Experiment set1IT039 for Pseudomonas fluorescens SBW25

Compare to:

L-Arabinose carbon source; with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS01645 -7.0 -8.4 S41 family peptidase compare
PFLU_RS14550 -6.5 -4.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS28645 -6.1 -10.2 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS03645 -5.9 -10.6 tetratricopeptide repeat protein compare
PFLU_RS01620 -5.7 -6.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS04465 -5.7 -8.7 ATP phosphoribosyltransferase compare
PFLU_RS07695 -5.5 -3.8 beta-N-acetylhexosaminidase compare
PFLU_RS28535 -5.5 -9.8 dihydroxy-acid dehydratase compare
PFLU_RS04470 -5.4 -9.7 histidinol dehydrogenase compare
PFLU_RS22095 -5.3 -14.5 GTP diphosphokinase compare
PFLU_RS11635 -5.2 -11.6 hypothetical protein compare
PFLU_RS01605 -5.2 -5.0 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS02590 -5.1 -5.0 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS01625 -5.1 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS27370 -4.9 -13.8 anthranilate phosphoribosyltransferase compare
PFLU_RS00180 -4.8 -9.8 tryptophan synthase subunit beta compare
PFLU_RS04715 -4.8 -7.2 D-alanine--D-alanine ligase compare
PFLU_RS20580 -4.8 -11.6 3-isopropylmalate dehydratase large subunit compare
PFLU_RS27440 -4.8 -8.0 nucleotidyltransferase family protein compare
PFLU_RS02490 -4.7 -12.2 phosphoserine phosphatase SerB compare
PFLU_RS11625 -4.7 -10.5 dihydroxy-acid dehydratase compare
PFLU_RS06320 -4.7 -6.4 OmpH family outer membrane protein compare
PFLU_RS26545 -4.7 -9.3 sel1 repeat family protein compare
PFLU_RS25640 -4.7 -11.3 ketol-acid reductoisomerase compare
PFLU_RS27365 -4.7 -10.4 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS24125 -4.6 -7.0 cold-shock protein compare
PFLU_RS22740 -4.6 -3.2 phosphoadenylyl-sulfate reductase compare
PFLU_RS24485 -4.6 -12.1 hypothetical protein compare
PFLU_RS07650 -4.5 -16.2 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS20540 -4.4 -12.8 phosphoribosylanthranilate isomerase compare
PFLU_RS29095 -4.4 -25.5 polyphosphate kinase 1 compare
PFLU_RS26735 -4.2 -8.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS27620 -4.2 -16.3 acyl-CoA dehydrogenase compare
PFLU_RS01900 -4.2 -9.3 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS25715 -4.2 -7.5 RNA polymerase-binding protein DksA compare
PFLU_RS04385 -4.2 -9.3 RNase adapter RapZ compare
PFLU_RS02365 -4.2 -14.4 glycosyltransferase compare
PFLU_RS28655 -4.1 -16.7 HAD family hydrolase compare
PFLU_RS22105 -4.0 -6.1 cysteine synthase CysM compare
PFLU_RS24765 -3.9 -21.5 2-isopropylmalate synthase compare
PFLU_RS24825 -3.9 -4.0 Fe-S cluster assembly protein IscX compare
PFLU_RS25755 -3.9 -2.7 pantoate--beta-alanine ligase compare
PFLU_RS07785 -3.9 -13.5 VacJ family lipoprotein compare
PFLU_RS11640 -3.9 -6.8 aldehyde dehydrogenase (NADP(+)) compare
PFLU_RS20565 -3.8 -16.6 3-isopropylmalate dehydrogenase compare
PFLU_RS12980 -3.8 -9.1 nitrite/sulfite reductase compare
PFLU_RS04430 -3.8 -6.8 ATP-binding cassette domain-containing protein compare
PFLU_RS12975 -3.8 -6.7 DUF934 domain-containing protein compare
PFLU_RS18505 -3.7 -11.9 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS04440 -3.7 -9.4 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS27445 -3.7 -14.1 phosphotransferase compare
PFLU_RS21300 -3.6 -8.5 cysteine hydrolase compare
PFLU_RS28695 -3.6 -6.5 phosphoglycerate dehydrogenase compare
PFLU_RS09055 -3.6 -2.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS01610 -3.6 -12.1 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS04445 -3.6 -8.6 ABC transporter substrate-binding protein compare
PFLU_RS03980 -3.6 -8.0 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFLU_RS20575 -3.5 -5.8 3-isopropylmalate dehydratase small subunit compare
PFLU_RS31560 -3.5 -1.8 hypothetical protein compare
PFLU_RS25735 -3.5 -9.4 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS03770 -3.5 -12.6 sulfate adenylyltransferase subunit CysN compare
PFLU_RS24790 -3.5 -4.7 tetratricopeptide repeat protein compare
PFLU_RS26770 -3.4 -13.1 DedA family protein compare
PFLU_RS08065 -3.4 -9.6 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS07640 -3.4 -12.2 universal stress protein compare
PFLU_RS11630 -3.4 -12.8 MFS transporter compare
PFLU_RS26640 -3.4 -14.2 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS27305 -3.3 -9.4 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS04070 -3.3 -2.3 peptide chain release factor 3 compare
PFLU_RS09980 -3.3 -15.1 peptidase S41 compare
PFLU_RS28390 -3.2 -9.7 methionine biosynthesis protein MetW compare
PFLU_RS30160 -3.1 -3.1 ParB/RepB/Spo0J family partition protein compare
PFLU_RS28165 -3.1 -12.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS18645 -3.1 -2.1 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS18635 -3.1 -3.0 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS08160 -3.1 -6.5 sugar transferase compare
PFLU_RS29515 -3.1 -10.4 RidA family protein compare
PFLU_RS24785 -3.0 -11.1 outer membrane protein assembly factor BamB compare
PFLU_RS04435 -3.0 -5.0 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS20510 -3.0 -15.5 O-succinylhomoserine sulfhydrylase compare
PFLU_RS18620 -3.0 -2.9 NADH-quinone oxidoreductase subunit B compare
PFLU_RS25730 -3.0 -16.9 PAS domain S-box protein compare
PFLU_RS25750 -3.0 -6.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS14820 -2.9 -4.7 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS00175 -2.9 -7.2 tryptophan synthase subunit alpha compare
PFLU_RS28650 -2.9 -6.2 RNA pyrophosphohydrolase compare
PFLU_RS03765 -2.9 -12.8 sulfate adenylyltransferase subunit CysD compare
PFLU_RS04325 -2.9 -15.8 ribonuclease G compare
PFLU_RS14810 -2.8 -3.5 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS13010 -2.8 -7.7 Fe-S biogenesis protein NfuA compare
PFLU_RS18630 -2.8 -1.9 NADH-quinone oxidoreductase subunit NuoE compare
PFLU_RS18625 -2.8 -3.3 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS20625 -2.8 -3.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS21495 -2.8 -4.6 TlpA family protein disulfide reductase compare
PFLU_RS04930 -2.8 -12.8 PhoH family protein compare
PFLU_RS00415 -2.8 -4.2 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS18670 -2.7 -2.6 NADH-quinone oxidoreductase subunit M compare
PFLU_RS18640 -2.7 -5.4 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS31100 -2.7 -5.4 preprotein translocase subunit SecG compare
PFLU_RS31215 -2.7 -3.1 hypothetical protein compare
PFLU_RS27475 -2.7 -4.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS02370 -2.7 -9.4 glycosyltransferase compare
PFLU_RS28965 -2.7 -8.7 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS18655 -2.6 -1.8 NADH-quinone oxidoreductase subunit J compare
PFLU_RS29550 -2.6 -9.5 ATP-dependent DNA helicase RecG compare
PFLU_RS25360 -2.6 -7.5 glutamate 5-kinase compare
PFLU_RS18650 -2.6 -1.7 NADH-quinone oxidoreductase subunit NuoI compare
PFLU_RS01895 -2.5 -3.9 phosphoribosyl-ATP diphosphatase compare
PFLU_RS26595 -2.5 -1.7 lipoprotein compare
PFLU_RS02460 -2.5 -7.5 alpha/beta fold hydrolase compare
PFLU_RS28385 -2.5 -10.4 homoserine O-acetyltransferase compare
PFLU_RS24085 -2.5 -3.8 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS04835 -2.5 -1.2 hypothetical protein compare
PFLU_RS18665 -2.5 -1.7 NADH-quinone oxidoreductase subunit L compare
PFLU_RS18410 -2.4 -4.2 response regulator compare
PFLU_RS08130 -2.4 -1.6 flippase compare
PFLU_RS03610 -2.4 -7.0 redox-regulated ATPase YchF compare
PFLU_RS01485 -2.4 -10.0 cellulase compare
PFLU_RS24090 -2.4 -4.8 Holliday junction branch migration protein RuvA compare
PFLU_RS18675 -2.4 -2.8 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS24025 -2.4 -8.6 quinolinate synthase NadA compare
PFLU_RS18530 -2.3 -4.7 DNA translocase FtsK compare
PFLU_RS03970 -2.3 -8.5 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS05565 -2.3 -2.2 transporter compare
PFLU_RS28755 -2.3 -9.1 ABC transporter permease subunit compare
PFLU_RS28325 -2.3 -9.0 energy transducer TonB compare
PFLU_RS21995 -2.3 -5.8 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS25645 -2.3 -1.6 acetolactate synthase small subunit compare
PFLU_RS02000 -2.3 -14.9 penicillin-binding protein 1A compare
PFLU_RS01585 -2.3 -5.9 oxidative damage protection protein compare
PFLU_RS08165 -2.2 -2.6 acyl carrier protein compare
PFLU_RS04650 -2.2 -12.6 ABC transporter substrate-binding protein compare
PFLU_RS30530 -2.2 -6.3 acetyltransferase compare
PFLU_RS20515 -2.2 -1.5 amidophosphoribosyltransferase compare
PFLU_RS18250 -2.2 -2.9 DUF2160 domain-containing protein compare
PFLU_RS24475 -2.1 -13.3 AmpG family muropeptide MFS transporter compare
PFLU_RS22070 -2.1 -3.2 phosphoribosylglycinamide formyltransferase compare
PFLU_RS12260 -2.1 -2.8 hypothetical protein compare
PFLU_RS12580 -2.1 -8.3 MurR/RpiR family transcriptional regulator compare
PFLU_RS22595 -2.1 -4.6 OmpA family protein compare
PFLU_RS10765 -2.0 -8.6 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS24820 -2.0 -1.4 nucleoside-diphosphate kinase compare
PFLU_RS18615 -2.0 -2.6 NADH-quinone oxidoreductase subunit A compare
PFLU_RS29875 -2.0 -9.4 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS22600 -2.0 -1.4 RNA polymerase sigma factor SigX compare
PFLU_RS28775 -2.0 -10.2 polyamine ABC transporter substrate-binding protein compare
PFLU_RS19170 -2.0 -4.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS25225 -2.0 -8.0 disulfide bond formation protein B compare
PFLU_RS31185 -2.0 -3.6 hypothetical protein compare
PFLU_RS04150 -1.9 -3.8 DUF1043 family protein compare
PFLU_RS23310 -1.9 -8.5 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS29275 -1.9 -4.7 DUF484 family protein compare
PFLU_RS25800 -1.9 -4.4 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS07275 -1.9 -5.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS28765 -1.9 -8.9 polyamine ABC transporter ATP-binding protein compare
PFLU_RS06440 -1.9 -1.3 dCTP deaminase compare
PFLU_RS07810 -1.8 -10.7 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS05570 -1.8 -1.8 EamA family transporter compare
PFLU_RS23305 -1.8 -7.7 arginine N-succinyltransferase compare
PFLU_RS19860 -1.8 -1.3 hypothetical protein compare
PFLU_RS29880 -1.8 -8.7 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS28760 -1.8 -8.9 ABC transporter permease subunit compare
PFLU_RS20520 -1.8 -6.4 colicin V production protein CvpA compare
PFLU_RS08155 -1.8 -4.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS00465 -1.8 -7.7 spore maturation protein compare
PFLU_RS29735 -1.8 -8.7 HlyC/CorC family transporter compare
PFLU_RS14500 -1.8 -2.7 hypothetical protein compare
PFLU_RS28690 -1.8 -8.6 FAD-binding oxidoreductase compare
PFLU_RS04220 -1.8 -6.3 FadR family transcriptional regulator compare
PFLU_RS13365 -1.8 -1.5 hypothetical protein compare
PFLU_RS23185 -1.8 -8.3 protein-glutamate O-methyltransferase CheR compare
PFLU_RS07665 -1.7 -1.7 type I DNA topoisomerase compare
PFLU_RS13540 -1.7 -3.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS30165 -1.7 -7.1 ParA family protein compare
PFLU_RS29750 -1.7 -5.2 phosphate signaling complex protein PhoU compare
PFLU_RS19175 -1.7 -6.5 trigger factor compare
PFLU_RS20960 -1.7 -4.1 hypothetical protein compare
PFLU_RS24205 -1.7 -2.7 DNA binding protein compare
PFLU_RS28725 -1.7 -8.4 DUF2059 domain-containing protein compare
PFLU_RS02280 -1.7 -8.4 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
PFLU_RS24550 -1.7 -1.1 homoserine dehydrogenase compare
PFLU_RS28955 -1.7 -7.4 TIGR02449 family protein compare
PFLU_RS28785 -1.7 -8.0 glutamine synthetase compare
PFLU_RS02115 -1.6 -2.3 outer membrane lipoprotein carrier protein LolA compare
PFLU_RS05250 -1.6 -5.2 elongation factor 4 compare
PFLU_RS29490 -1.6 -5.4 ribonuclease PH compare
PFLU_RS21645 -1.6 -5.8 chemotaxis protein CheA compare
PFLU_RS18395 -1.6 -2.2 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS30615 -1.6 -2.6 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
PFLU_RS03015 -1.6 -1.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH compare
PFLU_RS29885 -1.6 -6.7 LysR family transcriptional regulator compare
PFLU_RS12210 -1.6 -1.3 hypothetical protein compare
PFLU_RS13815 -1.6 -1.6 hypothetical protein compare
PFLU_RS25585 -1.6 -2.1 exodeoxyribonuclease V subunit alpha compare
PFLU_RS05210 -1.6 -1.3 HU family DNA-binding protein compare
PFLU_RS08340 -1.6 -8.2 transcription elongation factor GreB compare
PFLU_RS01315 -1.6 -1.8 Hsp33 family molecular chaperone HslO compare
PFLU_RS05585 -1.6 -5.4 MtnX-like HAD-IB family phosphatase compare
PFLU_RS21060 -1.5 -4.3 TetR/AcrR family transcriptional regulator compare
PFLU_RS19165 -1.5 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25 in carbon source experiments

For carbon source L-Arabinose across organisms