Experiment set17IT051 for Pseudomonas stutzeri RCH2

Compare to:

LB with Carbenicillin disodium salt 0.0065 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_4103 -5.2 -2.0 AraC-type DNA-binding domain-containing proteins compare
Psest_1496 -4.2 -1.6 Holliday junction DNA helicase, RuvA subunit compare
Psest_2945 -3.4 -1.7 septum site-determining protein MinC compare
Psest_0311 -3.4 -8.0 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_0310 -3.3 -3.2 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2304 -3.2 -1.2 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0309 -3.1 -1.5 RND family efflux transporter, MFP subunit compare
Psest_2581 -3.1 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_2229 -3.0 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_0725 -2.8 -2.3 Negative regulator of beta-lactamase expression compare
Psest_0191 -2.8 -0.9 PAS domain S-box compare
Psest_0514 -2.6 -7.3 lytic murein transglycosylase B compare
Psest_0498 -2.5 -1.7 ribosome small subunit-dependent GTPase A compare
Psest_4219 -2.5 -3.3 DNA polymerase I compare
Psest_4274 -2.4 -3.0 hypothetical protein compare
Psest_3377 -2.4 -1.2 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1725 -2.4 -8.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3173 -2.4 -5.1 Uncharacterized protein conserved in bacteria compare
Psest_2585 -2.3 -1.0 pseudouridylate synthase I compare
Psest_1814 -2.2 -15.6 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2850 -2.2 -1.4 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_0259 -2.2 -1.4 cell division ATP-binding protein FtsE compare
Psest_0192 -2.2 -6.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3031 -2.2 -0.8 hypothetical protein compare
Psest_0115 -2.1 -1.4 Predicted integral membrane protein compare
Psest_0515 -2.0 -4.3 rare lipoprotein A compare
Psest_3531 -2.0 -1.5 Peptidase propeptide and YPEB domain. compare
Psest_3351 -2.0 -6.1 peptide chain release factor 3 compare
Psest_1305 -2.0 -3.6 Heat shock protein compare
Psest_1510 -2.0 -2.7 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0708 -2.0 -1.5 outer membrane assembly lipoprotein YfiO compare
Psest_0442 -1.9 -2.3 ATPases of the AAA+ class compare
Psest_2083 -1.9 -5.5 Putative sterol carrier protein compare
Psest_3395 -1.9 -1.1 hypothetical protein compare
Psest_3963 -1.9 -9.9 PAS domain S-box compare
Psest_4142 -1.9 -1.5 hypothetical protein compare
Psest_0521 -1.8 -8.7 lytic murein transglycosylase compare
Psest_1516 -1.8 -2.3 Uncharacterized lipoprotein compare
Psest_2527 -1.8 -6.1 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_4098 -1.8 -3.0 Superfamily I DNA and RNA helicases compare
Psest_0959 -1.8 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_0538 -1.8 -14.9 Signal transduction histidine kinase compare
Psest_3322 -1.7 -11.9 TIGR02099 family protein compare
Psest_1167 -1.7 -0.9 hypothetical protein compare
Psest_2285 -1.7 -3.4 ATP-dependent protease La compare
Psest_2530 -1.7 -4.4 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_1227 -1.7 -3.2 Predicted SAM-dependent methyltransferase compare
Psest_0759 -1.7 -1.4 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_2946 -1.7 -3.1 septum site-determining protein MinD compare
Psest_0558 -1.6 -0.8 urease, beta subunit compare
Psest_1611 -1.6 -4.9 Beta-lactamase class D conserved
Psest_2001 -1.6 -1.0 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_3212 -1.6 -3.5 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_0325 -1.6 -6.7 Putative threonine efflux protein compare
Psest_0417 -1.6 -2.1 Acyl-CoA dehydrogenases compare
Psest_1752 -1.6 -1.5 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_3301 -1.5 -1.8 Predicted transcriptional regulator, BolA superfamily compare
Psest_3100 -1.5 -1.1 RNA polymerase sigma factor RpoE compare
Psest_3129 -1.5 -1.1 tyrosine recombinase XerD compare
Psest_2872 -1.5 -1.5 protein RecA compare
Psest_4343 -1.5 -2.0 Protein of unknown function (DUF3301). compare
Psest_0401 -1.5 -1.6 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_2764 -1.5 -1.2 hypothetical protein compare
Psest_0744 -1.5 -0.9 Uncharacterized conserved protein compare
Psest_1008 -1.5 -1.0 hypothetical protein compare
Psest_3146 -1.5 -1.4 hypothetical protein compare
Psest_0722 -1.5 -6.5 Predicted ATPase compare
Psest_1679 -1.4 -1.4 ribonuclease, Rne/Rng family compare
Psest_3128 -1.4 -3.2 Protein-disulfide isomerase compare
Psest_0028 -1.4 -3.5 Coproporphyrinogen III oxidase compare
Psest_0487 -1.4 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_3860 -1.4 -2.2 Predicted permeases compare
Psest_3790 -1.4 -7.3 Cytochrome c5 compare
Psest_3998 -1.4 -4.8 glutamate--cysteine ligase compare
Psest_0697 -1.4 -2.3 ribosomal protein L9 compare
Psest_2531 -1.4 -8.4 cytochrome c oxidase accessory protein FixG compare
Psest_1804 -1.4 -2.0 Superfamily II DNA and RNA helicases compare
Psest_1986 -1.4 -1.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_0312 -1.3 -4.4 Superfamily II DNA and RNA helicases compare
Psest_0013 -1.3 -4.2 Lauroyl/myristoyl acyltransferase compare
Psest_1837 -1.3 -4.3 Endoglucanase compare
Psest_3554 -1.3 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_4044 -1.3 -2.0 type I site-specific deoxyribonuclease, HsdR family compare
Psest_2023 -1.3 -2.5 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_0031 -1.3 -1.4 Uncharacterized conserved protein compare
Psest_0867 -1.3 -1.6 hypothetical protein compare
Psest_0716 -1.3 -1.7 Protein of unknown function (DUF3094). compare
Psest_2067 -1.3 -0.9 ABC-type oligopeptide transport system, periplasmic component compare
Psest_1950 -1.3 -8.0 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family conserved
Psest_2648 -1.3 -1.7 hypothetical protein compare
Psest_1595 -1.3 -1.0 Copper chaperone compare
Psest_0189 -1.3 -4.7 Negative regulator of beta-lactamase expression conserved
Psest_1388 -1.3 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_2555 -1.3 -6.3 hypothetical protein compare
Psest_1504 -1.3 -2.9 tol-pal system protein YbgF compare
Psest_3910 -1.3 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_1920 -1.2 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_2981 -1.2 -1.4 sodium pump decarboxylases, gamma subunit compare
Psest_1013 -1.2 -2.9 phosphoribosylamine--glycine ligase compare
Psest_3123 -1.2 -1.8 dihydroorotase, homodimeric type compare
Psest_3419 -1.2 -5.1 Predicted transcriptional regulators compare
Psest_3115 -1.2 -4.8 electron transport complex, RnfABCDGE type, D subunit compare
Psest_3973 -1.2 -1.0 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_2130 -1.2 -2.3 exodeoxyribonuclease III compare
Psest_4152 -1.2 -3.3 flagellar basal-body rod protein FlgC compare
Psest_1103 -1.2 -2.2 GTP-binding protein YchF compare
Psest_0987 -1.2 -1.5 Predicted periplasmic or secreted lipoprotein compare
Psest_2114 -1.1 -3.7 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3117 -1.1 -2.2 electron transport complex, RnfABCDGE type, E subunit compare
Psest_0717 -1.1 -7.1 Protein of unknown function (DUF1631). compare
Psest_4405 -1.1 -1.1 hypothetical protein compare
Psest_0196 -1.1 -7.2 Uncharacterized membrane protein, required for spore maturation in B.subtilis. conserved
Psest_3458 -1.1 -2.2 hypothetical protein compare
Psest_0632 -1.1 -2.6 hypothetical protein compare
Psest_3113 -1.1 -1.3 electron transport complex, RnfABCDGE type, B subunit compare
Psest_2260 -1.1 -8.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1635 -1.1 -8.7 Signal transduction histidine kinase compare
Psest_4350 -1.1 -2.8 Transcriptional regulators of sugar metabolism compare
Psest_2101 -1.1 -1.2 hypothetical protein compare
Psest_1349 -1.1 -1.6 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_4008 -1.1 -6.5 PAS domain S-box compare
Psest_3270 -1.1 -1.0 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_3954 -1.1 -2.1 Small protein A (tmRNA-binding) compare
Psest_4178 -1.1 -1.7 hypothetical protein compare
Psest_2953 -1.1 -1.2 Histone acetyltransferase compare
Psest_3189 -1.1 -2.3 hypothetical protein compare
Psest_1902 -1.0 -2.6 hypothetical protein compare
Psest_3882 -1.0 -5.7 Opacity protein and related surface antigens compare
Psest_0164 -1.0 -0.6 Glutaredoxin, GrxC family compare
Psest_3762 -1.0 -3.4 iron donor protein CyaY compare
Psest_1974 -1.0 -1.7 integration host factor, alpha subunit compare
Psest_4273 -1.0 -4.0 Lysophospholipase compare
Psest_3292 -1.0 -2.5 hypothetical protein compare
Psest_0732 -1.0 -2.7 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_3770 -1.0 -4.2 secondary thiamine-phosphate synthase enzyme compare
Psest_1567 -1.0 -2.2 Transcriptional regulator compare
Psest_0277 -1.0 -0.8 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_4158 -1.0 -1.9 Flagellar motor protein compare
Psest_2766 -1.0 -0.7 hypothetical protein compare
Psest_4043 -1.0 -1.8 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_0030 -1.0 -2.0 Putative NADH-flavin reductase compare
Psest_2561 -1.0 -0.6 hypothetical protein compare
Psest_3456 -1.0 -1.3 RNA polymerase sigma factor, sigma-70 family compare
Psest_1535 -1.0 -2.4 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
Psest_3810 -1.0 -0.7 orotate phosphoribosyltransferase compare
Psest_0119 -1.0 -1.4 hypothetical protein compare
Psest_4280 -1.0 -2.0 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_1704 -1.0 -0.8 Dehydrogenases (flavoproteins) compare
Psest_4382 -1.0 -6.7 hypothetical protein compare
Psest_2724 -1.0 -1.8 hypothetical protein compare
Psest_2520 -1.0 -1.1 Predicted SAM-dependent methyltransferase compare
Psest_3159 -1.0 -3.8 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3114 -1.0 -3.8 electron transport complex, RnfABCDGE type, C subunit compare
Psest_3735 -1.0 -1.3 uncharacterized domain 1 compare
Psest_3188 -1.0 -2.8 hypothetical protein compare
Psest_0999 -1.0 -1.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0061 -1.0 -1.7 hypothetical protein compare
Psest_0020 -0.9 -2.1 K+ transport systems, NAD-binding component compare
Psest_0014 -0.9 -2.4 PilZ domain. compare
Psest_0357 -0.9 -2.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1947 -0.9 -0.6 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_3343 -0.9 -1.9 Predicted periplasmic protein compare
Psest_3545 -0.9 -2.9 clan AA aspartic protease, TIGR02281 family compare
Psest_3688 -0.9 -4.7 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Psest_2975 -0.9 -1.4 tRNA_Arg_CCT compare
Psest_1295 -0.9 -3.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3180 -0.9 -4.4 Exonuclease I compare
Psest_1923 -0.9 -3.1 adhesin-associated BNR repeat protein (from data) compare
Psest_3752 -0.9 -2.8 hypothetical protein compare
Psest_2594 -0.9 -2.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3070 -0.9 -1.0 3-oxoadipyl-CoA thiolase compare
Psest_2773 -0.9 -3.8 glycerol kinase compare
Psest_3761 -0.9 -1.2 Transcription elongation factor compare
Psest_1395 -0.9 -1.7 Short-chain alcohol dehydrogenase of unknown specificity compare
Psest_0078 -0.9 -0.8 hypothetical protein compare
Psest_2718 -0.9 -0.7 hypothetical protein compare
Psest_0678 -0.9 -1.4 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_3168 -0.9 -1.2 Molybdopterin converting factor, large subunit compare
Psest_4009 -0.9 -1.9 conserverd hypothetical protein compare
Psest_3112 -0.9 -2.4 electron transport complex, RnfABCDGE type, A subunit compare
Psest_1657 -0.9 -1.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_2532 -0.9 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_2486 -0.9 -2.5 Uncharacterized protein, possibly involved in aromatic compounds catabolism compare
Psest_2090 -0.9 -1.4 Protein of unknown function (DUF2970). compare
Psest_1354 -0.9 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_0385 -0.9 -1.5 Conserved secreted protein compare
Psest_2551 -0.8 -5.0 1-aminocyclopropane-1-carboxylate deaminase compare
Psest_0662 -0.8 -1.3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1466 -0.8 -1.9 transcriptional regulator, Spx/MgsR family compare
Psest_0161 -0.8 -1.1 Membrane-bound metallopeptidase compare
Psest_3878 -0.8 -2.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3389 -0.8 -2.0 hypothetical protein compare
Psest_3772 -0.8 -2.4 ammonium transporter compare
Psest_3092 -0.8 -0.9 ribonuclease III, bacterial compare
Psest_2044 -0.8 -2.0 ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system compare
Psest_1625 -0.8 -1.7 hypothetical protein compare
Psest_3692 -0.8 -2.4 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_3477 -0.8 -1.8 Signal transduction histidine kinase compare
Psest_0082 -0.8 -1.6 Domain of unknown function (DUF892). compare
Psest_2976 -0.8 -0.7 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For stress Carbenicillin disodium salt in Pseudomonas stutzeri RCH2

For stress Carbenicillin disodium salt across organisms