Experiment set18IT023 for Pseudomonas simiae WCS417

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Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic acid monopotassium salt monohydrate; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_06375 -4.3 -1.2 deoxycytidine triphosphate deaminase compare
PS417_27795 -3.6 -1.0 orotate phosphoribosyltransferase compare
PS417_23545 -3.5 -3.0 gamma-glutamyl kinase compare
PS417_24745 -3.5 -2.8 gamma-glutamyl phosphate reductase compare
PS417_27195 -2.9 -1.6 N-acetylglutamate synthase compare
PS417_01915 -2.9 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_00180 -2.8 -3.2 tryptophan synthase subunit alpha compare
PS417_22445 -2.7 -4.4 ATP-dependent DNA helicase RuvB compare
PS417_02485 -2.7 -4.8 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_12855 -2.5 -4.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_03100 -2.5 -1.3 pilus assembly protein compare
PS417_20785 -2.4 -3.6 transcriptional regulator compare
PS417_19955 -2.3 -2.1 hypothetical protein compare
PS417_26420 -2.3 -1.4 hypothetical protein compare
PS417_08135 -2.2 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_11400 -2.2 -2.1 phosphoglycerate mutase compare
PS417_21480 -2.2 -1.7 23S rRNA pseudouridylate synthase compare
PS417_07615 -2.2 -5.8 TetR family transcriptional regulator compare
PS417_23025 -2.1 -5.6 murein transglycosylase compare
PS417_16490 -2.1 -1.8 cell division protein FtsK compare
PS417_23775 -2.0 -2.6 exodeoxyribonuclease V subunit beta compare
PS417_25710 -2.0 -1.6 indole-3-glycerol-phosphate synthase compare
PS417_02975 -2.0 -3.9 3-dehydroquinate dehydratase compare
PS417_26985 -2.0 -6.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_02415 -2.0 -3.8 phosphoserine phosphatase compare
PS417_04650 -1.9 -0.7 D-alanine--D-alanine ligase compare
PS417_01580 -1.9 -1.6 imidazole glycerol phosphate synthase compare
PS417_21575 -1.9 -6.1 chemotaxis protein compare
PS417_01565 -1.9 -5.7 imidazole glycerol phosphate synthase compare
PS417_16005 -1.9 -3.2 ATPase compare
PS417_16370 -1.9 -6.0 chemotaxis protein CheY compare
PS417_23810 -1.9 -9.2 acetolactate synthase 3 catalytic subunit compare
PS417_27040 -1.8 -1.7 3-phosphoglycerate dehydrogenase compare
PS417_19665 -1.8 -2.8 flagellar motor protein MotD compare
PS417_06680 -1.8 -7.1 nuclease PIN compare
PS417_08025 -1.8 -1.4 acetylornithine aminotransferase compare
PS417_02475 -1.8 -2.1 N-acetylmuramoyl-L-alanine amidase compare
PS417_20985 -1.8 -1.2 porin compare
PS417_04385 -1.8 -3.0 organic solvent ABC transporter substrate-binding protein compare
PS417_18595 -1.8 -4.2 3-isopropylmalate dehydratase compare
PS417_12870 -1.8 -2.2 enoyl-CoA hydratase compare
PS417_06200 -1.8 -5.3 protein-PII uridylyltransferase compare
PS417_19605 -1.8 -1.0 hypothetical protein compare
PS417_01855 -1.8 -2.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_27865 -1.8 -2.4 LysR family transcriptional regulator compare
PS417_23380 -1.8 -2.4 cytochrome o ubiquinol oxidase subunit III compare
PS417_27640 -1.8 -1.2 TetR family transcriptional regulator compare
PS417_18545 -1.8 -3.1 cell division protein compare
PS417_07170 -1.8 -3.9 hypothetical protein compare
PS417_23995 -1.7 -0.8 preprotein translocase subunit SecG compare
PS417_24710 -1.7 -7.1 lipoprotein compare
PS417_21125 -1.7 -5.6 phosphoadenosine phosphosulfate reductase compare
PS417_02000 -1.7 -9.0 glutamate synthase compare
PS417_10720 -1.7 -8.6 chemotaxis protein CheY compare
PS417_01850 -1.7 -3.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_19350 -1.7 -3.8 GTP cyclohydrolase compare
PS417_22795 -1.6 -1.8 exclusion suppressor FxsA compare
PS417_12805 -1.6 -7.5 glycogen branching protein compare
PS417_18600 -1.6 -2.7 isopropylmalate isomerase compare
PS417_08155 -1.6 -1.1 integration host factor subunit beta compare
PS417_08250 -1.6 -2.5 competence protein ComEA compare
PS417_14065 -1.6 -3.3 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_18585 -1.6 -4.3 3-isopropylmalate dehydrogenase compare
PS417_24525 -1.6 -2.6 nuclease compare
PS417_23950 -1.6 -1.7 polynucleotide phosphorylase/polyadenylase compare
PS417_22450 -1.6 -1.2 ATP-dependent DNA helicase RuvA compare
PS417_24370 -1.6 -0.8 (2Fe-2S)-binding protein compare
PS417_19650 -1.6 -4.4 chemotaxis protein CheW compare
PS417_08125 -1.6 -0.6 prephenate dehydratase compare
PS417_26990 -1.5 -0.8 RNA pyrophosphohydrolase compare
PS417_17215 -1.5 -1.3 peptidylprolyl isomerase compare
PS417_08540 -1.5 -2.0 RNA helicase compare
PS417_02555 -1.5 -9.2 exoribonuclease R compare
PS417_04475 -1.5 -4.3 hypothetical protein compare
PS417_04050 -1.5 -1.8 peptide ABC transporter ATP-binding protein compare
PS417_00185 -1.5 -2.8 tryptophan synthase subunit beta compare
PS417_27835 -1.5 -5.4 endoribonuclease compare
PS417_09325 -1.5 -3.2 peptidase S41 compare
PS417_22565 -1.5 -0.7 formyltetrahydrofolate deformylase compare
PS417_07565 -1.5 -2.1 hypothetical protein compare
PS417_23390 -1.4 -4.8 ubiquinol oxidase subunit II compare
PS417_19675 -1.4 -4.5 chemotaxis protein CheY compare
PS417_19885 -1.4 -2.1 flagellar basal body rod protein FlgG compare
PS417_06205 -1.4 -7.2 methionine aminopeptidase compare
PS417_15285 -1.4 -1.0 type VI secretion protein compare
PS417_27800 -1.4 -1.9 exodeoxyribonuclease III compare
PS417_07165 -1.4 -3.5 dihydrodipicolinate synthase compare
PS417_06540 -1.4 -0.9 membrane protein compare
PS417_02560 -1.4 -1.9 23S rRNA methyltransferase compare
PS417_13510 -1.4 -1.0 polyketide cyclase compare
PS417_19705 -1.4 -2.0 flagellar biosynthesis regulator FlhF compare
PS417_05010 -1.4 -1.8 IclR family transcriptional regulator compare
PS417_08170 -1.4 -7.4 capsular biosynthesis protein compare
PS417_23805 -1.4 -3.9 acetolactate synthase 3 regulatory subunit compare
PS417_08090 -1.3 -0.7 3-oxoacyl-ACP reductase compare
PS417_22050 -1.3 -4.0 ribonuclease BN compare
PS417_19655 -1.3 -2.9 chemotaxis protein CheW compare
PS417_07140 -1.3 -3.2 peptidase M48 compare
PS417_23170 -1.3 -1.5 FeS assembly protein IscX compare
PS417_19660 -1.3 -6.0 cobalamin biosynthesis protein CobQ compare
PS417_08230 -1.3 -1.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_01030 -1.3 -1.4 glutamine ABC transporter substrate-binding protein compare
PS417_26695 -1.3 -1.2 uracil phosphoribosyltransferase compare
PS417_24085 -1.3 -2.1 protein RnfH compare
PS417_23385 -1.2 -5.9 cytochrome o ubiquinol oxidase subunit I compare
PS417_04420 -1.2 -6.2 histidinol dehydrogenase compare
PS417_23915 -1.2 -2.4 pantoate--beta-alanine ligase compare
PS417_01635 -1.2 -4.4 nitrogen regulation protein NR(I) compare
PS417_19850 -1.2 -6.3 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_23375 -1.2 -1.6 cytochrome C oxidase compare
PS417_03260 -1.2 -1.1 5S ribosomal RNA compare
PS417_24585 -1.2 -6.7 AMP nucleosidase compare
PS417_12310 -1.2 -5.3 methionine synthase compare
PS417_02005 -1.2 -6.6 glutamate synthase compare
PS417_00755 -1.2 -0.5 biofilm PGA synthesis protein PgaD compare
PS417_26295 -1.2 -2.2 gamma-butyrobetaine dioxygenase compare
PS417_23475 -1.2 -1.2 hypothetical protein compare
PS417_06145 -1.2 -0.8 hypothetical protein compare
PS417_03045 -1.2 -1.2 hypothetical protein compare
PS417_02510 -1.2 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_09245 -1.2 -1.3 recombinase RdgC compare
PS417_11585 -1.2 -1.9 LuxR family transcriptional regulator compare
PS417_18370 -1.1 -1.9 hypothetical protein compare
PS417_19690 -1.1 -4.5 histidine kinase compare
PS417_18540 -1.1 -4.1 colicin V production CvpA compare
PS417_27135 -1.1 -0.5 glutamine synthetase compare
PS417_12935 -1.1 -2.6 RNA polymerase sigma factor compare
PS417_20705 -1.1 -2.4 cbb3-type cytochrome c oxidase subunit II compare
PS417_03560 -1.1 -1.1 GTP-binding protein compare
PS417_27490 -1.1 -1.9 hypothetical protein compare
PS417_04375 -1.1 -1.4 ABC transporter ATP-binding protein compare
PS417_21430 -1.1 -1.2 3-oxoacyl-ACP synthase compare
PS417_28515 -1.1 -2.4 16S rRNA methyltransferase compare
PS417_21630 -1.1 -1.4 magnesium transporter compare
PS417_13870 -1.1 -3.2 hypothetical protein compare
PS417_21710 -1.1 -2.4 Succinylornithine transaminase (EC 2.6.1.81) (from data) compare
PS417_06175 -1.1 -3.4 cysteine sulfinate desulfinase compare
PS417_10265 -1.1 -1.7 peptidase compare
PS417_21035 -1.1 -5.1 multidrug transporter compare
PS417_18530 -1.1 -4.6 O-succinylhomoserine sulfhydrylase compare
PS417_18560 -1.1 -3.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_18455 -1.1 -2.0 hypothetical protein compare
PS417_27425 -1.1 -4.4 exopolyphosphatase compare
PS417_23800 -1.1 -6.1 ketol-acid reductoisomerase compare
PS417_12005 -1.1 -2.6 hypothetical protein compare
PS417_12325 -1.1 -1.7 precorrin-4 C11-methyltransferase compare
PS417_05815 -1.0 -2.1 recombinase RecA compare
PS417_27585 -1.0 -1.2 diaminopimelate epimerase compare
PS417_06530 -1.0 -1.2 membrane protein compare
PS417_24800 -1.0 -2.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_07470 -1.0 -0.9 hypothetical protein compare
PS417_20125 -1.0 -2.2 phosphoribosylglycinamide formyltransferase compare
PS417_27945 -1.0 -1.2 type VI secretion protein ImpA compare
PS417_28070 -1.0 -4.2 phosphate ABC transporter ATP-binding protein compare
PS417_24560 -1.0 -1.8 ferrous iron transporter compare
PS417_19835 -1.0 -1.2 flagellar biosynthesis protein FliS compare
PS417_26370 -1.0 -2.6 RNA helicase compare
PS417_02045 -1.0 -1.8 3-oxoacyl-ACP synthase compare
PS417_07710 -1.0 -3.2 membrane protein compare
PS417_17945 -1.0 -0.7 hypothetical protein compare
PS417_01560 -1.0 -1.4 imidazoleglycerol-phosphate dehydratase compare
PS417_25315 -1.0 -2.4 membrane protein compare
PS417_17305 -1.0 -1.2 hypothetical protein compare
PS417_01640 -1.0 -4.2 histidine kinase compare
PS417_05885 -1.0 -3.9 potassium transporter Kup compare
PS417_02845 -1.0 -2.3 ABC transporter permease compare
PS417_26745 -1.0 -3.8 methionine biosynthesis protein MetW compare
PS417_00085 -1.0 -1.3 16S rRNA methyltransferase compare
PS417_12380 -1.0 -3.1 peptidase S54 compare
PS417_01285 -1.0 -1.3 haloacid dehalogenase compare
PS417_26645 -1.0 -1.6 chemotaxis protein compare
PS417_06880 -1.0 -3.8 RNA polymerase sigma factor compare
PS417_04500 -1.0 -0.9 hypothetical protein compare
PS417_01995 -1.0 -1.9 hypothetical protein compare
PS417_01425 -1.0 -2.3 AraC family transcriptional regulator compare
PS417_04365 -1.0 -0.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_02270 -1.0 -3.3 carbamoyltransferase compare
PS417_06025 -1.0 -1.7 alpha/beta hydrolase compare
PS417_25725 -1.0 -7.3 anthranilate synthase component I compare
PS417_19720 -1.0 -1.1 DNA-binding protein compare
PS417_26995 -1.0 -4.8 phosphoserine phosphatase compare
PS417_10185 -1.0 -2.5 hypothetical protein compare
PS417_25705 -1.0 -2.3 lipoate--protein ligase compare
PS417_26725 -1.0 -2.4 hypothetical protein compare
PS417_23615 -1.0 -2.1 sulfate transporter compare
PS417_22275 -1.0 -3.6 phosphoesterase compare
PS417_21510 -0.9 -0.9 histidine kinase compare
PS417_10995 -0.9 -1.7 GntR family transcriptional regulator compare
PS417_23770 -0.9 -0.8 exodeoxyribonuclease V subunit alpha compare
PS417_06685 -0.9 -0.6 beta-ketoadipyl CoA thiolase compare
PS417_22350 -0.9 -1.6 Fis family transcriptional regulator compare
PS417_27300 -0.9 -0.6 cell division protein ZapA compare
PS417_23900 -0.9 -4.2 poly(A) polymerase compare
PS417_07700 -0.9 -1.8 chromosome partitioning protein ParA compare
PS417_01795 -0.9 -4.6 glucosyltransferase MdoH compare
PS417_23825 -0.9 -4.2 penicillin-binding protein compare
PS417_03165 -0.9 -2.6 hypothetical protein compare
PS417_06895 -0.9 -2.2 DNA-binding protein compare
PS417_26760 -0.9 -3.3 oxidase compare
PS417_24380 -0.9 -2.8 guanine permease compare


Specific Phenotypes

For 1 genes in this experiment

For motility_chemotaxis Method=Plug_approach; Chemical=L-Glutamic acid monopotassium salt monohydrate; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 in Pseudomonas simiae WCS417

For motility_chemotaxis Method=Plug_approach; Chemical=L-Glutamic acid monopotassium salt monohydrate; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 across organisms