS33210 -1.0 -4.0 teichoic acid biosynthesis protein compare
RR42_RS32710 -1.0 -1.2 hypothetical protein compare
RR42_RS15470 -1.0 -1.6 biopolymer transporter ExbD compare
RR42_RS23565 -0.9 -0.9 flagellar motor switch protein G compare
RR42_RS32520 -0.9 -2.0 cytochrome C compare
RR42_RS15225 -0.9 -1.2 RNA-binding protein compare
RR42_RS00770 -0.9 -5.7 5-methyltetrahydrofolate--homocysteine methyltransferase compare
RR42_RS19445 -0.9 -3.1 TetR family transcriptional regulator compare
RR42_RS18670 -0.9 -2.3 metal-dependent hydrolase compare
RR42_RS30410 -0.9 -1.4 hypothetical protein compare
RR42_RS13465 -0.9 -2.5 phosphate transporter permease subunit PstC compare
RR42_RS36010 -0.9 -2.2 peptidase compare
RR42_RS09300 -0.9 -1.2 aromatic ring-opening dioxygenase LigB compare
RR42_RS13625 -0.9 -2.7 4-hydroxybenzoyl-CoA reductase compare
RR42_RS27290 -0.9 -1.3 hypothetical protein compare
RR42_RS16220 -0.9 -1.0 DNA polymerase III subunit chi compare
RR42_RS33150 -0.9 -2.7 hypothetical protein compare
RR42_RS05075 -0.9 -1.6 aminocarboxymuconate-semialdehyde decarboxylase compare
RR42_RS23205 -0.9 -1.0 hypothetical protein compare
RR42_RS29865 -0.9 -2.1 hypothetical protein compare
RR42_RS04770 -0.9 -1.1 methylglyoxal synthase compare
RR42_RS13880 -0.9 -6.5 AMP-dependent synthetase compare
RR42_RS33240 -0.9 -5.7 GDP-L-fucose synthase compare
RR42_RS08630 -0.9 -2.2 head completion/stabilization protein compare
RR42_RS19085 -0.9 -1.0 cytochrome C biogenesis protein ResB compare
RR42_RS07130 -0.9 -1.7 hypothetical protein compare
RR42_RS23380 -0.9 -2.4 flagellar basal body protein FliL compare
RR42_RS19685 -0.9 -2.0 thiosulfate oxidation carrier complex protein SoxZ compare
RR42_RS36450 -0.9 -1.1 acyl dehydratase compare
RR42_RS34585 -0.9 -1.1 LysR family transcriptional regulator compare
RR42_RS08110 -0.9 -1.6 hypothetical protein compare
RR42_RS13065 -0.9 -5.6 ribonuclease R compare
RR42_RS16495 -0.9 -2.0 branched-chain amino acid aminotransferase compare
RR42_RS17280 -0.9 -4.7 ATP--cobalamin adenosyltransferase compare
RR42_RS19410 -0.9 -3.7 GntR family transcriptional regulator compare
RR42_RS06270 -0.9 -3.8 cupin compare
RR42_RS27125 -0.8 -2.5 polar amino acid ABC transporter permease compare
RR42_RS08590 -0.8 -0.9 baseplate assembly protein compare
RR42_RS15525 -0.8 -1.0 hypothetical protein compare
RR42_RS36360 -0.8 -2.5 pyridine nucleotide-disulfide oxidoreductase compare
RR42_RS09590 -0.8 -1.8 hypothetical protein compare
RR42_RS07920 -0.8 -0.9 cyclophilin-like superfamily protein compare
RR42_RS14055 -0.8 -1.4 elongation factor 4 compare
RR42_RS28400 -0.8 -1.2 CoA-transferase compare
RR42_RS04895 -0.8 -5.0 serine/threonine protein phosphatase compare
RR42_RS32445 -0.8 -1.3 shikimate dehydrogenase compare
RR42_RS10565 -0.8 -2.3 alpha/beta hydrolase compare
RR42_RS18850 -0.8 -2.1 preprotein translocase subunit TatC compare
RR42_RS24820 -0.8 -1.9 hypothetical protein compare
RR42_RS18140 -0.8 -1.1 MarR family transcriptional regulator compare
RR42_RS05360 -0.8 -1.4 membrane protein compare
RR42_RS09555 -0.8 -1.3 universal stress protein UspA compare
RR42_RS04495 -0.8 -2.3 integration host factor subunit beta compare
RR42_RS22890 -0.8 -3.1 TetR family transcriptional regulator compare
RR42_RS25815 -0.8 -3.1 hypothetical protein compare
RR42_RS14985 -0.8 -1.1 30S ribosomal protein S21 compare
RR42_RS17970 -0.8 -1.2 hypothetical protein compare
RR42_RS11770 -0.8 -0.7 cyclase compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source L-Histidine in Cupriavidus basilensis FW507-4G11

For carbon source L-Histidine across organisms