Experiment set1IT017 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Carbenicillin disodium salt 250 ug/ml

200 most important genes:

  gene name fitness t score description  
Psyr_1544 -4.3 -3.0 SirA-like protein compare
Psyr_4009 -4.3 -7.1 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_4008 -4.3 -16.6 Hydrophobe/amphiphile efflux-1 HAE1 compare
Psyr_0951 -4.2 -4.0 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_1614 -3.8 -3.7 lipid A biosynthesis acyltransferase compare
Psyr_4340 -3.8 -5.7 phosphomethylpyrimidine kinase, putative compare
Psyr_4341 -3.8 -7.6 thiamine-phosphate diphosphorylase compare
Psyr_4007 -3.7 -12.0 Secretion protein HlyD compare
Psyr_4740 -3.7 -6.1 thiazole-phosphate synthase compare
Psyr_1613 -3.6 -4.3 septum site-determining protein MinC compare
Psyr_3295 -3.5 -10.9 SLT conserved
Psyr_1268 -3.5 -7.1 extracellular solute-binding protein, family 3:SLT compare
Psyr_4566 -3.2 -9.0 Peptidase M23B compare
Psyr_0014 -3.0 -4.1 lipid A biosynthesis acyltransferase compare
Psyr_4686 -3.0 -4.9 8-amino-7-oxononanoate synthase compare
Psyr_4683 -2.9 -4.3 dethiobiotin synthase compare
Psyr_4158 -2.9 -7.8 conserved hypothetical protein compare
Psyr_3008 -2.8 -6.2 Undecaprenyl-diphosphatase compare
Psyr_1930 -2.7 -4.7 hypothetical protein compare
Psyr_1556 -2.7 -3.0 hypothetical protein compare
Psyr_3808 -2.6 -2.3 hypothetical protein compare
Psyr_4687 -2.6 -5.6 biotin synthase compare
Psyr_0918 -2.5 -11.4 ABC transporter compare
Psyr_0454 -2.4 -3.9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_0849 -2.4 -11.3 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_4091 -2.4 -6.3 8-oxo-dGTPase compare
Psyr_0565 -2.4 -6.7 Protein of unknown function UPF0126 compare
Psyr_1751 -2.4 -5.8 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_4362 -2.3 -3.1 Rare lipoprotein A compare
Psyr_3954 -2.3 -5.8 GTP-binding protein LepA compare
Psyr_0917 -2.2 -8.7 ABC-2 compare
Psyr_1373 -2.1 -2.8 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_2347 -2.1 -4.0 hypothetical protein compare
Psyr_4684 -2.1 -3.2 biotin synthesis protein BioC compare
Psyr_1410 -2.1 -5.2 Holliday junction DNA helicase RuvB compare
Psyr_0475 -2.0 -3.4 Protein of unknown function YGGT compare
Psyr_4361 -1.9 -3.9 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_4203 -1.9 -2.4 SsrA-binding protein compare
Psyr_1907 -1.8 -3.6 GTP cyclohydrolase I compare
Psyr_0303 -1.7 -3.0 Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein compare
Psyr_0464 -1.7 -2.6 hypothetical protein compare
Psyr_4581 -1.6 -2.5 anthranilate synthase, component II compare
Psyr_4118 -1.6 -5.8 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_2854 -1.6 -5.0 conserved hypothetical protein compare
Psyr_4940 -1.6 -2.0 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_0574 -1.6 -4.8 protease FtsH subunit HflK compare
Psyr_4143 -1.6 -2.9 HAD-superfamily hydrolase, subfamily IIIA:Phosphatase YrbI compare
Psyr_1555 -1.6 -3.5 Cobyrinic acid a,c-diamide synthase compare
Psyr_3198 -1.5 -2.2 NADH dehydrogenase subunit B compare
Psyr_1418 -1.5 -3.2 Radical SAM compare
Psyr_4884 -1.5 -5.0 Rhodanese-like protein compare
Psyr_2112 -1.5 -2.0 Protein with unknown function DUF469 compare
Psyr_0487 -1.5 -2.6 glutathione synthase compare
Psyr_2095 -1.5 -4.3 Conserved TM helix compare
Psyr_0383 -1.4 -2.2 Twin-arginine translocation protein TatB compare
Psyr_0630 -1.4 -6.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
Psyr_3581 -1.4 -5.2 ribosomal large subunit pseudouridine synthase B compare
Psyr_3547 -1.4 -3.1 transcriptional regulator, TetR family compare
Psyr_3208 -1.4 -1.7 NADH dehydrogenase subunit M compare
Psyr_3691 -1.4 -5.6 conserved hypothetical protein compare
Psyr_0259 -1.4 -3.0 Osmolarity sensor protein envZ compare
Psyr_4115 -1.3 -2.2 phosphoheptose isomerase compare
Psyr_1251 -1.3 -3.3 quinoprotein compare
Psyr_4920 -1.3 -2.0 conserved hypothetical bacteriophage protein compare
Psyr_0826 -1.3 -5.0 glucose-6-phosphate isomerase compare
Psyr_2346 -1.3 -4.6 conserved hypothetical protein compare
Psyr_1371 -1.3 -5.8 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_4100 -1.3 -4.4 D-alanine--D-alanine ligase compare
Psyr_0571 -1.3 -2.9 tRNA isopentenyltransferase compare
Psyr_1543 -1.3 -6.6 Peptidase M48, Ste24p compare
Psyr_2823 -1.3 -2.0 hypothetical protein compare
Psyr_1408 -1.2 -2.0 Holliday junction endonuclease RuvC compare
Psyr_1650 -1.2 -2.9 aminodeoxychorismate lyase apoprotein compare
Psyr_0927 -1.2 -2.7 hypothetical protein compare
Psyr_4627 -1.2 -1.9 dimethyladenosine transferase compare
Psyr_3005 -1.2 -1.8 3-oxoadipate enol-lactonase compare
Psyr_2980 -1.2 -2.9 UDP-glucose pyrophosphorylase compare
Psyr_2855 -1.2 -2.8 methionine synthase (B12-independent) compare
Psyr_5067 -1.2 -4.1 conserved hypothetical protein compare
Psyr_1748 -1.2 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_3179 -1.2 -2.3 DNA translocase FtsK compare
Psyr_4754 -1.1 -1.4 16S rRNA m(2)G-966 methyltransferase compare
Psyr_0529 -1.1 -2.7 Glycosyl transferase, group 1 compare
Psyr_1247 -1.1 -1.8 conserved hypothetical protein compare
Psyr_0579 -1.1 -7.1 RNAse R compare
Psyr_0528 -1.1 -2.0 Carbamoyltransferase compare
Psyr_3905 -1.1 -5.1 glycerol kinase compare
Psyr_0575 -1.1 -2.8 protease FtsH subunit HflC compare
Psyr_5132 -1.1 -2.1 Glucose-inhibited division protein A subfamily compare
Psyr_3293 -1.1 -2.0 UspA compare
Psyr_4622 -1.1 -3.0 Nucleotidyl transferase compare
Psyr_3341 -1.1 -3.3 hypothetical protein compare
Psyr_1895 -1.0 -2.2 conserved hypothetical protein compare
Psyr_3199 -1.0 -2.1 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_0033 -1.0 -3.2 tryptophan synthase, alpha chain compare
Psyr_2848 -1.0 -3.1 hypothetical protein compare
Psyr_2462 -1.0 -3.9 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_5133 -1.0 -2.4 tRNA modification GTPase trmE compare
Psyr_2071 -1.0 -0.8 outer membrane lipoprotein OprI compare
Psyr_1780 -1.0 -2.4 transcriptional regulator, TetR family compare
Psyr_0376 -1.0 -2.8 D-tyrosyl-tRNA(Tyr) deacylase compare
Psyr_4089 -1.0 -3.9 PAS compare
Psyr_3567 -1.0 -1.9 L-arginine ABC transporter ATP-binding protein / L-ornithine ABC transporter ATP-binding protein compare
Psyr_3377 -1.0 -2.2 transcriptional regulator, MarR family compare
Psyr_0941 -1.0 -4.7 Conserved hypothetical protein 92 compare
Psyr_1783 -1.0 -2.3 CDS compare
Psyr_4116 -1.0 -2.0 Transport-associated protein compare
Psyr_5036 -1.0 -2.3 Response regulator receiver compare
Psyr_1530 -1.0 -1.9 hypothetical protein compare
Psyr_1910 -1.0 -3.5 VacJ-like lipoprotein compare
Psyr_4893 -1.0 -1.7 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_5130 -1.0 -5.2 chromosome segregation ATPase compare
Psyr_4112 -1.0 -5.1 Protein of unknown function UPF0011 compare
Psyr_0215 -1.0 -6.0 Exodeoxyribonuclease III xth compare
Psyr_3854 -0.9 -1.1 OmpA/MotB compare
Psyr_2196 -0.9 -2.1 Urease accessory protein UreG compare
Psyr_1949 -0.9 -3.0 ABC-3 compare
Psyr_3419 -0.9 -3.0 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_1935 -0.9 -3.7 Protein of unknown function DUF796 compare
Psyr_2488 -0.9 -1.5 hypothetical protein compare
Psyr_2642 -0.9 -3.4 hypothetical protein compare
Psyr_1747 -0.9 -2.8 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_1667 -0.9 -3.1 Colicin V production protein compare
Psyr_4019 -0.9 -3.1 H-NS family protein MvaT compare
Psyr_4424 -0.9 -4.4 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_3728 -0.9 -3.9 hypothetical protein compare
Psyr_2080 -0.9 -3.9 aminodeoxychorismate synthase, subunit I compare
Psyr_3681 -0.9 -1.2 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
Psyr_4093 -0.9 -3.3 glutamate N-acetyltransferase compare
Psyr_4991 -0.9 -1.5 hypothetical protein compare
Psyr_4460 -0.9 -1.2 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_3014 -0.9 -2.3 protoporphyrin IX magnesium-chelatase compare
Psyr_1749 -0.9 -3.9 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_4015 -0.9 -1.8 conserved domain protein compare
Psyr_1227 -0.9 -2.0 Queuosine biosynthesis protein compare
Psyr_4843 -0.9 -3.5 NUDIX hydrolase compare
Psyr_3809 -0.9 -2.9 hypothetical protein compare
Psyr_2899 -0.9 -3.0 conserved hypothetical protein compare
Psyr_1097 -0.9 -1.8 glycine cleavage system H protein compare
Psyr_0356 -0.9 -1.4 L-cystine ABC transporter ATP-binding protein / Diaminopimelate ABC transporter ATP-binding protein compare
Psyr_0531 -0.9 -1.4 LmbE-like protein compare
Psyr_2084 -0.9 -2.7 transcriptional regulator, GntR family compare
Psyr_5135 -0.8 -0.7 Protein of unknown function DUF37 compare
Psyr_4408 -0.8 -4.4 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_0580 -0.8 -2.1 23S rRNA Gm-2251 2'-O-methyltransferase compare
Psyr_RNA78 -0.8 -3.0 5S ribosomal RNA compare
Psyr_1864 -0.8 -2.5 spermidine synthase compare
Psyr_4144 -0.8 -1.1 Protein of unknown function DUF1239 compare
Psyr_0369 -0.8 -3.0 lipoprotein, putative compare
Psyr_2419 -0.8 -2.9 Protein of unknown function DUF480 compare
Psyr_2594 -0.8 -1.5 unknown conserved protein in bacilli compare
Psyr_1934 -0.8 -2.9 conserved hypothetical protein compare
Psyr_2802 -0.8 -2.1 lipoprotein, putative compare
Psyr_3058 -0.8 -2.5 Amidase compare
Psyr_0954 -0.8 -1.6 Protein of unknown function UPF0153 compare
Psyr_2894 -0.8 -1.5 conserved hypothetical protein compare
Psyr_2243 -0.8 -2.2 Endoribonuclease L-PSP compare
Psyr_1984 -0.8 -2.5 3-isopropylmalate dehydratase, small subunit compare
Psyr_0832 -0.8 -4.1 Two-component sensor kinase CbrA compare
Psyr_1417 -0.7 -3.3 TPR repeat protein compare
Psyr_1487 -0.7 -2.2 conserved hypothetical protein compare
Psyr_0986 -0.7 -2.0 16S rRNA m(2)G 1207 methyltransferase compare
Psyr_0524 -0.7 -1.8 Lipopolysaccharide kinase compare
Psyr_1462 -0.7 -2.9 GCN5-related N-acetyltransferase compare
Psyr_2767 -0.7 -1.9 Glycoside hydrolase, family 19 compare
Psyr_2595 -0.7 -3.0 Dimethylmenaquinone methyltransferase compare
Psyr_4316 -0.7 -2.2 conserved hypothetical protein compare
Psyr_3675 -0.7 -1.7 adenosylcobinamide kinase compare
Psyr_4658 -0.7 -1.4 CDS compare
Psyr_1955 -0.7 -1.7 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_4967 -0.7 -2.3 conserved hypothetical protein compare
Psyr_1852 -0.7 -1.4 conserved hypothetical protein compare
Psyr_3791 -0.7 -1.7 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal compare
Psyr_4512 -0.7 -2.7 putative phage-related protein compare
Psyr_RNA61 -0.7 -2.1 tRNA-Gly compare
Psyr_3089 -0.7 -5.5 Hemolysin-type calcium-binding region:hemolysin-type calcium binding related protein compare
Psyr_1108 -0.7 -4.3 glyceraldehyde-3-phosphate dehydrogenase compare
Psyr_2842 -0.7 -3.5 hypothetical protein compare
Psyr_0202 -0.7 -4.0 transcriptional regulator, LysR family compare
Psyr_1688 -0.7 -1.4 Protein of unknown function DUF1315 compare
Psyr_4407 -0.7 -1.7 phosphoribosylamine--glycine ligase compare
Psyr_3862 -0.7 -2.5 conserved hypothetical protein compare
Psyr_0735 -0.7 -1.5 Peptidase S24, S26A and S26B compare
Psyr_2641 -0.7 -1.9 hypothetical protein compare
Psyr_0976 -0.7 -2.3 Malate:quinone-oxidoreductase compare
Psyr_2514 -0.7 -2.5 ABC transporter compare
Psyr_4476 -0.7 -3.0 dTDP-4-dehydrorhamnose reductase compare
Psyr_1791 -0.7 -1.4 HAD-superfamily hydrolase, subfamily IA, variant 2 compare
Psyr_2651 -0.7 -3.4 conserved hypothetical protein compare
Psyr_5129 -0.7 -2.2 chromosome segregation DNA-binding protein compare
Psyr_4141 -0.7 -2.7 ABC transporter compare
Psyr_4455 -0.7 -1.5 conserved hypothetical protein compare
Psyr_1424 -0.7 -1.5 Peptidase S24, S26A and S26B compare
Psyr_5065 -0.7 -3.4 ATP-dependent DNA helicase UvrD compare
Psyr_0511 -0.7 -2.2 conserved hypothetical protein compare
Psyr_2546 -0.7 -1.9 DMT superfamily multiple drug (quaternary ammonium compounds) efflux pump compare
Psyr_0066 -0.7 -4.0 bifunctional spore maturation protein, fused SpmA/SpmB compare
Psyr_2182 -0.7 -2.9 hypothetical protein compare
Psyr_2664 -0.7 -3.3 hypothetical protein compare
Psyr_2977 -0.7 -1.6 cointegrate resolution protein T compare


Specific Phenotypes

For 2 genes in this experiment

For stress Carbenicillin disodium salt in Pseudomonas syringae pv. syringae B728a

For stress Carbenicillin disodium salt across organisms