Experiment set18IT071 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_1898 -7.1 -3.9 MotA/TolQ/ExbB proton channel family protein compare
PP_1079 -7.0 -4.9 Ornithine carbamoyltransferase compare
PP_0293 -6.6 -2.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2371 -6.1 -4.2 Sulphite reductase hemoprotein, beta subunit compare
PP_3880 -6.0 -1.4 conserved exported protein of unknown function compare
PP_1986 -5.9 -3.0 3-isopropylmalate dehydratase small subunit compare
PP_0082 -5.9 -4.1 tryptophan synthase alpha chain compare
PP_0083 -5.7 -4.0 tryptophan synthase beta chain compare
PP_0967 -5.7 -9.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1568 -5.6 -1.3 conserved protein of unknown function compare
PP_1468 -5.4 -2.5 Tyrosine recombinase XerD compare
PP_0048 -5.2 -1.2 conserved protein of unknown function compare
PP_0025 -5.2 -1.2 hypothetical protein compare
PP_5289 -5.2 -4.8 Acetylglutamate kinase compare
PP_4909 -5.1 -5.0 phosphoserine phosphatase compare
PP_3519 -5.1 -1.2 putative Lipoprotein compare
PP_2328 -5.0 -4.9 Phosphoadenosine phosphosulfate reductase compare
PP_4890 -4.9 -5.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_4679 -4.9 -6.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_t12 -4.8 -1.1 tRNA-Thr compare
PP_4696 -4.8 -3.3 Nitrogen regulation protein NR(I) compare
PP_1045 -4.7 -1.5 Type II secretion pathway protein XcpP compare
PP_5097 -4.5 -9.9 homoserine O-acetyltransferase compare
PP_0290 -4.5 -6.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5185 -4.3 -5.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0292 -4.3 -3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4268 -4.2 -1.4 nucleoid-associated broad specificity regulator compare
PP_0184 -4.2 -7.2 Argininosuccinate lyase compare
PP_4678 -4.2 -10.7 Ketol-acid reductoisomerase compare
PP_0420 -4.1 -8.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0888 -4.1 -2.3 Photosynthetic apparatus regulatory protein RegA compare
PP_2370 -4.1 -3.7 conserved protein of unknown function compare
PP_1824 -4.1 -1.3 Smr domain protein compare
PP_0966 -4.0 -6.9 Histidinol dehydrogenase compare
PP_4828 -4.0 -1.3 Precorrin-8X methylmutase compare
PP_0846 -3.9 -1.5 DnaK-like molecular chaperone specific for IscU compare
PP_0289 -3.8 -5.9 Imidazoleglycerol-phosphate dehydratase compare
PP_4364 -3.8 -3.4 putative Anti-sigma F factor antagonist compare
PP_4680 -3.8 -8.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2388 -3.7 -3.4 Transporter, LysE family compare
PP_0422 -3.6 -3.9 Indole-3-glycerol phosphate synthase compare
PP_2168 -3.6 -7.1 Transaldolase compare
PP_5098 -3.6 -5.4 methionine biosynthesis protein MetW compare
PP_3511 -3.5 -5.1 Branched-chain-amino-acid aminotransferase compare
PP_1988 -3.5 -5.7 3-isopropylmalate dehydrogenase compare
PP_5155 -3.5 -3.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5014 -3.4 -3.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_2530 -3.4 -2.0 conserved protein of unknown function compare
PP_1995 -3.4 -5.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1654 -3.4 -3.9 cysteine synthase B compare
PP_1268 -3.3 -3.0 putative HtrA suppressor protein sohA compare
PP_5303 -3.3 -3.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1985 -3.3 -3.8 3-isopropylmalate dehydratase large subunit compare
PP_1025 -3.3 -7.3 2-isopropylmalate synthase compare
PP_3999 -3.2 -9.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4699 -3.2 -4.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5027 -3.2 -2.0 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_1216 -3.2 -2.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5128 -3.1 -5.5 Dihydroxy-acid dehydratase compare
PP_5748 -3.1 -1.0 cytochrome c heme lyase subunit compare
PP_0787 -3.1 -2.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0417 -3.1 -9.3 Anthranilate synthase component 1 compare
PP_3508 -3.0 -3.0 Protein CobW compare
PP_0152 -3.0 -2.0 conserved exported protein of unknown function compare
PP_4874 -3.0 -1.3 50S ribosomal protein L9 compare
PP_1344 -3.0 -2.2 conserved protein of unknown function compare
PP_5582 -3.0 -1.3 conserved protein of unknown function compare
PP_5015 -2.9 -3.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0965 -2.9 -5.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5347 -2.9 -5.7 pyruvate carboxylase subunit A compare
PP_4994 -2.9 -3.6 conserved protein of unknown function compare
PP_1088 -2.9 -6.7 Argininosuccinate synthase compare
PP_2001 -2.9 -4.7 O-succinylhomoserine sulfhydrylase compare
PP_0421 -2.9 -4.5 Anthranilate phosphoribosyltransferase compare
PP_0364 -2.8 -4.6 pimeloyl-[acp] methyl ester esterase compare
PP_2088 -2.8 -2.0 RNA polymerase sigma factor SigX compare
PP_1362 -2.8 -3.7 pyruvate kinase II compare
PP_5348 -2.7 -4.9 Transcriptional regulator, LysR family compare
PP_1664 -2.7 -1.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_2403 -2.6 -1.3 Chemotaxis protein CheY compare
PP_0363 -2.5 -5.5 8-amino-7-oxononanoate synthase compare
PP_5346 -2.5 -4.4 pyruvate carboxylase subunit B compare
PP_0406 -2.5 -2.8 Nucleotidyltransferase family protein compare
PP_0366 -2.5 -3.4 dethiobiotin synthetase compare
PP_0362 -2.5 -5.6 Biotin synthase compare
PP_2378 -2.4 -2.8 Fe/S biogenesis protein NfuA compare
PP_4700 -2.4 -1.7 pantothenate synthetase compare
PP_2327 -2.4 -3.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1644 -2.4 -2.5 NAD(P)H dehydrogenase (quinone) compare
PP_5095 -2.4 -1.1 pyrroline-5-carboxylate reductase compare
PP_3580 -2.4 -2.3 conserved protein of unknown function compare
PP_4824 -2.3 -5.9 Sensor histidine kinase/response regulator compare
PP_1678 -2.2 -1.9 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1629 -2.2 -4.2 Protein RecA compare
PP_1994 -2.2 -2.3 tRNA pseudouridine (38-40)synthase compare
PP_0738 -2.2 -2.9 conserved protein of unknown function compare
PP_4997 -2.2 -1.4 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_5644 -2.1 -2.3 conserved membrane protein of unknown function compare
PP_5106 -2.1 -1.4 conserved inner membrane protein compare
PP_0725 -2.1 -3.3 conserved hypothetical TPR repeat protein compare
PP_4984 -2.1 -4.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0855 -2.1 -2.2 conserved protein of unknown function compare
PP_1004 -2.1 -1.8 conserved protein of unknown function compare
PP_3505 -2.0 -1.8 conserved protein of unknown function compare
PP_2087 -2.0 -2.3 CmpX protein compare
PP_4966 -2.0 -1.6 transcriptional regulator of methionine metabolism compare
PP_5350 -2.0 -2.3 Transcriptional regulator, RpiR family compare
PP_1783 -2.0 -1.3 dTDP-glucose pyrophosphorylase compare
PP_0393 -2.0 -1.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4895 -2.0 -1.3 tRNA dimethylallyltransferase compare
PP_1729 -1.9 -1.2 conserved protein of unknown function compare
PP_3417 -1.9 -2.1 D-gluconate transporter compare
PP_4482 -1.9 -1.6 Transcriptional regulator, AraC family compare
PP_2140 -1.9 -3.0 conserved protein of unknown function compare
PP_5168 -1.9 -0.9 sulfate/thiosulfate import ATP-binding protein compare
PP_3014 -1.9 -1.6 conserved exported protein of unknown function compare
PP_0839 -1.9 -1.8 tRNA Cm32/Um32 methyltransferase compare
PP_4785 -1.9 -2.4 conserved exported protein of unknown function compare
PP_0566 -1.9 -1.0 translation-related factor compare
PP_1176 -1.9 -1.1 conserved protein of unknown function compare
PP_0276 -1.8 -0.9 Transcriptional regulator, Cro/CI family compare
PP_5528 -1.8 -1.2 conserved protein of unknown function compare
PP_5075 -1.8 -5.5 glutamate synthase (NADPH) beta subunit compare
PP_4480 -1.8 -4.6 arginine N-succinyltransferase, subunit alpha compare
PP_1808 -1.8 -1.4 glucose-6-phosphate isomerase compare
PP_5216 -1.8 -1.0 exopolyphosphatase compare
PP_2044 -1.7 -1.2 conserved inner membrane protein of unknown function compare
PP_1022 -1.7 -3.0 glucose 6-phosphate-1-dehydrogenase compare
PP_4726 -1.7 -1.4 Chaperone protein DnaJ compare
PP_1206 -1.7 -4.5 basic-amino-acid specific porin OprD compare
PP_5310 -1.6 -3.8 junction-specific ATP-dependent DNA helicase compare
PP_4830 -1.6 -2.5 precorrin-6Y C(5,15)-methyltransferase compare
PP_0825 -1.6 -2.0 phosphonates import ATP-binding protein compare
PP_t10 -1.6 -1.3 tRNA-Pro compare
PP_1681 -1.6 -4.5 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4054 -1.6 -1.5 conserved protein of unknown function compare
PP_0719 -1.6 -0.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3924 -1.6 -1.9 conserved protein of unknown function compare
PP_1734 -1.6 -3.0 Probable septum site-determining protein MinC compare
PP_4273 -1.6 -1.3 Transcriptional regulator, MerR family compare
PP_5217 -1.6 -4.3 Polyphosphate kinase compare
PP_3365 -1.5 -0.9 Acetolactate synthase compare
PP_4156 -1.5 -1.6 Transcriptional regulator, LysR family compare
PP_5639 -1.5 -5.0 conserved exported protein of unknown function compare
PP_3035 -1.5 -1.8 conserved protein of unknown function compare
PP_1208 -1.5 -1.6 conserved protein of unknown function, SlyX family compare
PP_5451 -1.5 -1.7 protein of unknown function compare
PP_5448 -1.5 -1.4 conserved protein of unknown function compare
PP_2121 -1.5 -1.0 putative Lipoprotein compare
PP_2568 -1.5 -1.0 Ring-cleaving dioxygenase compare
PP_4477 -1.5 -2.7 N-succinylarginine dihydrolase compare
PP_2302 -1.5 -3.2 DNA-binding, ATP-dependent protease compare
PP_3930 -1.5 -1.0 conserved exported protein of unknown function compare
PP_2978 -1.5 -2.5 conserved protein of unknown function compare
PP_4897 -1.5 -2.0 N-acetylmuramoyl-L-alanine amidase compare
PP_0962 -1.5 -1.5 toluene-tolerance protein compare
PP_0848 -1.5 -1.2 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_3201 -1.5 -2.2 BNR domain protein compare
PP_0365 -1.5 -3.9 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2002 -1.5 -1.7 putative enzyme compare
PP_2737 -1.5 -1.1 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4977 -1.5 -4.0 5,10-methylenetetrahydrofolate reductase compare
PP_3806 -1.5 -1.6 Hydrolase, isochorismatase family compare
PP_1062 -1.5 -1.1 MutT/nudix family protein compare
PP_2720 -1.4 -1.0 conserved protein of unknown function compare
PP_5508 -1.4 -1.0 conserved protein of unknown function compare
PP_2499 -1.4 -1.0 conserved protein of unknown function compare
PP_4917 -1.4 -2.4 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5487 -1.4 -2.1 conserved protein of unknown function compare
PP_2336 -1.4 -2.9 aconitate hydratase 1 compare
PP_4804 -1.4 -1.7 RlpA-like lipoprotein compare
PP_2402 -1.4 -1.2 putative Sensor histidine kinase compare
PP_3117 -1.4 -1.9 putative protein involved in error-prone processing of DNA lesions compare
PP_2360 -1.4 -1.2 putative type 1 pili subunit CsuA/B protein compare
PP_4120 -1.3 -2.1 NADH-quinone oxidoreductase subunit B compare
PP_5104 -1.3 -3.4 thiazole synthase compare
PP_0291 -1.3 -1.4 conserved protein of unknown function compare
PP_0416 -1.3 -2.7 Phosphoglycolate phosphatase compare
PP_5674 -1.3 -2.0 conserved protein of unknown function compare
PP_5090 -1.3 -0.8 putative cell division protein compare
PP_2217 -1.3 -1.9 enoyl-CoA hydratase compare
PP_1011 -1.3 -3.3 glucokinase compare
PP_4681 -1.3 -1.1 conserved protein of unknown function compare
PP_4957 -1.3 -1.0 conserved protein of unknown function compare
PP_0484 -1.2 -2.7 transporter of an unknown substrate compare
PP_2475 -1.2 -2.2 Transcriptional regulator, TetR family compare
PP_3247 -1.2 -1.8 Transporter, bile acid/Na+ symporter family compare
PP_0547 -1.2 -3.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1002 -1.2 -2.7 arginine/ornithine antiporter compare
PP_0949 -1.2 -2.3 putative ATP-binding protein UPF0042 compare
PP_5473 -1.2 -1.0 putative transcriptional regulator, LuxR family compare
PP_3320 -1.2 -1.6 conserved protein of unknown function compare
PP_1237 -1.2 -1.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1128 -1.2 -1.5 OmpA family protein compare
PP_2999 -1.2 -0.9 Glyoxalase family protein compare
PP_1328 -1.2 -1.3 Protein MraZ compare
PP_0040 -1.2 -1.3 hypothetical protein compare
PP_4094 -1.2 -1.1 conserved protein of unknown function compare
PP_0960 -1.2 -1.6 phospholipid ABC transporter binding protein compare
PP_0135 -1.2 -1.6 conserved exported protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms