Experiment set18S31 for Pseudomonas syringae pv. syringae B728a

Compare to:

DMSO

200 most detrimental genes:

  gene name fitness t score description  
Psyr_1269 +1.5 3.3 phosphoribosylformylglycinamidine synthase compare
Psyr_1097 +1.2 3.0 glycine cleavage system H protein compare
Psyr_0383 +1.2 1.4 Twin-arginine translocation protein TatB compare
Psyr_1021 +1.2 5.2 Short-chain dehydrogenase/reductase SDR compare
Psyr_0822 +1.1 1.8 1-phosphofructokinase compare
Psyr_3905 +1.0 5.7 glycerol kinase compare
Psyr_1019 +1.0 6.1 Dihydroneopterin aldolase compare
Psyr_2088 +1.0 2.5 2-methylaconitate cis-trans isomerase compare
Psyr_0726 +0.9 3.9 ribosomal large subunit pseudouridine synthase D compare
Psyr_2285 +0.9 2.7 Twin-arginine translocation pathway signal compare
Psyr_RNA28 +0.8 1.7 tRNA-Val compare
Psyr_2557 +0.8 1.6 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase-like protein compare
Psyr_4460 +0.8 1.4 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_0356 +0.8 1.8 L-cystine ABC transporter ATP-binding protein / Diaminopimelate ABC transporter ATP-binding protein compare
Psyr_1662 +0.8 3.8 tRNA pseudouridine synthase compare
Psyr_0907 +0.8 1.6 conserved hypothetical protein compare
Psyr_0033 +0.8 2.3 tryptophan synthase, alpha chain compare
Psyr_3854 +0.7 1.2 OmpA/MotB compare
Psyr_1333 +0.7 3.3 UBA/THIF-type NAD/FAD binding fold protein compare
Psyr_1334 +0.7 2.5 Cysteine desulfuration protein SufE compare
Psyr_3458 +0.7 1.0 Flagellar hook-basal body complex protein FliE compare
Psyr_3896 +0.7 1.3 BFD-like [2Fe-2S]-binding region compare
Psyr_4087 +0.7 1.8 Protein of unknown function DUF520 compare
Psyr_4637 +0.7 2.5 acyl-phosphate glycerol-3-phosphate acyltransferase compare
Psyr_4932 +0.7 5.0 agmatine deiminase compare
Psyr_3419 +0.7 2.1 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_4933 +0.7 4.4 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase compare
Psyr_3958 +0.7 4.7 RNA polymerase, sigma-24 subunit, RpoE compare
Psyr_1668 +0.7 3.2 amidophosphoribosyltransferase compare
Psyr_3566 +0.7 3.3 transcriptional regulator, AraC family compare
Psyr_4241 +0.7 4.6 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_3874 +0.7 3.9 amino acid ABC transporter substrate-binding protein, PAAT family compare
Psyr_4634 +0.7 1.0 Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein compare
Psyr_4786 +0.7 0.6 hypothetical protein compare
Psyr_2562 +0.7 2.1 hypothetical protein compare
Psyr_3926 +0.7 2.0 transcriptional regulator, PadR family compare
Psyr_2255 +0.6 1.5 ABC transporter compare
Psyr_3423 +0.6 4.8 coproporphyrinogen III oxidase, anaerobic compare
Psyr_2752 +0.6 1.6 conserved hypothetical protein compare
Psyr_0616 +0.6 1.5 conserved domain protein compare
Psyr_1859 +0.6 1.3 conserved hypothetical protein compare
Psyr_0447 +0.6 2.2 malonate decarboxylase subunit, putative compare
Psyr_2071 +0.6 2.5 outer membrane lipoprotein OprI compare
Psyr_0453 +0.6 3.0 16S rRNA m(3)U-1498 methyltransferase compare
Psyr_3552 +0.6 1.9 Divalent cation transporter compare
Psyr_1728 +0.6 1.6 tRNA--hydroxylase compare
Psyr_3420 +0.6 2.8 conserved hypothetical protein compare
Psyr_1581 +0.6 1.8 conserved hypothetical protein compare
Psyr_4294 +0.6 2.1 Histone deacetylase family protein compare
Psyr_3742 +0.6 4.1 FAD dependent oxidoreductase:Protein of unknown function DUF752 compare
Psyr_4491 +0.6 1.3 Deoxyribose-phosphate aldolase compare
Psyr_4381 +0.6 4.8 arginine decarboxylase compare
Psyr_3952 +0.6 1.7 conserved hypothetical protein compare
Psyr_4044 +0.6 2.6 Phospholipase D/Transphosphatidylase compare
Psyr_1154 +0.6 2.5 Copper/Zinc superoxide dismutase compare
Psyr_1663 +0.6 2.7 phosphoribosylanthranilate isomerase compare
Psyr_5072 +0.6 0.8 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_1027 +0.6 3.5 conserved hypothetical protein compare
Psyr_4068 +0.6 2.6 conserved hypothetical protein compare
Psyr_4254 +0.6 1.3 conserved hypothetical protein compare
Psyr_4259 +0.6 4.5 ATP-dependent protease, putative compare
Psyr_4380 +0.6 1.1 translation initiation factor 1 (eIF-1/SUI1) compare
Psyr_1802 +0.6 1.8 transcriptional regulator, AsnC family compare
Psyr_2223 +0.6 1.0 sarcosine oxidase, delta subunit compare
Psyr_3293 +0.6 1.3 UspA compare
Psyr_2118 +0.6 1.2 protein of unknown function DUF883 compare
Psyr_3904 +0.5 3.0 Major intrinsic protein compare
Psyr_4278 +0.5 1.5 regulatory protein, LuxR compare
Psyr_4015 +0.5 1.3 conserved domain protein compare
Psyr_4836 +0.5 3.8 N-formylglutamate deformylase compare
Psyr_1748 +0.5 2.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_2921 +0.5 0.8 ADP-ribosylglycohydrolase compare
Psyr_1616 +0.5 1.7 Rieske [2Fe-2S] region compare
Psyr_2471 +0.5 1.0 hydroxymethylglutaryl-CoA lyase compare
Psyr_1864 +0.5 1.8 spermidine synthase compare
Psyr_3805 +0.5 1.5 hypothetical protein compare
Psyr_3784 +0.5 3.0 conserved hypothetical protein compare
Psyr_3567 +0.5 0.9 L-arginine ABC transporter ATP-binding protein / L-ornithine ABC transporter ATP-binding protein compare
Psyr_2126 +0.5 2.1 4-carboxymuconolactone decarboxylase compare
Psyr_1633 +0.5 1.5 MotA/TolQ/ExbB proton channel compare
Psyr_1992 +0.5 2.3 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_0580 +0.5 1.7 23S rRNA Gm-2251 2'-O-methyltransferase compare
Psyr_2049 +0.5 2.4 K+ transporting ATPase, KdpC subunit compare
Psyr_3878 +0.5 2.7 amino acid ABC transporter ATP-binding protein, PAAT family compare
Psyr_0248 +0.5 2.0 conserved hypothetical protein compare
Psyr_1379 +0.5 1.0 Regulatory protein RecX compare
Psyr_2086 +0.5 2.5 2-methylcitrate synthase compare
Psyr_0826 +0.5 1.8 glucose-6-phosphate isomerase compare
Psyr_5030 +0.5 2.1 chorismate lyase compare
Psyr_1949 +0.5 1.8 ABC-3 compare
Psyr_4831 +0.5 1.7 ABC transporter compare
Psyr_4357 +0.5 3.9 HopAJ2 protein compare
Psyr_3688 +0.5 2.0 conserved hypothetical protein compare
Psyr_2270 +0.5 2.7 transferase hexapeptide repeat protein compare
Psyr_1497 +0.5 2.0 Heavy metal response regulator compare
Psyr_3397 +0.5 2.0 transcriptional regulator, LysR family compare
Psyr_3357 +0.5 1.4 transcriptional regulator, LysR family compare
Psyr_3876 +0.5 4.0 amino acid ABC transporter membrane protein 2, PAAT family compare
Psyr_2213 +0.5 2.4 transcriptional regulator, AraC family compare
Psyr_0985 +0.5 1.8 Protein of unknown function UPF0016 compare
Psyr_4437 +0.5 1.7 hypothetical protein compare
Psyr_4112 +0.5 3.2 Protein of unknown function UPF0011 compare
Psyr_0623 +0.5 1.4 Peptidase S24, S26A and S26B compare
Psyr_3875 +0.5 3.5 amino acid ABC transporter membrane protein 1, PAAT family compare
Psyr_4498 +0.5 0.8 outer membrane transport energization protein ExbD compare
Psyr_3475 +0.5 1.6 Flagellar basal body rod protein:Protein of unknown function DUF1078 compare
Psyr_0545 +0.5 1.4 Permease for cytosine/purines, uracil, thiamine, allantoin compare
Psyr_0081 +0.5 1.0 ABC transporter compare
Psyr_1372 +0.5 2.2 Protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psyr_4682 +0.5 1.4 conserved hypothetical protein compare
Psyr_3199 +0.5 0.8 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_1933 +0.5 1.7 hypothetical protein compare
Psyr_1037 +0.5 1.7 ribosomal subunit interface protein, putative compare
Psyr_0371 +0.5 3.2 conserved hypothetical protein compare
Psyr_4874 +0.5 0.7 ABC transporter compare
Psyr_0178 +0.5 1.6 regulator of nucleoside diphosphate kinase compare
Psyr_3571 +0.5 2.7 L-arginine-binding protein / L-ornithine-binding protein compare
Psyr_2134 +0.5 1.0 protein of unknown function DUF903 compare
Psyr_1212 +0.5 0.8 type III secretion protein HrpO compare
Psyr_3257 +0.5 1.3 multisubunit potassium/proton antiporter, PhaG subunit compare
Psyr_0833 +0.5 2.2 conserved hypothetical protein compare
Psyr_3256 +0.5 2.3 multisubunit potassium/proton antiporter, PhaF subunit compare
Psyr_1250 +0.5 1.1 conserved hypothetical protein compare
Psyr_3877 +0.4 2.7 Succinylglutamate desuccinylase/aspartoacylase compare
Psyr_2278 +0.4 1.3 luciferase compare
Psyr_4262 +0.4 0.6 lipoprotein, putative compare
Psyr_0373 +0.4 1.3 CDS compare
Psyr_2364 +0.4 2.5 conserved hypothetical protein compare
Psyr_2419 +0.4 1.8 Protein of unknown function DUF480 compare
Psyr_0635 +0.4 1.3 MaoC-like dehydratase compare
Psyr_3286 +0.4 3.0 conserved hypothetical protein compare
Psyr_3300 +0.4 2.2 Conserved hypothetical protein 147 compare
Psyr_2564 +0.4 1.5 transcriptional regulator, GntR family compare
Psyr_4693 +0.4 1.6 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4835 +0.4 2.3 imidazolonepropionase compare
Psyr_2951 +0.4 2.7 transcriptional regulator, LysR family compare
Psyr_1946 +0.4 1.0 diaminobutyrate aminotransferase apoenzyme compare
Psyr_0986 +0.4 1.8 16S rRNA m(2)G 1207 methyltransferase compare
Psyr_1645 +0.4 1.6 phosphate:acyl-[acyl carrier protein] acyltransferase compare
Psyr_2955 +0.4 1.5 Surfeit locus 4-related protein compare
Psyr_1022 +0.4 1.1 conserved hypothetical protein compare
Psyr_2737 +0.4 2.2 hypothetical protein compare
Psyr_3569 +0.4 3.2 L-ornithine ABC transporter membrane protein / L-arginine ABC transporter membrane protein compare
Psyr_2112 +0.4 1.5 Protein with unknown function DUF469 compare
Psyr_2860 +0.4 1.4 hypothetical protein compare
Psyr_0180 +0.4 2.2 Frataxin-like protein compare
Psyr_1587 +0.4 1.6 Bile acid:sodium symporter compare
Psyr_4465 +0.4 0.8 conserved domain protein compare
Psyr_0895 +0.4 2.9 SpoVT/AbrB-like protein compare
Psyr_3692 +0.4 1.2 conserved hypothetical protein compare
Psyr_4739 +0.4 2.9 tRNA (guanine-N(7)-)-methyltransferase compare
Psyr_2612 +0.4 1.0 syrP protein, putative compare
Psyr_0429 +0.4 2.1 membrane protein, putative compare
Psyr_1108 +0.4 2.9 glyceraldehyde-3-phosphate dehydrogenase compare
Psyr_0437 +0.4 1.2 acyl carrier protein, putative compare
Psyr_1941 +0.4 1.3 ATP-binding region, ATPase-like:Histidine kinase compare
Psyr_2820 +0.4 1.4 RecT protein compare
Psyr_2741 +0.4 1.9 Beta-lactamase compare
Psyr_0411 +0.4 3.5 glutamate synthase (NADPH) large subunit compare
Psyr_4911 +0.4 2.1 amino acid ABC transporter ATP-binding protein, PAAT family compare
Psyr_2114 +0.4 1.4 two component transcriptional regulator, LuxR family compare
Psyr_3105 +0.4 1.7 phosphate ABC transporter membrane protein 1, PhoT family compare
Psyr_4920 +0.4 1.1 conserved hypothetical bacteriophage protein compare
Psyr_3310 +0.4 2.1 transferase hexapeptide repeat protein compare
Psyr_1936 +0.4 1.7 tRNA-U16,U17-dihydrouridine synthase compare
Psyr_3955 +0.4 1.3 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_0315 +0.4 1.3 Protein of unknown function DUF589 compare
Psyr_0069 +0.4 2.2 Na+/Pi-cotransporter:Na/Pi cotransporter II-related protein compare
Psyr_2231 +0.4 2.2 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase compare
Psyr_1779 +0.4 0.9 hypothetical protein compare
Psyr_2618 +0.4 1.7 ABC transporter:Protein of unknown function DUF214 compare
Psyr_2936 +0.4 1.6 conserved hypothetical protein compare
Psyr_2403 +0.4 2.1 Protein of unknown function DUF1330 compare
Psyr_4740 +0.4 2.2 thiazole-phosphate synthase compare
Psyr_1196 +0.4 1.0 type III secretion protein HrpD compare
Psyr_1152 +0.4 1.1 transcriptional regulator, ArsR family compare
Psyr_2742 +0.4 2.8 Iron-containing alcohol dehydrogenase compare
Psyr_3048 +0.4 1.9 transcriptional regulator, LysR family compare
Psyr_3002 +0.4 2.0 conserved hypothetical protein compare
Psyr_3378 +0.4 2.0 Fusaric acid resistance protein conserved region compare
Psyr_1193 +0.4 0.8 type III helper protein HrpZ1 compare
Psyr_4788 +0.4 1.1 lipoprotein, putative compare
Psyr_2656 +0.4 2.2 hypothetical protein compare
Psyr_2360 +0.4 1.0 CBS compare
Psyr_3701 +0.4 0.8 thioredoxin, putative compare
Psyr_2588 +0.4 1.1 HpcH/HpaI aldolase compare
Psyr_2039 +0.4 0.9 Fimbrial protein compare
Psyr_4801 +0.4 1.6 Outer membrane efflux protein compare
Psyr_2332 +0.4 1.8 conserved hypothetical protein compare
Psyr_2406 +0.4 0.9 Flavin reductase-like protein compare
Psyr_2225 +0.4 1.4 methenyltetrahydrofolate cyclohydrolase / 5,10-methylenetetrahydrofolate dehydrogenase (NADP+) compare
Psyr_2430 +0.4 1.8 NUDIX hydrolase compare
Psyr_0068 +0.4 2.2 Insulinase-like:Peptidase M16, C-terminal compare
Psyr_2541 +0.4 1.9 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_2257 +0.4 1.9 Amidohydrolase compare
Psyr_1746 +0.4 1.4 Trigger factor compare
Psyr_4881 +0.4 1.4 RNA methyltransferase TrmH, group 2 compare
Psyr_3498 +0.4 2.7 Conserved hypothetical protein 730 compare
Psyr_0243 +0.4 1.6 cyclic nucleotide-binding protein compare
Psyr_1883 +0.4 1.6 Hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Dimethyl Sulfoxide across organisms