Experiment set17IT042 for Pseudomonas stutzeri RCH2

Compare to:

LB with Thallium(I) acetate 0.09 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_0623 -5.0 -15.7 Arsenite efflux pump ACR3 and related permeases conserved
Psest_1809 -4.4 -14.9 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_1814 -4.0 -20.6 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3860 -3.8 -3.5 Predicted permeases compare
Psest_2945 -3.4 -2.0 septum site-determining protein MinC compare
Psest_0028 -3.2 -5.3 Coproporphyrinogen III oxidase compare
Psest_2025 -3.2 -1.2 cold shock domain protein CspD compare
Psest_3960 -3.1 -1.9 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0725 -2.7 -2.5 Negative regulator of beta-lactamase expression compare
Psest_2566 -2.6 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_1510 -2.5 -2.4 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3850 -2.5 -0.9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1306 -2.4 -2.3 hypothetical protein compare
Psest_2946 -2.4 -2.3 septum site-determining protein MinD compare
Psest_0516 -2.4 -10.2 D-alanyl-D-alanine carboxypeptidase compare
Psest_4010 -2.3 -1.5 peroxiredoxin, OsmC subfamily compare
Psest_0514 -2.3 -6.4 lytic murein transglycosylase B compare
Psest_1661 -2.3 -1.6 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_0225 -2.2 -3.0 Predicted permease, DMT superfamily compare
Psest_3938 -2.1 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_2855 -2.0 -1.7 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_2613 -2.0 -1.5 hypothetical protein compare
Psest_3236 -1.9 -3.5 hypothetical protein compare
Psest_0310 -1.9 -3.2 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_3351 -1.8 -5.7 peptide chain release factor 3 compare
Psest_3247 -1.8 -1.7 Uncharacterized membrane protein compare
Psest_0186 -1.8 -4.3 Protein-disulfide isomerase compare
Psest_3042 -1.7 -1.3 Nitrate reductase cytochrome c-type subunit compare
Psest_3546 -1.7 -0.9 Phosphatidylglycerophosphatase A and related proteins compare
Psest_1692 -1.7 -6.9 conserved hypothetical protein, YceG family compare
Psest_4298 -1.7 -1.0 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_0031 -1.7 -1.6 Uncharacterized conserved protein compare
Psest_0515 -1.6 -3.9 rare lipoprotein A compare
Psest_3399 -1.6 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_0013 -1.6 -4.2 Lauroyl/myristoyl acyltransferase compare
Psest_2304 -1.6 -1.1 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0259 -1.6 -1.1 cell division ATP-binding protein FtsE compare
Psest_3270 -1.6 -2.0 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_0958 -1.5 -5.8 Oligoketide cyclase/lipid transport protein compare
Psest_0845 -1.5 -0.9 hypothetical protein compare
Psest_3080 -1.5 -1.5 AraC-type DNA-binding domain-containing proteins compare
Psest_4128 -1.5 -1.5 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1230 -1.4 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_0842 -1.4 -1.9 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_3697 -1.4 -2.3 Outer membrane lipoprotein carrier protein LolA. compare
Psest_2648 -1.4 -2.0 hypothetical protein compare
Psest_1657 -1.4 -1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_3322 -1.3 -9.6 TIGR02099 family protein compare
Psest_0191 -1.3 -0.8 PAS domain S-box compare
Psest_2243 -1.3 -0.6 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_2778 -1.3 -2.2 Parvulin-like peptidyl-prolyl isomerase compare
Psest_0998 -1.3 -2.4 poly(A) polymerase compare
Psest_3761 -1.3 -2.2 Transcription elongation factor compare
Psest_3447 -1.3 -1.2 Uncharacterized MobA-related protein compare
Psest_3100 -1.3 -1.5 RNA polymerase sigma factor RpoE compare
Psest_2001 -1.3 -1.2 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_0485 -1.3 -2.9 clan AA aspartic protease, TIGR02281 family compare
Psest_3458 -1.3 -3.1 hypothetical protein compare
Psest_0498 -1.3 -1.3 ribosome small subunit-dependent GTPase A compare
Psest_2637 -1.3 -1.0 putative methyltransferase, YaeB/AF_0241 family compare
Psest_3316 -1.3 -4.8 Predicted P-loop-containing kinase compare
Psest_2764 -1.2 -1.0 hypothetical protein compare
Psest_0097 -1.2 -1.6 phosphonates metabolism transcriptional regulator PhnF compare
Psest_3047 -1.2 -0.8 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_3301 -1.2 -2.1 Predicted transcriptional regulator, BolA superfamily compare
Psest_2253 -1.2 -1.8 small redox-active disulfide protein 2 compare
Psest_1656 -1.2 -1.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_1905 -1.2 -2.2 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_2424 -1.2 -1.3 K+ transport systems, NAD-binding component compare
Psest_2048 -1.2 -1.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0316 -1.2 -2.0 Cytochrome c556 compare
Psest_1709 -1.2 -2.3 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3123 -1.2 -1.7 dihydroorotase, homodimeric type compare
Psest_2504 -1.2 -3.8 flagellar biosynthetic protein FliS compare
Psest_2981 -1.2 -1.5 sodium pump decarboxylases, gamma subunit compare
Psest_4310 -1.2 -1.3 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_3767 -1.1 -3.3 tyrosine recombinase XerC compare
Psest_2285 -1.1 -2.7 ATP-dependent protease La compare
Psest_1813 -1.1 -4.5 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_4044 -1.1 -2.0 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0172 -1.1 -3.8 Uncharacterized protein conserved in bacteria compare
Psest_4338 -1.1 -3.2 Fe2+-dicitrate sensor, membrane component compare
Psest_0133 -1.1 -1.2 type VI secretion protein, VC_A0107 family compare
Psest_0067 -1.1 -1.4 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_4252 -1.1 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_1185 -1.1 -2.5 heavy metal response regulator compare
Psest_2719 -1.1 -1.0 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_1013 -1.1 -2.3 phosphoribosylamine--glycine ligase compare
Psest_0442 -1.1 -2.4 ATPases of the AAA+ class compare
Psest_1951 -1.1 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_3014 -1.1 -1.3 cob(I)alamin adenosyltransferase compare
Psest_2773 -1.0 -3.9 glycerol kinase compare
Psest_3092 -1.0 -1.1 ribonuclease III, bacterial compare
Psest_2104 -1.0 -1.0 IscR-regulated protein YhgI compare
Psest_2892 -1.0 -1.3 Transcriptional regulator compare
Psest_1012 -1.0 -2.7 Signal transduction histidine kinase compare
Psest_1242 -1.0 -1.9 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_3784 -1.0 -2.2 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_3212 -1.0 -1.6 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_4256 -1.0 -1.8 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0030 -1.0 -1.5 Putative NADH-flavin reductase compare
Psest_1947 -1.0 -0.7 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_3878 -1.0 -1.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3749 -1.0 -6.1 Response regulator of the LytR/AlgR family compare
Psest_1783 -1.0 -1.7 Predicted transporter component compare
Psest_3962 -1.0 -1.0 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_3295 -1.0 -1.7 dinuclear metal center protein, YbgI/SA1388 family compare
Psest_1259 -1.0 -3.8 23S rRNA m2A2503 methyltransferase compare
Psest_4056 -1.0 -1.8 FMN reductase, SsuE family compare
Psest_1600 -1.0 -1.5 hypothetical protein compare
Psest_1986 -1.0 -1.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_1498 -1.0 -1.4 tol-pal system-associated acyl-CoA thioesterase compare
Psest_2448 -0.9 -2.6 AraC-type DNA-binding domain-containing proteins compare
Psest_4343 -0.9 -1.9 Protein of unknown function (DUF3301). compare
Psest_1563 -0.9 -2.0 Protein of unknown function (DUF548). compare
Psest_2733 -0.9 -2.3 Uncharacterized protein conserved in bacteria (DUF2188). compare
Psest_0740 -0.9 -1.4 Transcriptional regulator compare
Psest_3145 -0.9 -0.9 hypothetical protein compare
Psest_3181 -0.9 -3.3 Predicted membrane protein/domain compare
Psest_1305 -0.9 -1.8 Heat shock protein compare
Psest_3398 -0.9 -1.7 large conductance mechanosensitive channel protein compare
Psest_1636 -0.9 -2.1 putative transporter, required for glycine utilization (from data) compare
Psest_3391 -0.9 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_3128 -0.9 -2.0 Protein-disulfide isomerase compare
Psest_3146 -0.9 -1.1 hypothetical protein compare
Psest_1612 -0.9 -2.4 ABC-type multidrug transport system, ATPase component compare
Psest_0083 -0.9 -1.8 Uncharacterized conserved protein compare
Psest_4397 -0.9 -4.2 hypothetical protein compare
Psest_1659 -0.9 -1.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1479 -0.9 -2.8 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_0212 -0.9 -1.6 exodeoxyribonuclease V, gamma subunit compare
Psest_2872 -0.9 -1.3 protein RecA compare
Psest_1881 -0.9 -1.9 Nitroreductase compare
Psest_1319 -0.9 -2.9 ABC-type phosphate/phosphonate transport system, ATPase component compare
Psest_0309 -0.9 -0.7 RND family efflux transporter, MFP subunit compare
Psest_3435 -0.9 -3.5 hypothetical protein compare
Psest_1295 -0.9 -2.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0277 -0.9 -0.9 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_3005 -0.9 -2.0 Fructose-2,6-bisphosphatase compare
Psest_3754 -0.8 -1.5 Uncharacterized protein involved in response to NO compare
Psest_1149 -0.8 -1.7 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_2718 -0.8 -0.8 hypothetical protein compare
Psest_2427 -0.8 -4.4 SH3 domain protein compare
Psest_4099 -0.8 -5.6 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component compare
Psest_0155 -0.8 -2.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_4325 -0.8 -1.3 hypothetical protein compare
Psest_2413 -0.8 -2.9 Periplasmic protein TonB, links inner and outer membranes compare
Psest_1471 -0.8 -2.0 Predicted membrane protein compare
Psest_3226 -0.8 -0.7 Predicted membrane protein compare
Psest_0822 -0.8 -2.2 Transcriptional regulators compare
Psest_0534 -0.8 -2.0 hypothetical protein compare
Psest_3707 -0.8 -1.6 Transcriptional regulator compare
Psest_1728 -0.8 -2.5 Flagellar basal body-associated protein compare
Psest_0691 -0.8 -5.4 ribonuclease R compare
Psest_0508 -0.8 -2.8 gamma-glutamyl phosphate reductase compare
Psest_2067 -0.8 -0.8 ABC-type oligopeptide transport system, periplasmic component compare
Psest_2894 -0.8 -1.2 addiction module antidote protein, HigA family compare
Psest_0181 -0.8 -3.1 glycine cleavage system T protein compare
Psest_0161 -0.8 -0.9 Membrane-bound metallopeptidase compare
Psest_0487 -0.8 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_1946 -0.8 -1.9 Protein of unknown function (DUF2835). compare
Psest_1156 -0.8 -3.0 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Psest_1146 -0.8 -2.8 Protein of unknown function, DUF481. compare
Psest_0647 -0.8 -3.5 Arabinose efflux permease compare
Psest_0718 -0.8 -2.4 nicotinate-nucleotide pyrophosphorylase compare
Psest_1999 -0.8 -0.6 pseudouridine synthase compare
Psest_0168 -0.8 -2.9 Uncharacterized conserved protein compare
Psest_2590 -0.8 -0.6 3-isopropylmalate dehydratase, small subunit compare
Psest_2520 -0.8 -1.0 Predicted SAM-dependent methyltransferase compare
Psest_4001 -0.8 -2.4 acetylornithine deacetylase (ArgE) compare
Psest_1087 -0.7 -0.7 uncharacterized peroxidase-related enzyme compare
Psest_0526 -0.7 -2.3 hypothetical protein compare
Psest_4155 -0.7 -1.7 Flagellin and related hook-associated proteins compare
Psest_2901 -0.7 -0.7 hypothetical protein compare
Psest_1878 -0.7 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_0175 -0.7 -2.6 Xaa-Pro aminopeptidase compare
Psest_2585 -0.7 -0.5 pseudouridylate synthase I compare
Psest_3185 -0.7 -0.9 MoxR-like ATPases compare
Psest_0717 -0.7 -5.4 Protein of unknown function (DUF1631). compare
Psest_2975 -0.7 -1.0 tRNA_Arg_CCT compare
Psest_2651 -0.7 -1.6 DNA topoisomerase I, bacterial compare
Psest_3323 -0.7 -2.1 ribonuclease, Rne/Rng family compare
Psest_2973 -0.7 -2.0 Flagellar biosynthesis/type III secretory pathway chaperone compare
Psest_0645 -0.7 -4.4 Siderophore synthetase component compare
Psest_2022 -0.7 -1.3 ADP-ribose pyrophosphatase compare
Psest_0152 -0.7 -2.3 Imidazoleglycerol-phosphate dehydratase compare
Psest_4406 -0.7 -0.8 hypothetical protein compare
Psest_0060 -0.7 -1.0 Predicted Fe-S protein compare
Psest_2933 -0.7 -4.0 Signal transduction histidine kinase compare
Psest_0357 -0.7 -1.5 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3232 -0.7 -3.2 hypothetical protein compare
Psest_1292 -0.7 -3.1 monothiol glutaredoxin, Grx4 family compare
Psest_3156 -0.7 -2.0 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_3230 -0.7 -2.6 Uncharacterized conserved protein compare
Psest_2622 -0.7 -1.8 TadE-like protein. compare
Psest_4197 -0.7 -1.6 general secretion pathway protein J compare
Psest_0006 -0.7 -2.1 alkyl hydroperoxide reductase, F subunit compare
Psest_1472 -0.7 -3.5 Protein of unknown function (DUF3108). compare
Psest_0856 -0.7 -3.4 Predicted oxidoreductase compare
Psest_2225 -0.7 -1.0 Diacylglycerol kinase compare


Specific Phenotypes

For 1 genes in this experiment

For stress Thallium(I) acetate in Pseudomonas stutzeri RCH2

For stress Thallium(I) acetate across organisms