Experiment set18IT076 for Sinorhizobium meliloti 1021

Compare to:

R2A-HEPES with volatiles from Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
SMc02766 -7.0 -8.3 tryptophan synthase subunit beta compare
SMc02767 -6.6 -4.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc02725 -6.3 -7.5 anthranilate synthase compare
SMc00236 -6.2 -4.3 Indole-3-glycerol phosphate synthase compare
SMc00235 -6.2 -4.3 anthranilate phosphoribosyltransferase compare
SMa1635 -5.1 -2.0 hypothetical protein compare
SMc02765 -5.0 -11.3 tryptophan synthase subunit alpha compare
SMc02572 -4.7 -4.6 imidazole glycerol phosphate synthase subunit HisH compare
SMc02569 -4.6 -5.3 imidazole glycerol phosphate synthase subunit HisF compare
SMc02570 -4.6 -9.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc00917 -3.9 -6.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc01004 -3.9 -10.8 phosphoribosyl-AMP cyclohydrolase compare
SMc00918 -3.7 -11.6 ATP phosphoribosyltransferase regulatory subunit compare
SM_b20810 -3.6 -22.5 membrane-located cell surface saccharide acetylase compare
SMc01880 -3.5 -2.4 pantoate--beta-alanine ligase compare
SMc02897 -3.5 -3.3 cytochrome C transmembrane protein compare
SMc02307 -3.4 -8.9 histidinol dehydrogenase compare
SMc01153 -3.1 -1.7 enoyl-CoA hydratase compare
SMc01242 -2.6 -1.8 signal peptide protein compare
SMc02137 -2.5 -5.2 ornithine carbamoyltransferase compare
SMc00580 -2.4 -2.3 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc03100 -2.1 -1.7 hypothetical protein compare
SMc00191 -2.1 -2.0 hypothetical protein compare
SMc00013 -2.0 -1.7 cytochrome C oxidase subunit III transmembrane protein compare
SMc03127 -2.0 -1.9 ABC transporter permease compare
SMc03826 -2.0 -1.3 argininosuccinate synthase compare
SMc00640 -2.0 -8.4 phosphoserine aminotransferase compare
SMc02574 -2.0 -5.6 imidazoleglycerol-phosphate dehydratase compare
SMc02145 -2.0 -1.1 signal peptide protein compare
SMc02755 -1.9 -5.3 S-adenosyl-L-homocysteine hydrolase compare
SMc03069 -1.9 -3.1 6-phosphogluconolactonase compare
SM_b20880 -1.8 -7.6 ATP-dependent RNA helicase compare
SM_b20105 -1.8 -2.2 transcriptional regulator compare
SMc04327 -1.7 -1.5 hypothetical protein compare
SMc01881 -1.7 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc01206 -1.7 -1.7 queuine tRNA-ribosyltransferase compare
SMc04346 -1.7 -5.3 ketol-acid reductoisomerase compare
SMc00711 -1.6 -3.6 cyclohexadienyl dehydrogenase compare
SMa1174 -1.6 -2.3 hypothetical protein compare
SM_b21177 -1.6 -5.8 phosphate uptake ABC transporter ATP-binding protein compare
SM_b21175 -1.6 -5.0 phosphate uptake ABC transporter permease compare
SMc02861 -1.6 -2.7 phosphate transporter compare
SMc04296 -1.5 -0.8 cell division protein FtsZ compare
SMa1894 -1.5 -2.8 methionine sulfoxide reductase B compare
SMc00293 -1.5 -4.7 homoserine dehydrogenase compare
SMa0846 -1.4 -1.5 transposase, fragment compare
SMc01222 -1.4 -7.2 lipopolysaccharide core biosynthesis glycosyl transferase compare
SM_b20294 -1.4 -1.6 transcriptional regulator NanR compare
SMc00419 -1.4 -2.0 glutathione synthetase compare
SMc00017 -1.4 -1.9 homoserine kinase compare
SMc01360 -1.4 -1.8 aspartate carbamoyltransferase catalytic subunit compare
SMc02246 -1.4 -0.9 hypothetical protein compare
SMc02058 -1.3 -2.5 YAJC protein compare
SMc02166 -1.3 -6.7 dihydroorotase compare
SMc03763 -1.3 -0.9 cytosine-specific methyltransferase compare
SMc02280 -1.3 -1.8 hypothetical protein compare
SMc02165 -1.3 -6.1 orotate phosphoribosyltransferase compare
SMc02753 -1.3 -1.0 PTS system transporter subunit IIA compare
SMc03006 -1.3 -1.2 chemotaxis regulator protein compare
SMc02695 -1.3 -4.4 GTP-dependent nucleic acid-binding protein EngD compare
SMc00239 -1.3 -1.0 hypothetical protein compare
SM_b20143 -1.3 -1.4 oligopeptide ABC transporter permease compare
SMc00412 -1.2 -3.8 orotidine 5'-phosphate decarboxylase compare
SMc02245 -1.2 -4.8 dihydroorotate dehydrogenase 2 compare
SMc03066 -1.2 -2.0 hypothetical protein compare
SMc00656 -1.2 -1.2 hypothetical protein compare
SMc02362 -1.2 -1.1 cytochrome c-type biogenesis protein CcmE compare
SMc01441 -1.2 -4.1 membrane bound protease compare
SMc01207 -1.2 -1.5 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SM_b21174 -1.2 -4.0 phosphate uptake ABC transporter permease compare
SM_b20921 -1.2 -2.6 hypothetical protein compare
SMc01440 -1.2 -5.3 hydrolase serine protease transmembrane protein compare
SMc01858 -1.2 -1.3 S-adenosyl-methyltransferase MraW compare
SMc00641 -1.2 -4.2 D-3-phosphoglycerate dehydrogenase compare
SMc00982 -1.1 -3.7 dioxygenase compare
SMc01364 -1.1 -1.3 DNA topoisomerase I compare
SMc00010 -1.1 -0.7 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc01494 -1.1 -7.7 phosphoserine phosphatase compare
SMc02287 -1.1 -1.6 DNA-invertase compare
SMc00085 -1.1 -2.8 cytochrome oxidase complex biogenesis factor transmembrane protein compare
SMc02862 -1.1 -4.2 Pit accessory protein compare
SMc02906 -1.1 -1.0 hypothetical protein compare
SMc00821 -1.1 -1.5 hypothetical protein compare
SM_b20055 -1.1 -1.8 transcriptional regulator compare
SMc01089 -1.1 -1.3 hypothetical protein compare
SMc00963 -1.0 -1.5 hypothetical protein compare
SMc00188 -1.0 -4.7 cytochrome B transmembrane protein compare
SMc04401 -1.0 -2.8 transcriptional regulator compare
SM_b21511 -1.0 -1.4 plasmid stability protein compare
SMc00709 -1.0 -3.1 hypothetical protein compare
SMc00427 -1.0 -1.5 peptide chain release factor RF-3 protein compare
SM_b20313 -1.0 -3.5 glycerone kinase compare
SMc02138 -1.0 -4.1 acetylornithine transaminase compare
SMc01608 -1.0 -3.2 ABC transporter ATP-binding protein compare
SMa0674 -1.0 -1.2 hypothetical protein compare
SM_b20323 -1.0 -0.9 transcriptional regulator compare
SMc04866 -1.0 -2.6 hypothetical protein compare
SMc00450 -1.0 -1.1 protoheme IX farnesyltransferase compare
SMc01845 -1.0 -1.0 transglycosylase transmembrane protein compare
SMc00009 -1.0 -4.1 cytochrome C oxidase subunit II protein compare
SM_b21176 -1.0 -2.6 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc01569 -1.0 -0.5 carbamoyl phosphate synthase small subunit compare
SM_b21454 -0.9 -1.6 hypothetical protein compare
SMc05020 -0.9 -1.5 entericidin A precursor compare
SMc01223 -0.9 -2.1 transcriptional regulator compare
SM_b20320 -0.9 -1.2 TRAP-type large permease component compare
SMc01726 -0.9 -3.2 acetylglutamate kinase compare
SM_b20752 -0.9 -3.4 3-hydroxyisobutyryl-CoA hydrolase compare
SM_b20302 -0.9 -1.8 hypothetical protein compare
SMc00876 -0.9 -2.4 ATP-binding MRP protein compare
SMc01801 -0.9 -2.2 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SM_b20814 -0.9 -4.0 hypothetical protein compare
SMc04245 -0.9 -5.0 high-affinity zinc uptake system ABC transporter protein compare
SMa1658 -0.9 -1.1 hypothetical protein compare
SMa1063 -0.9 -2.3 hypothetical protein compare
SM_b21480 -0.9 -1.1 hypothetical protein compare
SMc01605 -0.9 -3.4 periplasmic binding ABC transporter protein compare
SM_b21441 -0.9 -0.8 inosine-5'-monophosphate dehydrogenase compare
SMc02102 -0.9 -1.9 hypothetical protein compare
SMc01417 -0.9 -2.3 hypothetical protein compare
SMc01522 -0.9 -1.3 hypothetical protein compare
SMa1697 -0.9 -1.7 hypothetical protein compare
SMc04221 -0.9 -2.5 hypothetical protein compare
SMc04026 -0.9 -3.9 glutamate synthase compare
SMc02338 -0.8 -1.5 periplasmic binding ABC transporter protein compare
SMc00569 -0.8 -1.5 hypothetical protein compare
SMc00067 -0.8 -3.3 outer-membranne lipoprotein compare
SMc00981 -0.8 -4.1 ferredoxin protein compare
SM_b20809 -0.8 -2.8 arabinose-5-phosphate isomerase compare
SMc03824 -0.8 -2.2 transcriptional regulator compare
SMc04385 -0.8 -1.4 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SMc01431 -0.8 -5.6 acetolactate synthase 3 catalytic subunit compare
SMc00091 -0.8 -4.5 sulfate adenylyltransferase compare
SMa2141 -0.8 -2.8 formyltetrahydrofolate deformylase compare
SMc03070 -0.8 -2.6 glucose-6-phosphate 1-dehydrogenase compare
SMc01589 -0.8 -1.7 hypothetical protein compare
SMc02647 -0.8 -1.5 transcriptional regulator compare
SMc02558 -0.8 -2.7 hypothetical protein compare
SMc03878 -0.8 -1.6 acetoacetyl-CoA reductase compare
SMc01606 -0.8 -3.5 permease compare
SMc01836 -0.8 -2.1 hypothetical protein compare
SMa0833 -0.8 -1.0 hypothetical protein compare
SMc04045 -0.8 -4.2 dihydroxy-acid dehydratase compare
SM_b20314 -0.8 -3.6 glycerone kinase compare
SMc00554 -0.8 -3.7 amidophosphoribosyltransferase compare
SMa0357 -0.8 -2.8 hypothetical protein compare
SMc03242 -0.8 -1.3 GTP-binding protein compare
SMc00914 -0.8 -1.9 oxidoreductase compare
SMa0189 -0.8 -2.2 hypothetical protein compare
SM_b21267 -0.8 -2.5 hypothetical protein compare
SMc00856 -0.8 -0.8 hypothetical protein compare
SMc03140 -0.7 -2.8 transcriptional regulator compare
SMc04028 -0.7 -5.8 glutamate synthase compare
SM_b21674 -0.7 -2.2 hypothetical protein compare
SM_b21695 -0.7 -2.3 hypothetical protein compare
SMc01471 -0.7 -1.2 cytochrome C oxidase assembly factor transmembrane protein compare
SM_b20005 -0.7 -1.6 glutathione S-transferase compare
SMa0267 -0.7 -3.0 GntR family transcriptional regulator compare
SMc01933 -0.7 -1.0 hypothetical protein compare
SMc01147 -0.7 -1.1 coproporphyrinogen III oxidase compare
SMc02983 -0.7 -3.1 ornithine, DAP, or arginine decarboxylase compare
SMa0545 -0.7 -2.4 hypothetical protein compare
SMc00104 -0.7 -2.4 hypothetical protein compare
SMc04143 -0.7 -2.3 transcriptional regulator compare
SMa1100 -0.7 -2.6 hypothetical protein compare
SMa2215 -0.7 -2.3 GntR family transcriptional regulator compare
SM_b20148 -0.7 -2.4 transcriptional regulator compare
SMc00451 -0.7 -3.3 processing protease compare
SMc00823 -0.7 -0.8 hypothetical protein compare
SMa2168 -0.7 -1.2 tRNA-Met compare
SMc00079 -0.7 -2.5 hypothetical protein compare
SMc02713 -0.7 -0.9 RNA polymerase sigma-E factor (sigma-24) protein compare
SMc02867 -0.7 -1.4 multidrug-efflux system transmembrane protein compare
SMc01366 -0.7 -2.6 hypothetical protein compare
SMc01341 -0.7 -1.9 hypothetical protein compare
SMc01361 -0.7 -1.3 dihydroorotase compare
SMc02036 -0.7 -1.3 transcriptional regulator compare
SMc00579 -0.7 -2.1 dimethyladenosine transferase compare
SM_b20146 -0.7 -2.8 pyridoxal phosphate biosynthetic protein compare
SM_b20139 -0.7 -2.8 hypothetical protein compare
SMa1093 -0.7 -2.8 hypothetical protein compare
SM_b21035 -0.7 -2.1 hypothetical protein compare
SMc02510 -0.7 -0.5 ferric uptake regulation protein compare
SMc01370 -0.7 -1.2 response regulator PleD compare
SMc01110 -0.7 -2.3 DNA-binding protein compare
SM_b21213 -0.7 -2.0 serinethreonine protein phosphatase compare
SMc02115 -0.6 -0.4 hypothetical protein compare
SMa0659 -0.6 -1.5 cytochrome c binding protein, carboxyl terminus compare
SMc00029 -0.6 -2.1 hypothetical protein compare
SM_b20580 -0.6 -1.4 LysR family transcriptional regulator compare
SMc02354 -0.6 -2.2 hypothetical protein compare
SMc01028 -0.6 -4.8 phosphopyruvate hydratase compare
SMc02846 -0.6 -2.9 sugar kinase compare
SMc01191 -0.6 -2.2 hypothetical protein compare
SMc01607 -0.6 -3.0 permease compare
SMc02520 -0.6 -2.8 glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) (from data) compare
SMc04092 -0.6 -0.7 hypothetical protein compare
SMc01043 -0.6 -2.5 nitrogen assimilation regulatory protein compare
SM_b20282 -0.6 -1.8 spermidine/putrescine ABC transporter permease compare
SMa1630 -0.6 -0.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Sinorhizobium meliloti 1021 in volatiles experiments