Experiment set1IT022 for Burkholderia phytofirmans PsJN

Compare to:

L-Proline carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS16270 -8.2 -5.7 phosphoglycerate kinase compare
BPHYT_RS06555 -8.0 -5.5 ketol-acid reductoisomerase compare
BPHYT_RS33915 -8.0 -5.5 isopropylmalate isomerase compare
BPHYT_RS17685 -7.9 -7.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS09500 -7.7 -5.3 glucose-6-phosphate isomerase compare
BPHYT_RS18320 -7.2 -12.0 orotate phosphoribosyltransferase compare
BPHYT_RS17395 -7.1 -2.8 anthranilate synthase subunit II compare
BPHYT_RS33875 -7.1 -9.8 tryptophan synthase subunit alpha compare
BPHYT_RS04955 -7.1 -2.8 methionyl-tRNA synthetase compare
BPHYT_RS16835 -7.0 -6.8 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS02610 -6.9 -6.3 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS14915 -6.9 -9.2 phosphoserine aminotransferase compare
BPHYT_RS33900 -6.9 -12.3 3-isopropylmalate dehydrogenase compare
BPHYT_RS33880 -6.6 -6.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS03150 -6.5 -11.8 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS15915 -6.5 -8.9 ornithine carbamoyltransferase compare
BPHYT_RS14895 -6.5 -4.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS08955 -6.4 -4.4 homoserine dehydrogenase compare
BPHYT_RS17690 -6.3 -7.9 imidazole glycerol phosphate synthase compare
BPHYT_RS33835 -6.3 -10.7 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS17890 -6.2 -4.2 shikimate kinase compare
BPHYT_RS14910 -6.1 -10.7 chorismate mutase compare
BPHYT_RS14845 -6.0 -4.2 cysteine synthase compare
BPHYT_RS17680 -6.0 -6.2 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS09515 -5.9 -5.8 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS17670 -5.9 -7.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS17675 -5.9 -3.3 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS16245 -5.9 -8.7 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS06545 -5.9 -13.1 acetolactate synthase compare
BPHYT_RS17885 -5.9 -8.0 3-dehydroquinate synthase compare
BPHYT_RS12530 -5.7 -7.1 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS16710 -5.6 -2.2 LysR family transcriptional regulator compare
BPHYT_RS14190 -5.6 -11.3 carbamoyl phosphate synthase large subunit compare
BPHYT_RS19355 -5.5 -23.4 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase conserved
BPHYT_RS12055 -5.5 -15.3 phosphoenolpyruvate synthase compare
BPHYT_RS08850 -5.5 -3.7 transcriptional regulator compare
BPHYT_RS15920 -5.4 -13.2 argininosuccinate synthase compare
BPHYT_RS33645 -5.4 -5.2 homoserine kinase compare
BPHYT_RS04725 -5.3 -9.1 sulfite reductase compare
BPHYT_RS06610 -5.2 -2.9 triosephosphate isomerase compare
BPHYT_RS12845 -5.1 -16.7 ATPase compare
BPHYT_RS17405 -5.1 -2.0 indole-3-glycerol phosphate synthase compare
BPHYT_RS10100 -5.0 -7.7 dihydroxy-acid dehydratase compare
BPHYT_RS15605 -5.0 -14.4 ABC transporter permease compare
BPHYT_RS16905 -5.0 -6.2 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS33840 -4.9 -6.3 amidophosphoribosyltransferase compare
BPHYT_RS17400 -4.9 -5.9 anthranilate phosphoribosyltransferase compare
BPHYT_RS02590 -4.8 -8.9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS04740 -4.8 -8.7 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS13705 -4.8 -6.5 chorismate synthase compare
BPHYT_RS03640 -4.8 -4.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS12985 -4.8 -4.4 amino acid acetyltransferase compare
BPHYT_RS06900 -4.8 -5.9 aspartate aminotransferase compare
BPHYT_RS16255 -4.8 -4.6 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS04720 -4.7 -10.0 transcriptional regulator compare
BPHYT_RS03535 -4.7 -9.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS15600 -4.7 -11.9 ABC transporter ATP-binding protein compare
BPHYT_RS17715 -4.6 -7.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS17390 -4.5 -12.1 anthranilate synthase subunit I compare
BPHYT_RS33865 -4.5 -10.5 tryptophan synthase alpha chain compare
BPHYT_RS01595 -4.5 -8.8 homoserine O-acetyltransferase compare
BPHYT_RS16675 -4.5 -3.1 dihydroorotase compare
BPHYT_RS14865 -4.4 -4.2 UDP-glucose 6-dehydrogenase compare
BPHYT_RS15590 -4.2 -4.6 amino acid ABC transporter ATPase compare
BPHYT_RS06405 -4.2 -6.0 phosphoribosylamine--glycine ligase compare
BPHYT_RS03725 -4.2 -2.6 serine hydroxymethyltransferase compare
BPHYT_RS15595 -4.0 -13.5 ABC transporter conserved
BPHYT_RS16840 -4.0 -3.9 transketolase compare
BPHYT_RS08960 -3.9 -3.3 threonine synthase compare
BPHYT_RS17380 -3.9 -11.4 ribulose-phosphate 3-epimerase compare
BPHYT_RS08565 -3.8 -1.9 dihydroorotate dehydrogenase compare
BPHYT_RS03645 -3.7 -4.0 tRNA dimethylallyltransferase compare
BPHYT_RS13220 -3.7 -8.7 phosphomethylpyrimidine synthase compare
BPHYT_RS12465 -3.6 -4.4 inositol monophosphatase compare
BPHYT_RS15670 -3.6 -9.0 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS15415 -3.4 -17.3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS12840 -3.4 -6.1 pyruvate dehydrogenase compare
BPHYT_RS18705 -3.1 -3.1 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS04745 -3.1 -3.9 sulfate adenylyltransferase compare
BPHYT_RS17700 -3.0 -3.6 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS04730 -3.0 -4.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS15620 -3.0 -4.3 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS04965 -2.8 -10.1 ATP-binding protein compare
BPHYT_RS17530 -2.8 -5.4 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS15610 -2.7 -9.9 branched-chain amino acid ABC transporter substrate-binding protein conserved
BPHYT_RS14900 -2.6 -3.9 prephenate dehydrogenase compare
BPHYT_RS06175 -2.6 -6.7 LPS biosynthesis compare
BPHYT_RS23840 -2.5 -5.3 methyltransferase compare
BPHYT_RS17520 -2.5 -7.3 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS04290 -2.5 -3.6 glycosyl transferase family 2 compare
BPHYT_RS03625 -2.4 -9.4 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS06685 -2.1 -3.5 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS05960 -2.0 -11.0 endoribonuclease L-PSP compare
BPHYT_RS36275 -2.0 -3.2 hypothetical protein compare
BPHYT_RS01590 -1.9 -8.8 methionine biosynthesis protein MetW compare
BPHYT_RS14195 -1.9 -2.5 carbamoyl phosphate synthase small subunit compare
BPHYT_RS14855 -1.9 -1.4 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS01485 -1.8 -1.7 histidine kinase compare
BPHYT_RS04820 -1.8 -8.3 LysR family transcriptional regulator compare
BPHYT_RS08950 -1.8 -4.0 aminotransferase compare
BPHYT_RS02860 -1.8 -1.6 membrane protein compare
BPHYT_RS24315 -1.7 -2.4 phosphoribosyltransferase compare
BPHYT_RS18340 -1.7 -1.8 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS01455 -1.7 -1.4 peptide deformylase compare
BPHYT_RS13645 -1.7 -12.1 threonine--tRNA ligase compare
BPHYT_RS33580 -1.6 -5.1 geranyltranstransferase compare
BPHYT_RS33850 -1.6 -2.1 sporulation protein compare
BPHYT_RS03495 -1.6 -2.3 hypothetical protein compare
BPHYT_RS27175 -1.5 -1.4 DNA-binding protein compare
BPHYT_RS03400 -1.5 -1.4 ATP-dependent DNA helicase RecG compare
BPHYT_RS12615 -1.5 -2.1 dihydrodipicolinate synthase compare
BPHYT_RS02540 -1.5 -2.2 hypothetical protein compare
BPHYT_RS17095 -1.5 -4.1 proline--tRNA ligase compare
BPHYT_RS04095 -1.4 -1.7 SAM-dependent methyltransferase PhcB compare
BPHYT_RS25470 -1.4 -1.9 alkylhydroperoxidase compare
BPHYT_RS15075 -1.4 -2.0 dihydrokaempferol 4-reductase compare
BPHYT_RS06530 -1.3 -2.1 membrane protein compare
BPHYT_RS06375 -1.3 -6.3 ribonuclease compare
BPHYT_RS17525 -1.3 -1.3 glutaredoxin compare
BPHYT_RS04370 -1.3 -2.4 glycosyl transferase compare
BPHYT_RS21645 -1.2 -3.7 LysR family transcriptional regulator compare
BPHYT_RS35885 -1.2 -5.6 hypothetical protein compare
BPHYT_RS26300 -1.2 -2.7 ATP-dependent DNA ligase compare
BPHYT_RS04385 -1.2 -3.4 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS17920 -1.2 -1.7 protein CyaY compare
BPHYT_RS17035 -1.2 -2.6 sugar kinase compare
BPHYT_RS04920 -1.2 -3.7 aspartate 1-decarboxylase compare
BPHYT_RS05610 -1.2 -7.4 DNA-cytosine methyltransferase compare
BPHYT_RS15305 -1.2 -5.5 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS04285 -1.1 -1.5 rhamnosyltransferase compare
BPHYT_RS09280 -1.1 -1.3 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS18590 -1.1 -1.1 hypothetical protein compare
BPHYT_RS31910 -1.1 -2.0 hypothetical protein compare
BPHYT_RS04890 -1.1 -1.6 cobalamin biosynthesis protein CobD compare
BPHYT_RS07540 -1.0 -1.2 hypothetical protein compare
BPHYT_RS23230 -1.0 -1.2 histidine kinase compare
BPHYT_RS00325 -1.0 -2.1 hypothetical protein compare
BPHYT_RS02865 -1.0 -2.0 hypothetical protein compare
BPHYT_RS15615 -1.0 -3.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS13605 -1.0 -1.0 tRNA-Pro compare
BPHYT_RS00815 -1.0 -1.2 hypothetical protein compare
BPHYT_RS08335 -1.0 -1.4 hypothetical protein compare
BPHYT_RS00205 -1.0 -2.1 DeoR family transcriptional regulator compare
BPHYT_RS31205 -1.0 -2.1 peptide ABC transporter ATP-binding protein compare
BPHYT_RS20790 -1.0 -1.6 TetR family transcriptional regulator compare
BPHYT_RS26675 -0.9 -2.1 precorrin-6Y C5,15-methyltransferase compare
BPHYT_RS06990 -0.9 -1.3 membrane protein compare
BPHYT_RS06190 -0.9 -2.5 heptosyltransferase compare
BPHYT_RS08235 -0.9 -1.2 nucleoprotein, Hfg, host factor I compare
BPHYT_RS17100 -0.9 -4.1 RNA pyrophosphohydrolase compare
BPHYT_RS02880 -0.9 -1.3 ATP-dependent protease compare
BPHYT_RS16975 -0.9 -5.1 shikimate 5-dehydrogenase compare
BPHYT_RS16880 -0.9 -1.6 malic enzyme compare
BPHYT_RS10065 -0.9 -1.0 cytochrome C oxidase subunit I compare
BPHYT_RS06345 -0.9 -4.7 sensor histidine kinase compare
BPHYT_RS03570 -0.9 -4.2 heat-inducible transcription repressor HrcA compare
BPHYT_RS14920 -0.9 -1.6 hypothetical protein compare
BPHYT_RS13470 -0.9 -1.0 arylsulfate sulfotransferase compare
BPHYT_RS29255 -0.9 -2.4 aspartate carbamoyltransferase compare
BPHYT_RS23570 -0.9 -3.5 chemotaxis protein CheY compare
BPHYT_RS03410 -0.8 -2.1 queuine tRNA-ribosyltransferase compare
BPHYT_RS28040 -0.8 -1.8 acyl-CoA dehydrogenase compare
BPHYT_RS12990 -0.8 -2.5 iron transporter compare
BPHYT_RS09385 -0.8 -1.0 FAD-dependent oxidoreductase compare
BPHYT_RS32395 -0.8 -1.2 hypothetical protein compare
BPHYT_RS18760 -0.8 -1.7 flagellar biosynthesis protein FliT compare
BPHYT_RS20155 -0.8 -1.2 hypothetical protein compare
BPHYT_RS14945 -0.8 -3.2 phosphoglycolate phosphatase compare
BPHYT_RS06325 -0.8 -2.7 ATPase compare
BPHYT_RS33385 -0.8 -1.3 major facilitator superfamily protein compare
BPHYT_RS09525 -0.8 -2.3 toxin HipA compare
BPHYT_RS02710 -0.8 -0.8 hypothetical protein compare
BPHYT_RS08245 -0.8 -5.0 anti-sigma factor compare
BPHYT_RS30185 -0.8 -2.3 DNA-directed RNA polymerase subunit alpha compare
BPHYT_RS10095 -0.7 -1.4 integrase compare
BPHYT_RS26680 -0.7 -2.5 oxidoreductase compare
BPHYT_RS33885 -0.7 -5.1 tRNA pseudouridine synthase A compare
BPHYT_RS27395 -0.7 -1.6 N-acetyltransferase GCN5 compare
BPHYT_RS12455 -0.7 -4.2 serine O-acetyltransferase compare
BPHYT_RS20425 -0.7 -2.1 hypothetical protein compare
BPHYT_RS12785 -0.7 -2.8 Rrf2 family transcriptional regulator compare
BPHYT_RS27005 -0.7 -1.3 RNA polymerase sigma54 factor compare
BPHYT_RS12060 -0.7 -1.3 hypothetical protein compare
BPHYT_RS11125 -0.7 -1.3 alkylhydroperoxidase compare
BPHYT_RS28850 -0.7 -1.1 hypothetical protein compare
BPHYT_RS32750 -0.7 -1.2 lipoprotein compare
BPHYT_RS03325 -0.7 -1.4 hypothetical protein compare
BPHYT_RS27090 -0.7 -1.7 aldo/keto reductase compare
BPHYT_RS18600 -0.7 -1.4 glutathione S-transferase compare
BPHYT_RS28075 -0.7 -0.9 cytochrome B561 compare
BPHYT_RS08665 -0.7 -1.0 hypothetical protein compare
BPHYT_RS06550 -0.7 -1.3 acetolactate synthase compare
BPHYT_RS23445 -0.7 -1.1 hexuronate transporter compare
BPHYT_RS02600 -0.7 -1.7 glutaredoxin compare
BPHYT_RS02725 -0.7 -1.5 GntR family transcriptional regulator compare
BPHYT_RS06600 -0.7 -1.3 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS17490 -0.7 -1.8 haloacid dehalogenase compare
BPHYT_RS03090 -0.7 -0.8 hypothetical protein compare
BPHYT_RS31050 -0.7 -1.0 epimerase compare
BPHYT_RS04595 -0.7 -1.8 cytoplasmic protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source L-Proline in Burkholderia phytofirmans PsJN

For carbon source L-Proline across organisms