Experiment set1IT020 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A control

200 most detrimental genes:

  gene name fitness t score description  
LRK54_RS04965 +1.7 14.8 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
LRK54_RS04160 +1.5 7.8 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
LRK54_RS02900 +1.5 14.1 C40 family peptidase compare
LRK54_RS15015 +1.3 9.6 Ppx/GppA family phosphatase compare
LRK54_RS05485 +1.3 12.4 serine hydrolase compare
LRK54_RS14500 +1.3 11.8 GldG family protein compare
LRK54_RS01035 +1.2 10.9 tRNA pseudouridine(55) synthase TruB compare
LRK54_RS09215 +1.2 11.0 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS14490 +1.1 3.8 ABC transporter ATP-binding protein compare
LRK54_RS08680 +1.1 9.7 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
LRK54_RS06490 +1.1 9.7 D-alanyl-D-alanine carboxypeptidase compare
LRK54_RS14495 +1.0 9.3 ABC transporter permease subunit compare
LRK54_RS11745 +1.0 7.9 ribonuclease PH compare
LRK54_RS15170 +0.9 8.2 FKBP-type peptidyl-prolyl cis-trans isomerase compare
LRK54_RS12015 +0.9 8.4 HAMP domain-containing histidine kinase compare
LRK54_RS07125 +0.9 8.4 cytochrome c oxidase subunit II compare
LRK54_RS07060 +0.9 7.0 DedA family protein compare
LRK54_RS05110 +0.9 1.4 glycosyltransferase family 4 protein compare
LRK54_RS04085 +0.8 7.1 HAMP domain-containing histidine kinase compare
LRK54_RS03985 +0.8 6.0 TIGR00266 family protein compare
LRK54_RS01160 +0.8 6.9 endolytic transglycosylase MltG compare
LRK54_RS15930 +0.8 6.4 class I SAM-dependent methyltransferase compare
LRK54_RS05020 +0.8 7.0 sigma-54 dependent transcriptional regulator compare
LRK54_RS12165 +0.7 7.0 nucleoside permease compare
LRK54_RS06530 +0.7 7.1 carbohydrate kinase family protein compare
LRK54_RS10920 +0.7 7.0 DEAD/DEAH box helicase compare
LRK54_RS05440 +0.7 5.7 hypothetical protein compare
LRK54_RS12980 +0.7 5.7 hypothetical protein compare
LRK54_RS03035 +0.7 5.6 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK54_RS05990 +0.7 4.8 hypothetical protein compare
LRK54_RS04285 +0.7 6.4 kinase compare
LRK54_RS07195 +0.7 1.6 hypothetical protein compare
LRK54_RS07180 +0.7 3.0 dethiobiotin synthase compare
LRK54_RS02975 +0.7 5.9 alpha/beta fold hydrolase compare
LRK54_RS12985 +0.7 4.7 inorganic phosphate transporter compare
LRK54_RS12010 +0.7 5.0 response regulator transcription factor compare
LRK54_RS13010 +0.7 5.5 LacI family DNA-binding transcriptional regulator compare
LRK54_RS10500 +0.7 3.1 glycerophosphodiester phosphodiesterase compare
LRK54_RS03040 +0.6 3.3 MtnX-like HAD-IB family phosphatase compare
LRK54_RS00935 +0.6 5.3 sulfite exporter TauE/SafE family protein compare
LRK54_RS13330 +0.6 4.1 hypothetical protein compare
LRK54_RS11585 +0.6 5.9 cAMP-activated global transcriptional regulator CRP compare
LRK54_RS16760 +0.6 5.2 transglycosylase SLT domain-containing protein compare
LRK54_RS16575 +0.6 6.1 GGDEF domain-containing phosphodiesterase compare
LRK54_RS04820 +0.6 0.7 GspH/FimT family pseudopilin compare
LRK54_RS11115 +0.6 6.1 TonB-dependent receptor compare
LRK54_RS10790 +0.6 4.3 AI-2E family transporter compare
LRK54_RS15025 +0.6 3.3 phosphate regulon sensor histidine kinase PhoR compare
LRK54_RS06225 +0.6 2.5 hypothetical protein compare
LRK54_RS04705 +0.6 5.7 DMT family transporter compare
LRK54_RS08385 +0.6 1.5 GntR family transcriptional regulator compare
LRK54_RS07805 +0.6 5.3 insulinase family protein compare
LRK54_RS17830 +0.6 1.4 mercury resistance system periplasmic binding protein MerP compare
LRK54_RS10120 +0.6 5.7 glycosyltransferase family 39 protein compare
LRK54_RS04255 +0.6 4.6 type IV pilus twitching motility protein PilT compare
LRK54_RS15065 +0.6 5.4 aspartyl/asparaginyl beta-hydroxylase domain-containing protein compare
LRK54_RS15215 +0.6 3.3 DUF2059 domain-containing protein compare
LRK54_RS17130 +0.6 3.5 IMPACT family protein compare
LRK54_RS00980 +0.6 4.7 DnaJ domain-containing protein compare
LRK54_RS00915 +0.6 4.0 LysR substrate-binding domain-containing protein compare
LRK54_RS13350 +0.5 3.2 hypothetical protein compare
LRK54_RS12515 +0.5 4.8 hypothetical protein compare
LRK54_RS13080 +0.5 4.9 TonB-dependent receptor compare
LRK54_RS03015 +0.5 4.5 beta-ketoacyl-[acyl-carrier-protein] synthase family protein compare
LRK54_RS13005 +0.5 4.9 sugar porter family MFS transporter compare
LRK54_RS15010 +0.5 4.0 peptidylprolyl isomerase compare
LRK54_RS08425 +0.5 4.5 response regulator transcription factor compare
LRK54_RS11120 +0.5 4.9 tetratricopeptide repeat-containing sulfotransferase family protein compare
LRK54_RS16945 +0.5 2.5 sigma-E factor negative regulatory protein compare
LRK54_RS14480 +0.5 2.9 response regulator transcription factor compare
LRK54_RS16285 +0.5 2.0 hypothetical protein compare
LRK54_RS14485 +0.5 4.7 polyketide cyclase compare
LRK54_RS04990 +0.5 4.8 HAMP domain-containing histidine kinase compare
LRK54_RS10145 +0.5 3.4 DNA-processing protein DprA compare
LRK54_RS05995 +0.5 4.5 tRNA dihydrouridine(20/20a) synthase DusA compare
LRK54_RS08430 +0.5 4.7 hybrid sensor histidine kinase/response regulator compare
LRK54_RS16990 +0.5 3.4 hypothetical protein compare
LRK54_RS13045 +0.5 4.3 MFS transporter compare
LRK54_RS14595 +0.5 2.5 alpha/beta hydrolase compare
LRK54_RS17400 +0.5 1.5 hypothetical protein compare
LRK54_RS14995 +0.5 3.1 carbon storage regulator CsrA compare
LRK54_RS12030 +0.5 3.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
LRK54_RS15030 +0.5 3.6 phosphate regulon transcriptional regulator PhoB compare
LRK54_RS07230 +0.5 3.9 endonuclease/exonuclease/phosphatase family protein compare
LRK54_RS15695 +0.5 2.5 hypothetical protein compare
LRK54_RS17890 +0.4 2.9 Rne/Rng family ribonuclease compare
LRK54_RS06240 +0.4 1.2 hypothetical protein compare
LRK54_RS15365 +0.4 1.2 hypothetical protein compare
LRK54_RS11870 +0.4 3.3 DUF4381 domain-containing protein compare
LRK54_RS15360 +0.4 2.1 arginase family protein compare
LRK54_RS00520 +0.4 4.1 aminomethyl-transferring glycine dehydrogenase compare
LRK54_RS02475 +0.4 3.9 TRZ/ATZ family hydrolase compare
LRK54_RS12105 +0.4 2.0 sigma-54 dependent transcriptional regulator compare
LRK54_RS08505 +0.4 3.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
LRK54_RS11880 +0.4 3.8 VWA domain-containing protein compare
LRK54_RS00975 +0.4 2.4 twitching motility response regulator PilH compare
LRK54_RS05500 +0.4 1.5 hypothetical protein compare
LRK54_RS00435 +0.4 3.7 tRNA 2-thiouridine(34) synthase MnmA compare
LRK54_RS03730 +0.4 1.6 acylphosphatase compare
LRK54_RS02095 +0.4 3.9 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS08025 +0.4 1.7 NAD(P)-dependent oxidoreductase compare
LRK54_RS11230 +0.4 1.1 universal stress protein compare
LRK54_RS18070 +0.4 3.8 FAD-binding oxidoreductase compare
LRK54_RS10190 +0.4 3.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
LRK54_RS12875 +0.4 3.2 RNA polymerase factor sigma-54 compare
LRK54_RS11885 +0.4 3.7 BatD family protein compare
LRK54_RS06750 +0.4 3.8 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
LRK54_RS04395 +0.4 3.4 sigma-54 dependent transcriptional regulator compare
LRK54_RS09980 +0.4 2.3 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
LRK54_RS01700 +0.4 2.6 tRNA pseudouridine(38-40) synthase TruA compare
LRK54_RS10360 +0.4 1.7 homoserine kinase compare
LRK54_RS01280 +0.4 0.9 MBL fold metallo-hydrolase compare
LRK54_RS16305 +0.4 2.9 nuclear transport factor 2 family protein compare
LRK54_RS01385 +0.4 2.9 metalloregulator ArsR/SmtB family transcription factor compare
LRK54_RS01885 +0.4 2.8 peptidylprolyl isomerase compare
LRK54_RS03700 +0.4 1.6 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase compare
LRK54_RS13505 +0.4 2.2 flagellar assembly protein FliH compare
LRK54_RS00940 +0.4 3.2 cupin domain-containing protein compare
LRK54_RS10085 +0.4 3.4 CDP-glycerol glycerophosphotransferase family protein compare
LRK54_RS05795 +0.4 3.3 azurin compare
LRK54_RS11965 +0.4 2.8 Rieske 2Fe-2S domain-containing protein compare
LRK54_RS05585 +0.4 3.5 DegT/DnrJ/EryC1/StrS family aminotransferase compare
LRK54_RS14805 +0.4 3.1 tRNA threonylcarbamoyladenosine dehydratase compare
LRK54_RS10540 +0.4 1.1 BlaI/MecI/CopY family transcriptional regulator compare
LRK54_RS09385 +0.4 1.4 DUF3363 domain-containing protein compare
LRK54_RS04590 +0.4 1.4 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
LRK54_RS06030 +0.4 1.9 phage baseplate assembly protein V compare
LRK54_RS02725 +0.4 1.4 OsmC family protein compare
LRK54_RS05695 +0.4 1.6 host attachment protein compare
LRK54_RS07290 +0.4 0.6 VanZ family protein compare
LRK54_RS15500 +0.4 1.4 hypothetical protein compare
LRK54_RS12850 +0.4 2.1 HPr family phosphocarrier protein compare
LRK54_RS10845 +0.4 2.5 50S ribosomal protein L33 compare
LRK54_RS04385 +0.4 3.2 ATP-binding protein compare
LRK54_RS16765 +0.4 2.9 hydroxyacylglutathione hydrolase compare
LRK54_RS15735 +0.4 2.3 MarR family transcriptional regulator compare
LRK54_RS11875 +0.4 3.1 VWA domain-containing protein compare
LRK54_RS05595 +0.4 3.3 WxcM-like domain-containing protein compare
LRK54_RS12280 +0.4 3.2 M23 family metallopeptidase compare
LRK54_RS13445 +0.4 2.0 flagellar assembly peptidoglycan hydrolase FlgJ compare
LRK54_RS00495 +0.4 3.1 ribonuclease R compare
LRK54_RS13105 +0.4 1.9 FHA domain-containing protein compare
LRK54_RS00480 +0.3 2.2 quaternary ammonium compound efflux SMR transporter SugE compare
LRK54_RS17180 +0.3 2.9 aldehyde dehydrogenase family protein compare
LRK54_RS01275 +0.3 2.1 tRNA-Ser compare
LRK54_RS07800 +0.3 3.0 insulinase family protein compare
LRK54_RS18105 +0.3 1.3 DNA oxidative demethylase AlkB compare
LRK54_RS11700 +0.3 1.6 cytochrome bd-I oxidase subunit CydX compare
LRK54_RS07175 +0.3 2.2 hypothetical protein compare
LRK54_RS00715 +0.3 3.2 propionate--CoA ligase compare
LRK54_RS02375 +0.3 2.1 glutamate 5-kinase compare
LRK54_RS07330 +0.3 2.8 hypothetical protein compare
LRK54_RS02690 +0.3 2.0 GNAT family N-acetyltransferase compare
LRK54_RS11860 +0.3 2.2 MoxR family ATPase compare
LRK54_RS17245 +0.3 2.7 HD domain-containing protein compare
LRK54_RS10530 +0.3 3.1 S9 family peptidase compare
LRK54_RS06215 +0.3 1.7 YciI family protein compare
LRK54_RS12915 +0.3 1.9 hypothetical protein compare
LRK54_RS02100 +0.3 3.0 multidrug efflux RND transporter permease subunit compare
LRK54_RS00575 +0.3 0.8 hypothetical protein compare
LRK54_RS11865 +0.3 2.1 DUF58 domain-containing protein compare
LRK54_RS02585 +0.3 2.2 Rid family hydrolase compare
LRK54_RS06235 +0.3 2.6 murein L,D-transpeptidase catalytic domain family protein compare
LRK54_RS16640 +0.3 1.8 tRNA pseudouridine(13) synthase TruD compare
LRK54_RS06285 +0.3 2.0 hypothetical protein compare
LRK54_RS06920 +0.3 2.5 class I SAM-dependent rRNA methyltransferase compare
LRK54_RS00070 +0.3 2.9 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
LRK54_RS05915 +0.3 1.5 hypothetical protein compare
LRK54_RS13430 +0.3 2.0 flagellar basal-body rod protein FlgG compare
LRK54_RS10780 +0.3 2.8 hypothetical protein compare
LRK54_RS06420 +0.3 0.4 hypothetical protein compare
LRK54_RS07540 +0.3 1.2 DUF2878 domain-containing protein compare
LRK54_RS18025 +0.3 2.2 acyl-CoA-binding protein compare
LRK54_RS10270 +0.3 1.2 ComF family protein compare
LRK54_RS07255 +0.3 2.7 sulfotransferase compare
LRK54_RS17565 +0.3 2.7 TolC family protein compare
LRK54_RS11900 +0.3 1.9 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS17195 +0.3 2.7 acetyl-CoA hydrolase compare
LRK54_RS04185 +0.3 0.8 chemotaxis protein CheW compare
LRK54_RS05055 +0.3 2.7 L-fucose:H+ symporter permease compare
LRK54_RS13050 +0.3 2.8 hypothetical protein compare
LRK54_RS05315 +0.3 1.6 cysteine synthase A compare
LRK54_RS14915 +0.3 1.9 response regulator compare
LRK54_RS13540 +0.3 0.5 flagellar biosynthetic protein FliO compare
LRK54_RS01750 +0.3 2.8 transglycosylase SLT domain-containing protein compare
LRK54_RS13620 +0.3 0.7 hypothetical protein compare
LRK54_RS08420 +0.3 2.8 acetate--CoA ligase compare
LRK54_RS08350 +0.3 2.6 glutathione S-transferase family protein compare
LRK54_RS11845 +0.3 2.6 type 4a pilus biogenesis protein PilO compare
LRK54_RS05105 +0.3 2.4 class I SAM-dependent methyltransferase compare
LRK54_RS05850 +0.3 2.7 4-hydroxyphenylpyruvate dioxygenase compare
LRK54_RS07185 +0.3 1.9 hypothetical protein compare
LRK54_RS00740 +0.3 1.8 peptidylprolyl isomerase compare
LRK54_RS00685 +0.3 2.2 hypothetical protein compare
LRK54_RS03330 +0.3 2.5 TlpA family protein disulfide reductase compare
LRK54_RS09545 +0.3 2.0 hypothetical protein compare
LRK54_RS05010 +0.3 2.6 MFS transporter compare
LRK54_RS11750 +0.3 1.2 YicC family protein compare
LRK54_RS01660 +0.3 1.6 DUF4399 domain-containing protein compare
LRK54_RS04490 +0.3 2.0 CoA transferase subunit A compare


Specific Phenotypes

None in this experiment

For Rhodanobacter denitrificans FW104-10B01 in r2a_control experiments