Experiment set1IT014 for Enterobacter asburiae PDN3

Compare to:

Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

200 most detrimental genes:

  gene name fitness t score description  
EX28DRAFT_1590 +2.4 2.2 hypothetical protein compare
EX28DRAFT_1021 +1.8 3.0 Protein of unknown function (DUF2474) compare
EX28DRAFT_2037 +1.6 2.3 DMSO reductase, iron-sulfur subunit compare
EX28DRAFT_0901 +1.3 1.2 hypothetical protein compare
EX28DRAFT_0611 +1.3 8.4 Flagellar hook-length control protein compare
EX28DRAFT_0613 +1.2 6.6 flagellar protein export ATPase FliI compare
EX28DRAFT_0180 +1.2 2.3 Peroxiredoxin compare
EX28DRAFT_0601 +1.1 2.4 Protein of unknown function (DUF2525) compare
EX28DRAFT_0614 +1.1 4.2 Flagellar biosynthesis/type III secretory pathway protein compare
EX28DRAFT_0612 +1.1 4.1 flagellar export protein FliJ compare
EX28DRAFT_1909 +1.1 1.6 Protein of unknown function (DUF3574) compare
EX28DRAFT_2425 +1.1 1.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4269 +1.1 1.2 SOS regulatory protein LexA compare
EX28DRAFT_3315 +1.0 1.1 Protein of unknown function (DUF2556) compare
EX28DRAFT_1438 +1.0 2.1 Transcriptional regulators compare
EX28DRAFT_2753 +1.0 2.1 Rhodanese-related sulfurtransferase compare
EX28DRAFT_4534 +1.0 1.7 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
EX28DRAFT_1851 +1.0 6.6 flagellar rod assembly protein/muramidase FlgJ compare
EX28DRAFT_0725 +1.0 1.3 Activator of osmoprotectant transporter ProP compare
EX28DRAFT_1853 +1.0 5.5 Flagellar basal body L-ring protein compare
EX28DRAFT_0141 +1.0 1.0 hypothetical protein compare
EX28DRAFT_2627 +0.9 3.5 Phosphoglycerate dehydrogenase and related dehydrogenases compare
EX28DRAFT_1855 +0.9 6.4 flagellar hook-basal body protein compare
EX28DRAFT_2448 +0.9 4.3 P pilus assembly protein, pilin FimA compare
EX28DRAFT_1167 +0.9 0.8 Uncharacterized conserved protein compare
EX28DRAFT_0680 +0.9 6.3 flagellar biosynthetic protein FlhB compare
EX28DRAFT_0625 +0.9 4.4 RNA polymerase sigma factor, FliA/WhiG family compare
EX28DRAFT_0254 +0.8 1.4 hypothetical protein compare
EX28DRAFT_1742 +0.8 1.6 PTS system, lactose/cellobiose family IIB component compare
EX28DRAFT_1716 +0.8 3.1 ABC-type cobalamin transport system, ATPase component compare
EX28DRAFT_2708 +0.8 1.3 Protein of unknown function (DUF2946) compare
EX28DRAFT_0616 +0.8 4.9 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
EX28DRAFT_0895 +0.8 2.3 Phage small terminase subunit compare
EX28DRAFT_4065 +0.8 3.1 Universal stress protein UspA and related nucleotide-binding proteins compare
EX28DRAFT_1856 +0.8 5.6 flagellar hook-basal body protein compare
EX28DRAFT_0848 +0.8 1.0 two component transcriptional regulator, LuxR family compare
EX28DRAFT_1858 +0.8 3.7 flagellar basal-body rod protein FlgC compare
EX28DRAFT_3956 +0.8 1.5 hypothetical protein compare
EX28DRAFT_0609 +0.8 4.6 flagellar motor switch protein FliM compare
EX28DRAFT_1038 +0.8 1.5 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1857 +0.8 3.7 Flagellar hook capping protein compare
EX28DRAFT_3508 +0.8 1.3 Lactoylglutathione lyase and related lyases compare
EX28DRAFT_0681 +0.7 5.5 flagellar biosynthesis protein FlhA compare
EX28DRAFT_2407 +0.7 2.7 hypothetical protein compare
EX28DRAFT_1917 +0.7 2.1 pyrimidine utilization protein D compare
EX28DRAFT_3973 +0.7 2.5 Molecular chaperone (small heat shock protein) compare
EX28DRAFT_3024 +0.7 1.8 oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain compare
EX28DRAFT_0792 +0.7 2.4 type VI secretion-associated protein, ImpA family compare
EX28DRAFT_1880 +0.7 1.4 Predicted periplasmic lipoprotein compare
EX28DRAFT_2811 +0.7 2.4 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) compare
EX28DRAFT_0605 +0.7 4.2 flagellar biosynthetic protein FliQ compare
EX28DRAFT_0484 +0.7 2.5 RND family efflux transporter, MFP subunit compare
EX28DRAFT_1852 +0.7 3.8 Flagellar basal-body P-ring protein compare
EX28DRAFT_0749 +0.7 1.0 Putative translation initiation inhibitor, yjgF family compare
EX28DRAFT_0441 +0.7 1.1 Acetyltransferases compare
EX28DRAFT_3574 +0.7 0.7 Protein of unknown function (DUF1435) compare
EX28DRAFT_1547 +0.7 1.7 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
EX28DRAFT_0770 +0.7 1.1 Transglycosylase SLT domain compare
EX28DRAFT_4138 +0.7 1.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_0853 +0.7 1.2 respiratory nitrate reductase chaperone NarJ compare
EX28DRAFT_1854 +0.7 3.5 flagellar basal-body rod protein FlgG, Gram-negative bacteria compare
EX28DRAFT_4262 +0.7 0.9 phage shock protein G compare
EX28DRAFT_1436 +0.7 2.2 Major Facilitator Superfamily compare
EX28DRAFT_0659 +0.7 3.9 Flagellar transcriptional activator (FlhC) compare
EX28DRAFT_0894 +0.7 2.1 phage major capsid protein, P2 family compare
EX28DRAFT_0734 +0.7 3.4 RNA compare
EX28DRAFT_4253 +0.7 1.2 Phage-related lysozyme (muraminidase) compare
EX28DRAFT_0444 +0.6 1.2 Protein-tyrosine-phosphatase compare
EX28DRAFT_1318 +0.6 1.4 hypothetical protein compare
EX28DRAFT_0606 +0.6 3.4 flagellar biosynthetic protein FliP compare
EX28DRAFT_2866 +0.6 4.8 Uncharacterized domain of BarA-like signal transduction histidine kinases compare
EX28DRAFT_0802 +0.6 2.4 hypothetical protein compare
EX28DRAFT_0479 +0.6 2.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_2901 +0.6 2.0 prepilin-type N-terminal cleavage/methylation domain compare
EX28DRAFT_0607 +0.6 3.8 flagellar biosynthetic protein FliO compare
EX28DRAFT_4347 +0.6 0.5 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3938 +0.6 2.1 Phosphotransferase system cellobiose-specific component IIB compare
EX28DRAFT_0724 +0.6 0.6 GAF domain-containing protein compare
EX28DRAFT_2498 +0.6 1.7 Haemolysin expression modulating protein compare
EX28DRAFT_0633 +0.6 5.1 two component transcriptional regulator, LuxR family compare
EX28DRAFT_1859 +0.6 1.4 flagellar basal-body rod protein FlgB compare
EX28DRAFT_2118 +0.6 1.1 arsenate reductase (glutaredoxin) compare
EX28DRAFT_3923 +0.6 3.9 Predicted transcriptional regulators compare
EX28DRAFT_0107 +0.6 2.5 RNA methyltransferase, TrmH family, group 1 compare
EX28DRAFT_4271 +0.6 0.4 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_1234 +0.6 1.9 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
EX28DRAFT_3453 +0.6 0.6 YhcH/YjgK/YiaL family protein compare
EX28DRAFT_2395 +0.6 2.6 ABC-type dipeptide transport system, periplasmic component compare
EX28DRAFT_2441 +0.6 3.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
EX28DRAFT_3006 +0.6 0.6 citrate lyase acyl carrier protein compare
EX28DRAFT_0675 +0.6 1.3 Chemotaxis protein compare
EX28DRAFT_1977 +0.6 1.4 hemimethylated DNA binding domain compare
EX28DRAFT_1893 +0.6 1.8 Protein of unknown function (DUF1097) compare
EX28DRAFT_1943 +0.6 0.9 Protein of unknown function (DUF3225) compare
EX28DRAFT_4142 +0.6 1.8 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
EX28DRAFT_1946 +0.6 0.9 Transcriptional regulators compare
EX28DRAFT_0623 +0.6 0.9 Bacterial flagellin N-terminal helical region/Bacterial flagellin C-terminal helical region compare
EX28DRAFT_0658 +0.6 1.0 Flagellar transcriptional activator (FlhD) compare
EX28DRAFT_3056 +0.6 1.2 TIGR00156 family protein compare
EX28DRAFT_1182 +0.6 1.6 Trans-aconitate methyltransferase compare
EX28DRAFT_0926 +0.6 0.7 Predicted Fe-S-cluster oxidoreductase compare
EX28DRAFT_0604 +0.6 2.1 flagellar biosynthetic protein FliR compare
EX28DRAFT_1439 +0.6 1.0 Uncharacterized conserved protein compare
EX28DRAFT_1109 +0.6 1.1 peroxiredoxin, OsmC subfamily compare
EX28DRAFT_1982 +0.6 1.2 Predicted membrane protein compare
EX28DRAFT_1275 +0.5 1.2 hypothetical protein compare
EX28DRAFT_1223 +0.5 1.2 Cupin domain/Helix-turn-helix compare
EX28DRAFT_0610 +0.5 3.9 Flagellar basal body-associated protein compare
EX28DRAFT_0373 +0.5 2.7 Predicted hydrolase of alkaline phosphatase superfamily compare
EX28DRAFT_1093 +0.5 1.7 uncharacterized peroxidase-related enzyme compare
EX28DRAFT_3676 +0.5 1.3 mraZ protein compare
EX28DRAFT_2738 +0.5 1.4 ADP-ribose pyrophosphatase compare
EX28DRAFT_0665 +0.5 2.3 Uncharacterized secreted protein compare
EX28DRAFT_1239 +0.5 0.5 hypothetical protein compare
EX28DRAFT_0888 +0.5 1.5 hypothetical protein compare
EX28DRAFT_0576 +0.5 2.0 Siderophore synthetase component compare
EX28DRAFT_1271 +0.5 1.1 NlpC/P60 family compare
EX28DRAFT_2809 +0.5 3.5 Formate hydrogenlyase maturation protein HycH compare
EX28DRAFT_0608 +0.5 1.5 flagellar motor switch protein FliN compare
EX28DRAFT_1862 +0.5 0.9 Flagellar biosynthesis/type III secretory pathway chaperone compare
EX28DRAFT_1564 +0.5 2.4 Phage related hypothetical protein (DUF1799) compare
EX28DRAFT_0905 +0.5 0.7 phage baseplate assembly protein V compare
EX28DRAFT_0206 +0.5 1.9 sulfate ABC transporter, permease protein CysT compare
EX28DRAFT_2944 +0.5 1.2 Protein-disulfide isomerase compare
EX28DRAFT_3079 +0.5 0.4 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1549 +0.5 1.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_2801 +0.5 1.9 hypothetical protein compare
EX28DRAFT_1300 +0.5 0.7 hypothetical protein compare
EX28DRAFT_0042 +0.5 2.9 DNA protecting protein DprA compare
EX28DRAFT_2272 +0.5 2.7 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_1492 +0.5 1.2 dethiobiotin synthase compare
EX28DRAFT_1277 +0.5 1.7 hypothetical protein compare
EX28DRAFT_3626 +0.5 1.0 RNA compare
EX28DRAFT_4484 +0.5 1.9 rarD protein compare
EX28DRAFT_4093 +0.5 2.4 3-oxoacyl-(acyl-carrier-protein) synthase compare
EX28DRAFT_0181 +0.5 1.3 Glycine cleavage system regulatory protein compare
EX28DRAFT_0647 +0.5 0.5 Ferritin-like protein compare
EX28DRAFT_3452 +0.5 1.1 arginine deiminase (EC 3.5.3.6) compare
EX28DRAFT_0416 +0.5 1.8 AraC-type DNA-binding domain-containing proteins compare
EX28DRAFT_4212 +0.5 0.4 Acetyltransferase (GNAT) family compare
EX28DRAFT_1107 +0.5 1.2 Transcriptional regulator compare
EX28DRAFT_3726 +0.5 1.5 Phosphotransferase system, mannose/fructose-specific component IIA compare
EX28DRAFT_3238 +0.5 2.6 Predicted permeases compare
EX28DRAFT_4481 +0.5 2.6 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
EX28DRAFT_1829 +0.5 1.8 hydrolase, TatD family compare
EX28DRAFT_2271 +0.5 2.4 hypothetical protein compare
EX28DRAFT_1041 +0.5 2.4 Putative NADP-dependent oxidoreductases compare
EX28DRAFT_4387 +0.5 1.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_1860 +0.5 2.1 flagella basal body P-ring formation protein FlgA compare
EX28DRAFT_0788 +0.5 1.9 type VI secretion protein, VC_A0114 family compare
EX28DRAFT_3148 +0.5 2.0 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components compare
EX28DRAFT_2074 +0.5 1.2 type II secretion system protein I compare
EX28DRAFT_1766 +0.5 1.4 Nitroreductase compare
EX28DRAFT_3902 +0.5 1.5 sodium--glutamate symport carrier (gltS) compare
EX28DRAFT_1265 +0.5 2.0 ORF6N domain compare
EX28DRAFT_0804 +0.5 0.5 type VI secretion system lysozyme-like protein compare
EX28DRAFT_2316 +0.5 0.8 RNA compare
EX28DRAFT_1980 +0.4 2.3 methylglyoxal synthase compare
EX28DRAFT_2633 +0.4 2.2 Uncharacterised nucleotidyltransferase compare
EX28DRAFT_3854 +0.4 1.1 Transcriptional regulators compare
EX28DRAFT_1754 +0.4 2.3 Uncharacterized conserved protein compare
EX28DRAFT_1385 +0.4 0.7 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
EX28DRAFT_0250 +0.4 1.3 PAAR motif compare
EX28DRAFT_3517 +0.4 1.2 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides compare
EX28DRAFT_2869 +0.4 2.0 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily compare
EX28DRAFT_2795 +0.4 1.3 Glucitol operon activator compare
EX28DRAFT_4150 +0.4 0.9 Protein of unknown function (DUF2531) compare
EX28DRAFT_1412 +0.4 1.0 phenylacetic acid degradation protein PaaD compare
EX28DRAFT_4447 +0.4 1.0 PPIC-type PPIASE domain compare
EX28DRAFT_1916 +0.4 2.3 pyrimidine utilization protein C compare
EX28DRAFT_1632 +0.4 1.6 pyridoxal kinase compare
EX28DRAFT_0854 +0.4 1.3 respiratory nitrate reductase, gamma subunit compare
EX28DRAFT_1296 +0.4 2.0 Phage-related lysozyme (muraminidase) compare
EX28DRAFT_1066 +0.4 2.3 translation elongation factor EF-G compare
EX28DRAFT_4416 +0.4 1.1 fructose-6-phosphate aldolase, TalC/MipB family compare
EX28DRAFT_3232 +0.4 1.5 transcription elongation factor GreA compare
EX28DRAFT_0768 +0.4 1.2 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
EX28DRAFT_0160 +0.4 0.3 hypothetical protein compare
EX28DRAFT_4202 +0.4 1.7 phosphonate ABC transporter, permease protein PhnE compare
EX28DRAFT_1397 +0.4 1.8 cupin fold metalloprotein, WbuC family compare
EX28DRAFT_1236 +0.4 1.0 Transcriptional regulator compare
EX28DRAFT_1841 +0.4 0.3 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_1519 +0.4 1.2 RND family efflux transporter, MFP subunit compare
EX28DRAFT_1295 +0.4 0.7 Protein of unknown function (DUF2570) compare
EX28DRAFT_0938 +0.4 1.7 Predicted metal-dependent phosphoesterases (PHP family) compare
EX28DRAFT_3924 +0.4 1.4 hydroxyisourate hydrolase compare
EX28DRAFT_1200 +0.4 1.1 Acetyltransferases compare
EX28DRAFT_1873 +0.4 0.7 Protein of unknown function (DUF2770) compare
EX28DRAFT_0497 +0.4 1.6 colanic acid biosynthesis acetyltransferase WcaB compare
EX28DRAFT_1787 +0.4 1.1 Predicted membrane protein compare
EX28DRAFT_3247 +0.4 1.4 mce related protein compare
EX28DRAFT_0784 +0.4 2.1 Transcriptional regulator compare
EX28DRAFT_2277 +0.4 0.7 dinuclear metal center protein, YbgI/SA1388 family compare
EX28DRAFT_2768 +0.4 1.4 efflux pump membrane protein (multidrug resistance protein A) compare
EX28DRAFT_1954 +0.4 1.6 tRNA compare
EX28DRAFT_1065 +0.4 0.7 Predicted transcriptional regulators compare
EX28DRAFT_3978 +0.4 2.6 phosphoglycerate transporter family protein/D-galactonate transporter compare
EX28DRAFT_1303 +0.4 0.7 hypothetical protein compare
EX28DRAFT_3198 +0.4 1.8 Phosphoheptose isomerase compare
EX28DRAFT_2282 +0.4 0.8 K+-transporting ATPase, C subunit compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in in planta experiments

For in planta Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours across organisms