Experiment set18S354 for Agrobacterium fabrum C58

Compare to:

Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

200 most important genes:

  gene name fitness t score description  
Atu1701 -5.9 -2.0 protein-L-isoaspartate O-methyltransferase compare
Atu0030 -5.8 -1.1 phosphocarrier protein HPr compare
Atu2239 -5.8 -2.6 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0319 -5.4 -1.1 ubiquinone biosynthesis protein compare
Atu1588 -5.0 -6.9 homoserine dehydrogenase compare
Atu0876 -5.0 -1.7 superoxide dismutase compare
Atu1359 -4.9 -1.0 dnaK deletion suppressor protein compare
Atu2036 -4.8 -15.6 acetolactate synthase III, large subunit compare
Atu6098 -4.7 -0.9 transcriptional regulator, HTH family compare
Atu0678 -4.6 -7.5 histidyl-tRNA synthetase compare
Atu0679 -4.5 -4.6 ATP phosphoribosyltransferase compare
Atu3732 -4.4 -6.2 hemolysin compare
Atu0043 -4.3 -1.8 imidazoleglycerol-phosphate dehydratase compare
Atu0537 -4.3 -6.5 histidinol dehydrogenase compare
Atu2832 -4.1 -2.1 tRNA modification GTPase compare
Atu3908 -3.9 -8.5 GntR family transcriptional regulator compare
Atu4616 -3.9 -1.3 dTDP-4-dehydrorhamnose reductase compare
Atu0041 -3.8 -1.5 glutamine amidotransferase compare
Atu0031 -3.8 -0.7 PTS system, IIA component compare
Atu2125 -3.7 -1.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu1705 -3.6 -4.6 SEC-independent protein translocase protein compare
Atu1030 -3.6 -1.2 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2464 -3.5 -2.0 formyltetrahydrofolate deformylase compare
Atu0039 -3.5 -1.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu2803 -3.4 -3.7 Cobalamin biosynthesis associated protein compare
Atu1470 -3.4 -0.9 Camphor resistance protein compare
Atu2040 -3.4 -4.2 phosphoserine phosphatase compare
Atu3706 -3.3 -5.3 D-3-phosphoglycerate dehydrogenase compare
Atu1021 -3.2 -2.2 outer membrane protein compare
Atu2831 -3.1 -3.1 glucose inhibited division protein A compare
Atu0040 -3.1 -0.8 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1589 -3.0 -7.9 aminotransferase, class I compare
Atu0486 -3.0 -3.6 dihydroorotate dehydrogenase compare
Atu3353 -3.0 -7.2 mannose-1-phosphate guanylyltransferase compare
Atu3885 -3.0 -7.4 inositol monophosphatase compare
Atu3598 -3.0 -1.0 thiol:disulfide interchange protein compare
Atu0843 -3.0 -10.3 P type cation (metal) transporter, ATPase component compare
Atu1344 -2.9 -1.5 hypothetical protein compare
Atu0659 -2.9 -4.9 NTP pyrophosphohydrolase, MutT family compare
Atu0692 -2.9 -7.0 glutathione-regulated potassium-efflux system protein compare
Atu0086 -2.9 -0.8 ribosome-binding factor A compare
Atu2113 -2.9 -2.3 N-acetylmuramoyl-L-alanine amidase compare
Atu3707 -2.8 -1.2 phosphoserine aminotransferase compare
Atu3311 -2.8 -11.3 phosphomannose isomerase compare
Atu4187 -2.8 -0.9 tRNA-Met compare
Atu0477 -2.7 -1.5 hypothetical protein compare
Atu0038 -2.7 -2.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0298 -2.7 -4.4 orotidine 5 compare
Atu4773 -2.7 -0.7 two component response regulator compare
Atu1327 -2.7 -1.7 NADH-ubiquinone oxidoreductase compare
Atu0101 -2.7 -3.8 cytochrome c compare
Atu8191 -2.7 -0.7 hypothetical protein compare
Atu1127 -2.6 -2.0 molybdopterin converting factor small subunit compare
Atu4317 -2.6 -1.9 TetR family transcriptional regulator compare
Atu5160 -2.6 -2.6 transcriptional regulator protein compare
Atu8094 -2.6 -1.8 hypothetical protein compare
Atu2274 -2.6 -5.9 cation efflux system protein compare
Atu2163 -2.6 -1.0 hypothetical protein compare
Atu3469 -2.6 -1.7 phosphoglyceromutase compare
Atu2554 -2.6 -2.1 lysyl-tRNA synthetase compare
Atu0908 -2.6 -3.0 transcriptional regulator compare
Atu8095 -2.5 -5.3 hypothetical protein compare
Atu1542 -2.5 -3.5 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu0340 -2.5 -1.5 SAM dependent methyltransferase compare
Atu0809 -2.4 -1.1 hypothetical protein compare
Atu1750 -2.4 -1.9 phosphoribosyl c-AMP cyclohydrolase compare
Atu2238 -2.4 -5.7 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu1683 -2.4 -1.2 hypothetical protein compare
Atu4617 -2.3 -5.0 dTDP-D-glucose-4,6-dehydratase compare
Atu2685 -2.3 -7.0 aconitate hydratase compare
Atu4614 -2.3 -4.5 glycosyltransferase compare
Atu0211 -2.3 -6.2 hypothetical protein compare
Atu0978 -2.3 -3.5 two component response regulator compare
Atu4618 -2.3 -8.1 dTDP-rhamnose-3,5-epimerase compare
Atu4613 -2.3 -10.7 glycosyltransferase compare
Atu0368 -2.3 -3.4 tRNA pseudouridine synthase I compare
Atu3739 -2.3 -1.9 phosphoglycerate kinase compare
Atu1679 -2.2 -1.8 peptidyl prolyl cis-trans isomerase compare
Atu3727 -2.2 -3.2 hypothetical protein compare
Atu2379 -2.2 -7.1 phosphomannomutase compare
Atu1967 -2.2 -2.1 hypothetical protein compare
Atu0977 -2.2 -2.5 serine protease DO-like protease compare
Atu8096 -2.2 -1.1 hypothetical protein compare
Atu1364 -2.2 -2.9 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0361 -2.2 -0.9 transcriptional regulator compare
Atu0501 -2.2 -7.7 acyl-CoA dehydrogenase compare
Atu2684 -2.2 -1.2 hypothetical protein compare
Atu1592 -2.2 -3.5 hypothetical protein compare
Atu2650 -2.2 -5.3 glycerol-3-phosphate dehydrogenase compare
Atu1838 -2.1 -2.5 ABC transporter, substrate binding protein (amino acid) compare
Atu2183 -2.1 -4.9 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu1103 -2.1 -1.7 rRNA-adenine N6,N6-dimethyltransferase compare
Atu0941 -2.1 -0.7 hypothetical protein compare
Atu0784 -2.1 -1.7 hypothetical protein compare
Atu0354 -2.1 -1.0 ferric uptake regulator compare
Atu3579 -2.1 -2.8 lactoylglutathione lyase compare
Atu1739 -2.1 -2.0 permease compare
Atu5125 -2.1 -3.3 GntR family transcriptional regulator compare
Atu3623 -2.0 -3.0 DnaJ family molecular chaperone compare
Atu3313 -2.0 -2.5 hypothetical protein compare
Atu2555 -2.0 -2.7 L-lysine 2,3-aminomutase compare
Atu8052 -2.0 -1.2 hypothetical protein compare
Atu2790 -2.0 -1.4 3-isopropylmalate dehydratase, small subunit compare
Atu0399 -2.0 -2.3 dihydroorotase compare
Atu1286 -2.0 -2.5 hypothetical protein compare
Atu1205 -2.0 -8.2 threonine dehydratase compare
Atu1075 -1.9 -3.8 amidophosphoribosyltransferase compare
Atu0124 -1.9 -2.7 hypothetical protein compare
Atu1577 -1.9 -3.8 ABC transporter, substrate binding protein (amino acid) compare
Atu4615 -1.9 -4.3 glucose-1-phosphate thymidylyltransferase compare
Atu0768 -1.9 -7.3 cytochrome-c oxidase chain I compare
Atu0322 -1.9 -3.7 enoyl CoA hydratase compare
Atu2587 -1.9 -8.4 ABC transporter, substrate binding protein (oligopeptide) compare
Atu1546 -1.9 -3.4 transcriptional regulator, MerR family compare
Atu2640 -1.9 -2.9 hypothetical protein compare
Atu1336 -1.9 -2.5 hypothetical protein compare
Atu0050 -1.9 -2.1 two component response regulator compare
Atu1495 -1.9 -2.7 hypothetical protein compare
Atu1354 -1.9 -0.7 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0767 -1.8 -2.8 cytochrome c oxidase subunit II compare
Atu1176 -1.8 -2.6 hypothetical protein compare
Atu1620 -1.8 -5.0 triosephosphate isomerase compare
Atu0331 -1.8 -1.2 sigma-54 modulation protein compare
Atu2352 -1.8 -1.1 hypothetical protein compare
Atu2798 -1.8 -2.1 precorrin-6y methyltransferase compare
Atu2800 -1.8 -2.0 precorrin-3B C17-methyltransferase compare
Atu0400 -1.8 -2.6 orotate phosphoribosyltransferase compare
Atu2807 -1.7 -4.4 cob(I)alamin adenosyltransferase compare
Atu2522 -1.7 -7.1 agrobacterium chromosomal virulence protein B compare
Atu2237 -1.7 -2.7 cytochrome c1 compare
Atu1077 -1.7 -2.3 DNA repair protein compare
Atu4711 -1.7 -3.7 two component sensor kinase compare
Atu2801 -1.7 -2.1 precorrin-2 C20 methyltransferase compare
Atu1129 -1.7 -5.0 excinuclease ABC chain C compare
Atu1219 -1.7 -0.8 hypothetical protein compare
Atu0503 -1.7 -8.1 enoyl-CoA hydratase compare
Atu3219 -1.7 -9.2 dihydroxy-acid dehydratase compare
Atu1189 -1.7 -2.0 hypothetical protein compare
Atu3517 -1.7 -3.3 acetyltransferase compare
Atu0230 -1.7 -1.1 hypothetical protein compare
Atu1810 -1.7 -0.4 hypothetical protein compare
Atu1687 -1.7 -3.8 anthranilate phosphoribosyltransferase compare
Atu1952 -1.7 -1.0 hypothetical protein compare
Atu0690 -1.7 -1.2 hypothetical protein compare
Atu0770 -1.6 -4.1 cytochrome C oxidase assembly protein compare
Atu0769 -1.6 -0.6 protoheme IX farnesyltransferase compare
Atu0251 -1.6 -6.3 hypothetical protein compare
Atu0999 -1.6 -1.1 magnesium transport protein compare
Atu1308 -1.6 -3.1 aspartate carbamoyl transferase catalytic subunit compare
Atu1688 -1.6 -3.6 indole-3-glycerol-phosphate synthase compare
Atu1689 -1.6 -2.9 molybdenum cofactor biosynthesis protein C compare
Atu2588 -1.6 -3.9 ABC transporter, membrane spanning protein (oligopeptide) compare
Atu2207 -1.6 -1.8 two component sensor kinase compare
Atu3999 -1.6 -1.1 dithiobiotin synthetase compare
Atu3634 -1.6 -2.1 penicillin-binding protein dacf precursor compare
Atu2433 -1.5 -0.8 hypothetical protein compare
Atu1902 -1.5 -2.9 transketolase compare
Atu2808 -1.5 -3.2 cobyric acid synthase compare
Atu1074 -1.5 -5.8 NAD/NADP dependent oxidoreductase compare
Atu0141 -1.5 -0.5 cytochrome O ubiquinol oxidase subunit I compare
Atu8087 -1.5 -0.7 putative peptidoglycan binding protein compare
Atu1891 -1.5 -2.1 cobalamin biosynthesis protein compare
Atu0771 -1.5 -4.4 cytochrome c oxidase subunit III compare
Atu2657 -1.5 -1.6 hypothetical protein compare
Atu2793 -1.5 -2.2 cobyrinic acid a,c-diamide synthase compare
Atu4019 -1.5 -4.5 two component response regulator compare
Atu2586 -1.5 -6.6 ABC transporter, nucleotide binding/ATPase protein (oligopeptide) compare
Atu4685 -1.5 -4.4 LacI family transcriptional regulator compare
Atu0544 -1.5 -1.5 hypothetical protein compare
Atu3468 -1.5 -0.5 hypothetical protein compare
Atu3754 -1.5 -3.1 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1677 -1.5 -1.7 queuine tRNA-ribosyltransferase compare
Atu0189 -1.5 -0.5 ABC transporter, membrane spanning protein (peptide) compare
Atu0062 -1.5 -4.2 transcriptional regulator, ROK family compare
Atu0201 -1.4 -1.1 hypothetical protein compare
Atu2380 -1.4 -1.3 hypothetical protein compare
Atu1371 -1.4 -3.2 glycerophosphoryl diester phosphodiesterase compare
Atu8167 -1.4 -4.5 putative transmembrane protein compare
Atu3755 -1.4 -2.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0036 -1.4 -0.9 hypothetical protein compare
Atu1904 -1.4 -2.0 transcriptional regulator compare
Atu4514 -1.4 -2.3 RpiR family transcriptional regulator compare
Atu3757 -1.4 -1.7 hypothetical protein compare
Atu3465 -1.4 -2.3 metallo-beta-lactamase superfamily protein compare
Atu3249 -1.4 -3.3 septum formation inhibitor compare
Atu4053 -1.4 -0.9 succinoglycan biosynthesis protein compare
Atu1690 -1.4 -3.8 molybdopterin biosynthesis protein compare
Atu3730 -1.4 -0.7 hypothetical protein compare
Atu4580 -1.4 -4.8 hypothetical protein compare
Atu0726 -1.3 -5.2 ring hydroxylating dioxygenase, alpha-subunit compare
Atu2442 -1.3 -1.4 hypothetical protein compare
Atu1874 -1.3 -1.3 RecA protein compare
Atu2682 -1.3 -2.0 hypothetical protein compare
Atu3478 -1.3 -4.6 3-methylcrotonoyl-CoA carboxylase beta subunit compare
Atu3017 -1.3 -0.8 phosphoglyceromutase compare
Atu4166 -1.3 -1.5 UDP-glucose 4-epimerase compare
Atu0979 -1.3 -3.2 two component sensor kinase compare
Atu3580 -1.3 -5.4 methylmalonyl-CoA mutase compare
Atu1793 -1.3 -3.2 phosphatidylcholine synthase compare
Atu1490 -1.3 -1.2 arsenate reductase compare


Specific Phenotypes

For 8 genes in this experiment

For in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct in Agrobacterium fabrum C58

For in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct across organisms