Experiment set1IT005 for Variovorax sp. OAS795

Compare to:

D-Arabinose carbon source

200 most detrimental genes:

  gene name fitness t score description  
ABID97_RS05820 +11.6 21.1 FadR/GntR family transcriptional regulator compare
ABID97_RS06395 +7.4 26.0 histone H1-like DNA-binding protein compare
ABID97_RS05825 +7.0 28.0 SDR family oxidoreductase compare
ABID97_RS05810 +7.0 4.6 TRAP transporter small permease compare
ABID97_RS05805 +6.6 11.7 TRAP transporter large permease compare
ABID97_RS05815 +5.1 6.1 sialic acid TRAP transporter substrate-binding protein SiaP compare
ABID97_RS12460 +4.3 14.6 acetoacetyl-CoA reductase compare
ABID97_RS16450 +4.0 21.3 anti-sigma factor compare
ABID97_RS16910 +3.8 29.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS07140 +3.5 5.4 transaldolase family protein compare
ABID97_RS01955 +2.7 16.5 FadR/GntR family transcriptional regulator compare
ABID97_RS00095 +2.6 21.0 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABID97_RS23045 +2.6 14.2 phosphatase PAP2 family protein compare
ABID97_RS22620 +2.5 15.7 response regulator transcription factor compare
ABID97_RS23040 +2.5 13.8 polysaccharide biosynthesis/export family protein compare
ABID97_RS22625 +2.4 20.5 HAMP domain-containing sensor histidine kinase compare
ABID97_RS21385 +2.4 10.0 phosphomannomutase/phosphoglucomutase compare
ABID97_RS22990 +2.3 12.9 hypothetical protein compare
ABID97_RS02015 +2.2 10.9 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
ABID97_RS23030 +2.2 15.1 polysaccharide biosynthesis tyrosine autokinase compare
ABID97_RS00565 +2.1 18.0 phosphoenolpyruvate--protein phosphotransferase compare
ABID97_RS05830 +2.0 10.8 SDR family NAD(P)-dependent oxidoreductase compare
ABID97_RS14265 +2.0 13.9 protease modulator HflC compare
ABID97_RS23000 +2.0 18.8 YjbH domain-containing protein compare
ABID97_RS23695 +2.0 15.6 heat-inducible transcriptional repressor HrcA compare
ABID97_RS23390 +2.0 14.5 RNA pyrophosphohydrolase compare
ABID97_RS07360 +2.0 13.5 response regulator transcription factor compare
ABID97_RS05725 +2.0 13.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABID97_RS03485 +1.9 15.3 GtrA family protein compare
ABID97_RS09985 +1.9 2.6 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS07260 +1.7 5.8 TIM44-like domain-containing protein compare
ABID97_RS00570 +1.6 3.6 HPr family phosphocarrier protein compare
ABID97_RS01855 +1.6 2.3 preprotein translocase subunit YajC compare
ABID97_RS03475 +1.6 12.4 hypothetical protein compare
ABID97_RS23055 +1.6 12.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABID97_RS14260 +1.6 11.3 FtsH protease activity modulator HflK compare
ABID97_RS16740 +1.6 5.4 YebC/PmpR family DNA-binding transcriptional regulator compare
ABID97_RS09980 +1.6 5.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABID97_RS23050 +1.6 6.8 large conductance mechanosensitive channel protein MscL compare
ABID97_RS23665 +1.6 3.2 DNA-directed RNA polymerase subunit omega compare
ABID97_RS22995 +1.6 13.5 YjbF family lipoprotein compare
ABID97_RS06140 +1.5 3.6 DUF484 family protein compare
ABID97_RS02170 +1.5 12.7 hypothetical protein compare
ABID97_RS07285 +1.5 5.3 DUF502 domain-containing protein compare
ABID97_RS23860 +1.4 5.2 RsmD family RNA methyltransferase compare
ABID97_RS07490 +1.4 2.5 YceH family protein compare
ABID97_RS02230 +1.4 11.6 Stp1/IreP family PP2C-type Ser/Thr phosphatase compare
ABID97_RS23060 +1.4 8.7 Nif3-like dinuclear metal center hexameric protein compare
ABID97_RS14320 +1.4 3.5 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
ABID97_RS19125 +1.4 7.3 sugar transferase compare
ABID97_RS01975 +1.4 9.6 MltA domain-containing protein compare
ABID97_RS28000 +1.3 1.7 NADPH-dependent FMN reductase compare
ABID97_RS22595 +1.3 4.9 3',5'-nucleoside bisphosphate phosphatase compare
ABID97_RS19120 +1.3 2.7 polysaccharide biosynthesis tyrosine autokinase compare
ABID97_RS17740 +1.3 9.0 response regulator transcription factor compare
ABID97_RS28830 +1.3 3.6 GntR family transcriptional regulator compare
ABID97_RS05710 +1.3 11.3 glycosyltransferase compare
ABID97_RS05845 +1.3 3.2 SDR family oxidoreductase compare
ABID97_RS07865 +1.3 8.6 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
ABID97_RS02305 +1.3 10.7 SET domain-containing protein-lysine N-methyltransferase compare
ABID97_RS23025 +1.3 9.4 sugar transferase compare
ABID97_RS08680 +1.2 2.9 helix-turn-helix domain-containing protein compare
ABID97_RS19110 +1.2 2.5 hypothetical protein compare
ABID97_RS17215 +1.2 3.8 YkvA family protein compare
ABID97_RS22105 +1.2 7.7 ABC transporter ATP-binding protein compare
ABID97_RS25250 +1.2 7.0 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABID97_RS19085 +1.2 6.2 amino acid adenylation domain-containing protein compare
ABID97_RS22095 +1.2 9.0 ABC transporter permease compare
ABID97_RS05480 +1.2 8.8 EAL domain-containing protein compare
ABID97_RS05740 +1.2 4.6 glycosyltransferase family A protein compare
ABID97_RS20040 +1.2 1.9 amino acid ABC transporter ATP-binding protein compare
ABID97_RS19395 +1.2 3.6 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABID97_RS09330 +1.2 4.1 FCD domain-containing protein compare
ABID97_RS15840 +1.1 3.2 aminotransferase class V-fold PLP-dependent enzyme compare
ABID97_RS10880 +1.1 3.6 Mth938-like domain-containing protein compare
ABID97_RS11375 +1.1 1.7 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS05705 +1.1 9.5 GDP-mannose 4,6-dehydratase compare
ABID97_RS29150 +1.1 2.1 maleylacetate reductase compare
ABID97_RS18505 +1.1 1.5 transglutaminase family protein compare
ABID97_RS21300 +1.1 3.7 phosphogluconate dehydratase compare
ABID97_RS26545 +1.1 0.9 alpha/beta fold hydrolase compare
ABID97_RS04115 +1.1 2.4 RNA-binding protein compare
ABID97_RS15590 +1.1 2.2 disulfide bond formation protein B compare
ABID97_RS22980 +1.1 3.2 cytochrome bc complex cytochrome b subunit compare
ABID97_RS22100 +1.0 4.2 ABC transporter permease compare
ABID97_RS15150 +1.0 1.5 phage tail assembly protein compare
ABID97_RS18940 +1.0 2.2 Crp/Fnr family transcriptional regulator compare
ABID97_RS01075 +1.0 2.4 AMP-binding protein compare
ABID97_RS16430 +1.0 5.7 type II toxin-antitoxin system RatA family toxin compare
ABID97_RS27900 +1.0 1.8 DUF4242 domain-containing protein compare
ABID97_RS05475 +1.0 7.9 TRAP transporter substrate-binding protein compare
ABID97_RS00285 +1.0 4.6 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
ABID97_RS13025 +1.0 1.2 helix-turn-helix domain-containing protein compare
ABID97_RS10210 +1.0 1.3 TfoX/Sxy family protein compare
ABID97_RS05730 +1.0 7.1 glycosyltransferase family 2 protein compare
ABID97_RS03610 +1.0 2.4 pentapeptide repeat-containing protein compare
ABID97_RS28945 +1.0 1.4 tripartite tricarboxylate transporter TctB family protein compare
ABID97_RS16515 +1.0 6.0 ABC transporter permease subunit compare
ABID97_RS06195 +1.0 1.2 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABID97_RS18820 +1.0 1.0 PrpF domain-containing protein compare
ABID97_RS19335 +1.0 3.3 DUF802 domain-containing protein compare
ABID97_RS07145 +1.0 2.6 carbohydrate kinase compare
ABID97_RS20295 +1.0 2.8 N-acetylmuramoyl-L-alanine amidase compare
ABID97_RS22090 +1.0 7.2 BMP family ABC transporter substrate-binding protein compare
ABID97_RS05795 +1.0 3.0 malate/lactate/ureidoglycolate dehydrogenase compare
ABID97_RS23015 +0.9 6.2 glycosyltransferase family 4 protein compare
ABID97_RS25150 +0.9 4.4 thioredoxin family protein compare
ABID97_RS14305 +0.9 2.0 arylesterase compare
ABID97_RS16955 +0.9 3.2 biopolymer transporter ExbD compare
ABID97_RS12110 +0.9 1.4 phosphoribosyltransferase family protein compare
ABID97_RS17735 +0.9 5.9 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS27495 +0.9 2.7 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS22985 +0.9 1.6 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABID97_RS22605 +0.9 3.0 L-threonylcarbamoyladenylate synthase compare
ABID97_RS25630 +0.9 1.9 HupE/UreJ family protein compare
ABID97_RS05840 +0.9 3.6 LysR substrate-binding domain-containing protein compare
ABID97_RS02155 +0.9 6.6 glycosyltransferase family 4 protein compare
ABID97_RS19790 +0.9 6.5 hypothetical protein compare
ABID97_RS16520 +0.9 7.2 extracellular solute-binding protein compare
ABID97_RS19010 +0.9 1.4 hypothetical protein compare
ABID97_RS16510 +0.9 6.5 ABC transporter permease compare
ABID97_RS16950 +0.9 5.1 MotA/TolQ/ExbB proton channel family protein compare
ABID97_RS02165 +0.9 7.3 glycosyltransferase compare
ABID97_RS17860 +0.9 3.8 peptidylprolyl isomerase compare
ABID97_RS20260 +0.9 4.2 DUF72 domain-containing protein compare
ABID97_RS05790 +0.9 5.6 DMT family transporter compare
ABID97_RS08240 +0.9 1.3 heme biosynthesis HemY N-terminal domain-containing protein compare
ABID97_RS10305 +0.9 1.4 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS29335 +0.9 2.1 glycosyltransferase family 4 protein compare
ABID97_RS14735 +0.9 3.2 methyltransferase domain-containing protein compare
ABID97_RS15930 +0.9 2.5 Tex family protein compare
ABID97_RS05700 +0.8 6.5 GDP-mannose 4,6-dehydratase compare
ABID97_RS19795 +0.8 2.4 hypothetical protein compare
ABID97_RS11510 +0.8 2.1 ATP-binding cassette domain-containing protein compare
ABID97_RS00300 +0.8 4.5 helix-turn-helix transcriptional regulator compare
ABID97_RS13390 +0.8 1.5 NAD-dependent succinate-semialdehyde dehydrogenase compare
ABID97_RS09405 +0.8 1.2 xanthine dehydrogenase family protein subunit M compare
ABID97_RS24370 +0.8 2.2 DUF1841 family protein compare
ABID97_RS04480 +0.8 1.6 magnesium/cobalt transporter CorA compare
ABID97_RS07150 +0.8 4.7 AraC family transcriptional regulator compare
ABID97_RS04005 +0.8 1.8 ATP-binding cassette domain-containing protein compare
ABID97_RS12280 +0.8 2.1 c-type cytochrome compare
ABID97_RS17745 +0.8 3.4 sensor histidine kinase compare
ABID97_RS15215 +0.8 1.0 lysozyme compare
ABID97_RS27445 +0.8 2.2 malonate decarboxylase holo-[acyl-carrier-protein] synthase compare
ABID97_RS03995 +0.8 2.3 ABC-type transport auxiliary lipoprotein family protein compare
ABID97_RS25830 +0.8 1.9 Gfo/Idh/MocA family oxidoreductase compare
ABID97_RS22375 +0.8 1.3 OsmC family protein compare
ABID97_RS17050 +0.8 1.5 RlmE family RNA methyltransferase compare
ABID97_RS10725 +0.8 5.0 peptidoglycan DD-metalloendopeptidase family protein compare
ABID97_RS17330 +0.8 1.4 adenosylcobinamide-GDP ribazoletransferase compare
ABID97_RS13700 +0.8 3.4 hypothetical protein compare
ABID97_RS15680 +0.8 4.3 peptidylprolyl isomerase compare
ABID97_RS20210 +0.8 3.2 ATP-binding protein compare
ABID97_RS23065 +0.8 4.4 trypsin-like peptidase domain-containing protein compare
ABID97_RS25860 +0.8 1.8 LysR family transcriptional regulator compare
ABID97_RS18360 +0.8 2.3 hypothetical protein compare
ABID97_RS02195 +0.8 6.7 nucleotide sugar dehydrogenase compare
ABID97_RS12580 +0.8 3.2 methenyltetrahydromethanopterin cyclohydrolase compare
ABID97_RS08900 +0.8 1.3 branched-chain amino acid ABC transporter permease compare
ABID97_RS22825 +0.8 2.1 ABC transporter ATP-binding protein compare
ABID97_RS17630 +0.8 4.9 squalene synthase HpnC compare
ABID97_RS27500 +0.8 1.4 AMP-binding protein compare
ABID97_RS25720 +0.8 1.0 FAD-binding oxidoreductase compare
ABID97_RS22975 +0.7 2.0 cytochrome c1 compare
ABID97_RS01105 +0.7 2.1 AMP-binding protein compare
ABID97_RS11285 +0.7 2.7 hypothetical protein compare
ABID97_RS23010 +0.7 3.7 hypothetical protein compare
ABID97_RS24640 +0.7 1.2 OmpA family protein compare
ABID97_RS20130 +0.7 4.3 outer membrane protein assembly factor BamC compare
ABID97_RS21360 +0.7 4.2 TetR/AcrR family transcriptional regulator compare
ABID97_RS07455 +0.7 2.6 outer membrane protein assembly factor BamE compare
ABID97_RS12970 +0.7 1.1 pentapeptide repeat-containing protein compare
ABID97_RS13920 +0.7 3.9 IclR family transcriptional regulator compare
ABID97_RS14935 +0.7 4.4 xanthine dehydrogenase family protein molybdopterin-binding subunit compare
ABID97_RS15045 +0.7 2.5 DNA cytosine methyltransferase compare
ABID97_RS11685 +0.7 1.7 M20/M25/M40 family metallo-hydrolase compare
ABID97_RS12200 +0.7 1.5 hypothetical protein compare
ABID97_RS03785 +0.7 1.7 recombination-associated protein RdgC compare
ABID97_RS08760 +0.7 3.8 CoA pyrophosphatase compare
ABID97_RS05785 +0.7 3.9 DUF2182 domain-containing protein compare
ABID97_RS01725 +0.7 1.0 META domain-containing protein compare
ABID97_RS03560 +0.7 4.6 molybdopterin cofactor-binding domain-containing protein compare
ABID97_RS04880 +0.7 2.3 helix-turn-helix domain-containing protein compare
ABID97_RS22920 +0.7 1.4 hypothetical protein compare
ABID97_RS07110 +0.7 3.7 sugar ABC transporter substrate-binding protein compare
ABID97_RS07375 +0.7 3.9 molybdopterin-synthase adenylyltransferase MoeB compare
ABID97_RS21270 +0.7 3.0 glutathione S-transferase family protein compare
ABID97_RS22740 +0.7 1.6 DUF58 domain-containing protein compare
ABID97_RS10220 +0.7 2.3 GNAT family N-acetyltransferase compare
ABID97_RS07970 +0.7 1.6 hypothetical protein compare
ABID97_RS17635 +0.7 2.0 presqualene diphosphate synthase HpnD compare
ABID97_RS16505 +0.7 3.0 dipeptide ABC transporter ATP-binding protein compare
ABID97_RS27195 +0.7 1.1 hypothetical protein compare
ABID97_RS08275 +0.7 1.8 SAM-dependent methyltransferase compare
ABID97_RS09795 +0.7 1.7 lysozyme compare
ABID97_RS04010 +0.7 3.6 ABC transporter permease compare
ABID97_RS27465 +0.7 2.3 malonate decarboxylase subunit alpha compare
ABID97_RS11525 +0.7 1.1 enolase C-terminal domain-like protein compare
ABID97_RS16665 +0.7 4.2 S24 family peptidase compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source D-Arabinose in Variovorax sp. OAS795

For carbon source D-Arabinose across organisms