| | gene | name | fitness | t score | description | |
|---|
| b3341 | rpsG | +2.2 | 4.8 | 30S ribosomal protein S7 (NCBI) | compare |
| b3753 | rbsR | +2.2 | 16.3 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b2741 | rpoS | +2.1 | 11.2 | RNA polymerase sigma factor (NCBI) | compare |
| b1422 | ydcI | +1.8 | 8.2 | putative transcriptional regulator LYSR-type (VIMSS) | conserved |
| b4373 | rimI | +1.7 | 5.2 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b3199 | yrbK | +1.6 | 5.5 | hypothetical protein (NCBI) | compare |
| b1085 | b1085 | +1.4 | 3.4 | orf, hypothetical protein (VIMSS) | compare |
| b1824 | yobF | +1.4 | 6.3 | hypothetical protein (NCBI) | compare |
| b3929 | rraA | +1.4 | 8.3 | ribonuclease activity regulator protein RraA (NCBI) | compare |
| b1823 | cspC | +1.4 | 3.1 | stress protein, member of the CspA-family (NCBI) | compare |
| b0240 | crl | +1.4 | 6.8 | DNA-binding transcriptional regulator (NCBI) | compare |
| b4450 | arcZ | +1.3 | 2.8 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b1095 | fabF | +1.2 | 8.0 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b2229 | b2229 | +1.2 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b2314 | dedD | +1.2 | 4.9 | putative lipoprotein (VIMSS) | compare |
| b3261 | fis | +1.1 | 4.1 | DNA-binding protein Fis (NCBI) | compare |
| b0232 | yafN | +1.1 | 1.7 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b0920 | ycbC | +1.1 | 5.0 | conserved inner membrane protein (NCBI) | compare |
| b4172 | hfq | +1.1 | 2.7 | RNA-binding protein Hfq (NCBI) | compare |
| b4000 | hupA | +1.0 | 6.1 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b2784 | relA | +1.0 | 7.9 | (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) | compare |
| b3229 | sspA | +1.0 | 5.0 | stringent starvation protein A (NCBI) | compare |
| b2829 | ptsP | +1.0 | 7.6 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b2007 | yeeX | +1.0 | 2.4 | conserved protein (RefSeq) | compare |
| b0382 | yaiB | +1.0 | 6.4 | hypothetical protein (NCBI) | compare |
| b2446 | yffO | +1.0 | 2.5 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b2058 | wcaB | +1.0 | 1.3 | predicted acyl transferase (NCBI) | compare |
| b4071 | nrfB | +0.9 | 1.9 | formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS) | compare |
| b1066 | rimJ | +0.9 | 4.6 | ribosomal-protein-S5-alanine N-acetyltransferase (NCBI) | compare |
| b0059 | hepA | +0.9 | 7.0 | ATP-dependent helicase HepA (NCBI) | compare |
| b3494 | yhiO | +0.9 | 4.3 | universal stress protein UspB (NCBI) | compare |
| b2317 | dedA | +0.9 | 2.6 | conserved inner membrane protein (NCBI) | compare |
| b3740 | gidB | +0.8 | 5.7 | glucose-inhibited division protein B (NCBI) | compare |
| b0015 | dnaJ | +0.8 | 5.3 | chaperone Hsp40, co-chaperone with DnaK (NCBI) | compare |
| b3933 | ftsN | +0.8 | 6.4 | essential cell division protein (NCBI) | compare |
| b1332 | ynaJ | +0.8 | 1.8 | predicted inner membrane protein (NCBI) | compare |
| b4627 | ykfL | +0.8 | 3.6 | no description | compare |
| b1725 | yniA | +0.8 | 3.7 | predicted phosphotransferase/kinase (NCBI) | compare |
| b3752 | rbsK | +0.8 | 4.0 | ribokinase (NCBI) | compare |
| b3181 | greA | +0.8 | 3.4 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b4406 | yaeP | +0.8 | 1.5 | hypothetical protein (NCBI) | compare |
| b3636 | rpmG | +0.8 | 1.9 | 50S ribosomal protein L33 (NCBI) | compare |
| b0014 | dnaK | +0.8 | 2.0 | molecular chaperone DnaK (NCBI) | compare |
| b2814 | metZ | +0.8 | 1.5 | tRNA-Met (NCBI) | compare |
| b1104 | ycfL | +0.8 | 2.4 | hypothetical protein (NCBI) | compare |
| b1667 | ydhR | +0.7 | 2.4 | hypothetical protein (NCBI) | compare |
| b1400 | paaY | +0.7 | 1.9 | predicted hexapeptide repeat acetyltransferase (NCBI) | compare |
| b4049 | dusA | +0.7 | 5.1 | tRNA-dihydrouridine synthase A (RefSeq) | compare |
| b2911 | ssrS | +0.7 | 1.5 | 6S regulatory RNA (NCBI) | compare |
| b3183 | obgE | +0.7 | 1.8 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b2377 | yfdY | +0.7 | 2.5 | predicted inner membrane protein (NCBI) | compare |
| b3133 | agaV | +0.7 | 2.4 | PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA) (VIMSS) | compare |
| b3157 | yhbT | +0.7 | 2.8 | predicted lipid carrier protein (NCBI) | compare |
| b0784 | moaD | +0.7 | 2.5 | molybdopterin synthase, small subunit (NCBI) | compare |
| b1831 | proQ | +0.7 | 1.7 | putative solute/DNA competence effector (NCBI) | compare |
| b0051 | ksgA | +0.7 | 3.5 | dimethyladenosine transferase (NCBI) | compare |
| b1959 | yedA | +0.7 | 2.8 | predicted inner membrane protein (NCBI) | compare |
| b0050 | apaG | +0.7 | 4.0 | hypothetical protein (NCBI) | compare |
| b0955 | ycbZ | +0.7 | 4.0 | predicted peptidase (NCBI) | compare |
| b1222 | narX | +0.7 | 3.1 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b0765 | modC | +0.7 | 2.7 | molybdate transporter subunit (NCBI) | compare |
| b0191 | yaeJ | +0.7 | 2.2 | hypothetical protein (NCBI) | compare |
| b1148 | ymfM | +0.7 | 2.2 | e14 prophage; predicted protein (NCBI) | compare |
| b3769 | ilvM | +0.7 | 2.3 | acetolactate synthase II, small subunit (NCBI) | compare |
| b3644 | yicC | +0.7 | 3.1 | hypothetical protein (NCBI) | compare |
| b1944 | fliL | +0.6 | 3.4 | flagellar basal body-associated protein FliL (NCBI) | compare |
| b1960 | vsr | +0.6 | 2.6 | DNA mismatch endonuclease of very short patch repair (NCBI) | compare |
| b0953 | rmf | +0.6 | 1.9 | ribosome modulation factor (NCBI) | compare |
| b1399 | paaX | +0.6 | 1.9 | DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive (NCBI) | compare |
| b2183 | rsuA | +0.6 | 2.5 | 16S rRNA pseudouridylate 516 synthase (NCBI) | compare |
| b2435 | amiA | +0.6 | 2.4 | N-acetylmuramoyl-l-alanine amidase I (NCBI) | compare |
| b4402 | yjjY | +0.6 | 0.9 | hypothetical protein (NCBI) | compare |
| b4568 | ytjA | +0.6 | 1.3 | predicted protein (RefSeq) | compare |
| b3198 | kdsC | +0.6 | 1.7 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b4570 | lomR | +0.6 | 1.2 | no description | compare |
| b2393 | nupC | +0.6 | 3.6 | nucleoside (except guanosine) transporter (NCBI) | compare |
| b0549 | ybcO | +0.6 | 1.7 | DLP12 prophage; predicted protein (NCBI) | compare |
| b1841 | yobA | +0.6 | 1.0 | hypothetical protein (NCBI) | compare |
| b0225 | yafQ | +0.6 | 2.4 | predicted toxin of the YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b0643 | ybeL | +0.6 | 3.4 | hypothetical protein (NCBI) | compare |
| b0503 | ybbB | +0.6 | 1.4 | tRNA 2-selenouridine synthase, selenophosphate-dependent (NCBI) | compare |
| b1758 | b1758 | +0.6 | 0.9 | putative cytochrome oxidase (VIMSS) | compare |
| b1143 | ymfI | +0.6 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b4546 | ypeB | +0.6 | 0.9 | hypothetical protein (NCBI) | compare |
| b0018 | mokC | +0.6 | 0.9 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b1380 | ldhA | +0.6 | 1.0 | D-lactate dehydrogenase (NCBI) | compare |
| b2576 | srmB | +0.6 | 2.6 | ATP-dependent RNA helicase (NCBI) | compare |
| b4578 | insP | +0.6 | 1.9 | no description | compare |
| b2666 | yqaE | +0.6 | 1.4 | predicted membrane protein (NCBI) | compare |
| b4458 | oxyS | +0.6 | 0.8 | global regulatory RNA (NCBI) | compare |
| b0852 | rimK | +0.6 | 2.4 | ribosomal protein S6 modification protein (NCBI) | compare |
| b0082 | mraW | +0.6 | 2.3 | S-adenosyl-methyltransferase (NCBI) | compare |
| b1518 | lsrG | +0.6 | 1.5 | autoinducer-2 (AI-2) modifying protein LsrG (NCBI) | compare |
| b4390 | nadR | +0.6 | 4.1 | probable nadAB transcriptional regulator (VIMSS) | compare |
| b1757 | b1757 | +0.6 | 2.2 | putative thiosulfate sulfur transferase (VIMSS) | compare |
| b4294 | insA-7 | +0.6 | 1.1 | KpLE2 phage-like element; IS1 repressor protein InsA (NCBI) | compare |
| b4653 | yicT | +0.6 | 1.6 | no description | compare |
| b4443 | gcvB | +0.6 | 1.1 | GcvB sRNA gene divergent from gcvA (RefSeq) | compare |
| b2910 | zapA | +0.6 | 2.0 | protein that localizes to the cytokinetic ring (NCBI) | compare |
| b4371 | rsmC | +0.6 | 2.8 | 16S ribosomal RNA m2G1207 methyltransferase (NCBI) | compare |
| b2051 | wcaH | +0.5 | 0.9 | GDP-mannose mannosyl hydrolase (VIMSS) | compare |
| b1640 | ydhH | +0.5 | 1.6 | anhydro-N-acetylmuramic acid kinase (NCBI) | compare |
| b0865 | ybjP | +0.5 | 2.2 | predicted lipoprotein (NCBI) | compare |
| b2823 | ppdC | +0.5 | 2.1 | hypothetical protein (NCBI) | compare |
| b4477 | dgoA | +0.5 | 2.6 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (NCBI) | compare |
| b2080 | b2080 | +0.5 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1512 | lsrR | +0.5 | 2.2 | lsr operon transcriptional repressor (NCBI) | compare |
| b2209 | eco | +0.5 | 1.6 | ecotin precursor (NCBI) | compare |
| b1329 | b1329 | +0.5 | 3.4 | putative transport periplasmic protein (VIMSS) | compare |
| b1200 | b1200 | +0.5 | 3.0 | putative dihydroxyacetone kinase (EC 2.7.1.2) (VIMSS) | compare |
| b2262 | menB | +0.5 | 0.9 | naphthoate synthase (NCBI) | compare |
| b4595 | yciY | +0.5 | 1.3 | hypothetical protein (RefSeq) | compare |
| b0785 | moaE | +0.5 | 2.3 | molybdopterin synthase, large subunit (NCBI) | compare |
| b2291 | yfbR | +0.5 | 2.1 | hypothetical protein (NCBI) | compare |
| b1523 | yneG | +0.5 | 1.5 | hypothetical protein (NCBI) | compare |
| b3119 | tdcR | +0.5 | 1.6 | threonine dehydratase operon activator protein (VIMSS) | compare |
| b1847 | yebF | +0.5 | 1.1 | predicted protein (RefSeq) | compare |
| b3238 | yhcN | +0.5 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1259 | yciG | +0.5 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1698 | ydiR | +0.5 | 2.1 | predicted electron transfer flavoprotein, FAD-binding (NCBI) | compare |
| b4631 | ykgQ | +0.5 | 1.0 | no description | compare |
| b0790 | ybhP | +0.5 | 2.9 | predicted DNase (NCBI) | compare |
| b1566 | flxA | +0.5 | 2.4 | Qin prophage; predicted protein (NCBI) | compare |
| b3500 | gor | +0.5 | 0.8 | glutathione reductase (NCBI) | compare |
| b0866 | ybjQ | +0.5 | 0.7 | hypothetical protein (NCBI) | compare |
| b2915 | yqfE | +0.5 | 1.3 | hypothetical protein (RefSeq) | compare |
| b1074 | flgC | +0.5 | 1.0 | flagellar basal-body rod protein C (NCBI) | compare |
| b0870 | ltaE | +0.5 | 1.3 | L-allo-threonine aldolase, PLP-dependent (NCBI) | compare |
| b2042 | galF | +0.5 | 3.4 | predicted subunit with GalU (NCBI) | compare |
| b1914 | uvrY | +0.5 | 2.3 | response regulator (NCBI) | compare |
| b4174 | hflK | +0.5 | 3.7 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b2809 | b2809 | +0.5 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b4097 | phnK | +0.5 | 1.5 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b2141 | yohJ | +0.5 | 1.8 | hypothetical protein (NCBI) | compare |
| b2012 | yeeD | +0.5 | 1.8 | hypothetical protein (NCBI) | compare |
| b2123 | yehR | +0.5 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b1253 | yciA | +0.5 | 1.2 | predicted hydrolase (NCBI) | compare |
| b4695 | ykgT | +0.5 | 0.7 | no description | compare |
| b1918 | yecS | +0.5 | 1.2 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b2535 | csiE | +0.5 | 3.8 | orf, hypothetical protein (VIMSS) | compare |
| b0607 | uspG | +0.5 | 2.6 | universal stress protein UP12 (NCBI) | compare |
| b1822 | rrmA | +0.5 | 1.4 | 23S rRNA m1G745 methyltransferase (NCBI) | compare |
| b0967 | yccW | +0.5 | 2.7 | predicted methyltransferase (RefSeq) | compare |
| b1223 | narK | +0.5 | 2.2 | nitrate/nitrite transporter (NCBI) | compare |
| b4511 | ybdZ | +0.5 | 1.8 | hypothetical protein (NCBI) | compare |
| b0610 | rnk | +0.5 | 1.6 | nucleoside diphosphate kinase regulator (NCBI) | compare |
| b2944 | sprT | +0.5 | 2.0 | hypothetical protein (NCBI) | compare |
| b1475 | fdnH | +0.5 | 2.6 | formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible (NCBI) | compare |
| b2959 | yggL | +0.5 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b4195 | ulaC | +0.5 | 1.9 | L-ascorbate-specific enzyme IIA component of PTS (NCBI) | compare |
| b2101 | yegW | +0.5 | 1.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2004 | yeeU | +0.5 | 1.7 | CP4-44 prophage; antitoxin of the YeeV-YeeU toxin-antitoxin system (NCBI) | compare |
| b4675 | yoaJ | +0.5 | 1.6 | expressed protein (RefSeq) | compare |
| b2571 | rseB | +0.5 | 2.9 | periplasmic negative regulator of sigmaE (NCBI) | compare |
| b1686 | ydiI | +0.5 | 1.7 | hypothetical protein (NCBI) | compare |
| b4699 | fnrS | +0.5 | 0.7 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b2905 | gcvT | +0.5 | 3.0 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b1648 | b1648 | +0.5 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b2904 | gcvH | +0.4 | 1.5 | glycine cleavage system protein H (NCBI) | compare |
| b1343 | dbpA | +0.4 | 2.1 | ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) | compare |
| b1838 | pphA | +0.4 | 2.5 | protein phosphatase 1 modulates phosphoproteins, signals protein misfolding (VIMSS) | compare |
| b2811 | ygdK | +0.4 | 1.7 | predicted Fe-S metabolism protein (NCBI) | compare |
| b1926 | fliT | +0.4 | 1.7 | predicted chaperone (NCBI) | compare |
| b2057 | wcaC | +0.4 | 1.6 | predicted glycosyl transferase (NCBI) | compare |
| b2704 | srlB | +0.4 | 1.6 | glucitol/sorbitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b0487 | cueR | +0.4 | 2.0 | DNA-binding transcriptional activator of copper-responsive regulon genes (NCBI) | compare |
| b1743 | spy | +0.4 | 1.2 | envelope stress induced periplasmic protein (NCBI) | compare |
| b1372 | b1372 | +0.4 | 2.2 | putative membrane protein (VIMSS) | compare |
| b3095 | yqjA | +0.4 | 2.5 | conserved inner membrane protein (NCBI) | compare |
| b1802 | yeaW | +0.4 | 2.2 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b3206 | npr | +0.4 | 1.8 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b2448 | yffQ | +0.4 | 2.1 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b1562 | hokD | +0.4 | 1.1 | Qin prophage; small toxic polypeptide (NCBI) | compare |
| b1548 | nohA | +0.4 | 1.1 | Qin prophage; predicted packaging protein (RefSeq) | compare |
| b4548 | ypjJ | +0.4 | 2.1 | hypothetical protein (NCBI) | compare |
| b4175 | hflC | +0.4 | 3.0 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b1067 | yceH | +0.4 | 1.1 | hypothetical protein (NCBI) | compare |
| b3718 | yieK | +0.4 | 1.9 | hypothetical protein (NCBI) | compare |
| b0458 | ylaC | +0.4 | 2.6 | orf, hypothetical protein (VIMSS) | compare |
| b1848 | yebG | +0.4 | 0.6 | conserved protein regulated by LexA (NCBI) | compare |
| b3888 | yiiD | +0.4 | 3.0 | predicted acetyltransferase (NCBI) | compare |
| b2151 | galS | +0.4 | 2.0 | DNA-binding transcriptional repressor (NCBI) | compare |
| b2597 | yfiA | +0.4 | 0.8 | cold shock protein associated with 30S ribosomal subunit (NCBI) | compare |
| b0550 | rusA | +0.4 | 1.2 | DLP12 prophage; endonuclease RUS (NCBI) | compare |
| b1191 | b1191 | +0.4 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b0468 | ybaN | +0.4 | 1.8 | conserved inner membrane protein (NCBI) | compare |
| b4545 | ypdJ | +0.4 | 1.5 | no description | compare |
| b2510 | b2510 | +0.4 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b2786 | barA | +0.4 | 3.8 | hybrid sensory histidine kinase, in two-component regulatory system with UvrY (NCBI) | compare |
| b2199 | ccmC | +0.4 | 1.7 | heme exporter subunit (NCBI) | compare |
| b2474 | ypfI | +0.4 | 2.9 | predicted hydrolase (NCBI) | compare |
| b1842 | holE | +0.4 | 1.0 | DNA polymerase III, theta subunit (NCBI) | compare |
| b3778 | rep | +0.4 | 2.9 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b2248 | yfaX | +0.4 | 1.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4515 | ybgT | +0.4 | 0.7 | hypothetical protein (NCBI) | compare |
| b3293 | yhdN | +0.4 | 1.4 | hypothetical protein (NCBI) | compare |
| b4609 | ryfD | +0.4 | 1.3 | Novel sRNA, function unknown (RefSeq) | compare |
| b2665 | ygaU | +0.4 | 1.3 | hypothetical protein (NCBI) | compare |
| b0711 | ybgJ | +0.4 | 1.9 | predicted enzyme subunit (NCBI) | compare |
| b3248 | yhdE | +0.4 | 2.8 | Maf-like protein (NCBI) | compare |