Experiment set17IT028 for Sinorhizobium meliloti 1021

Compare to:

methyl-beta-D-xylopyranoside carbon source

200 most important genes:

  gene name fitness t score description  
SMc04405 -7.6 -5.3 3-isopropylmalate dehydrogenase compare
SMc02899 -7.2 -11.1 prephenate dehydratase compare
SMc02569 -7.2 -5.0 imidazole glycerol phosphate synthase subunit HisF compare
SMc04045 -7.1 -6.9 dihydroxy-acid dehydratase compare
SMc01801 -7.0 -4.7 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc02717 -7.0 -10.6 2-isopropylmalate synthase compare
SMc01004 -6.8 -11.3 phosphoribosyl-AMP cyclohydrolase compare
SMc01843 -6.7 -12.0 5,10-methylenetetrahydrofolate reductase compare
SMc02137 -6.7 -4.6 ornithine carbamoyltransferase compare
SMc00640 -6.6 -7.9 phosphoserine aminotransferase compare
SMc02572 -6.6 -3.2 imidazole glycerol phosphate synthase subunit HisH compare
SMc04026 -6.5 -9.3 glutamate synthase compare
SMc01726 -6.5 -7.6 acetylglutamate kinase compare
SMc02123 -6.5 -4.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc01431 -6.3 -10.6 acetolactate synthase 3 catalytic subunit compare
SMc00917 -6.3 -6.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc00918 -6.2 -9.5 ATP phosphoribosyltransferase regulatory subunit compare
SMc00993 -6.2 -10.3 phosphoribosylamine--glycine ligase compare
SMc01494 -6.0 -9.7 phosphoserine phosphatase compare
SMc00090 -6.0 -10.8 sulfate adenylyltransferase compare
SMc00488 -6.0 -19.7 phosphoribosylformylglycinamidine synthase II compare
SMc00495 -6.0 -5.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc03895 -6.0 -18.4 pyruvate carboxylase compare
SMc00293 -5.9 -14.9 homoserine dehydrogenase compare
SMc03823 -5.8 -11.2 isopropylmalate isomerase large subunit compare
SMc00711 -5.7 -6.2 cyclohexadienyl dehydrogenase compare
SMc00615 -5.7 -15.5 phosphoribosylaminoimidazole synthetase compare
SMc03070 -5.7 -6.8 glucose-6-phosphate 1-dehydrogenase compare
SMc04028 -5.7 -21.9 glutamate synthase compare
SMc00493 -5.6 -7.6 phosphoribosylformylglycinamidine synthase I compare
SMc00131 -5.6 -15.5 transcriptional regulator compare
SMc03797 -5.5 -11.7 homoserine O-succinyltransferase compare
SMc03112 -5.4 -15.9 B12-dependent methionine synthase compare
SMc02124 -5.3 -16.0 nitrite reductase compare
SMc00092 -5.3 -14.1 phosphoadenosine phosphosulfate reductase compare
SMc00614 -5.2 -7.9 phosphoribosylglycinamide formyltransferase compare
SMc04001 -5.1 -2.0 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc00554 -5.1 -9.8 amidophosphoribosyltransferase compare
SMc01054 -5.1 -4.9 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc02469 -5.1 -11.3 oxidoreductase conserved
SMc00494 -5.0 -2.8 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc02570 -5.0 -7.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc02470 -4.9 -4.0 transcriptional regulator conserved
SMc02217 -4.8 -8.4 O-succinylhomoserine sulfhydrylase compare
SMc04088 -4.7 -9.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc00091 -4.7 -13.2 sulfate adenylyltransferase compare
SMc03163 -4.7 -12.9 Xylose isomerase (EC 5.3.1.5) (from data) conserved
SMc00236 -4.6 -3.2 Indole-3-glycerol phosphate synthase compare
SMc02425 -4.6 -4.3 transcriptional regulator compare
SMc03777 -4.6 -9.7 gamma-glutamyl phosphate reductase compare
SMc03776 -4.5 -4.4 gamma-glutamyl kinase compare
SMc02725 -4.5 -6.8 anthranilate synthase compare
SMc02766 -4.5 -5.3 tryptophan synthase subunit beta compare
SMc03164 -4.4 -15.4 Xylulose kinase (EC 2.7.1.17) (from data) conserved
SMc02755 -4.3 -6.5 S-adenosyl-L-homocysteine hydrolase compare
SMc00017 -4.3 -2.3 homoserine kinase compare
SMc02767 -4.2 -5.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc01053 -4.2 -5.1 siroheme synthase compare
SMc00876 -4.2 -7.5 ATP-binding MRP protein compare
SMc00235 -4.2 -2.9 anthranilate phosphoribosyltransferase compare
SMc02468 -4.1 -12.8 hypothetical protein conserved
SMc04002 -4.1 -8.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc03069 -4.1 -3.1 6-phosphogluconolactonase compare
SMc02245 -4.0 -5.5 dihydroorotate dehydrogenase 2 compare
SMc01770 -4.0 -1.7 serine hydroxymethyltransferase compare
SMc00405 -4.0 -12.6 hypothetical protein compare
SMc03979 -4.0 -3.0 glyceraldehyde-3-phosphate dehydrogenase compare
SMa1635 -3.9 -1.5 hypothetical protein compare
SMc01361 -3.9 -2.7 dihydroorotase compare
SMc03161 -3.8 -12.0 oxidoreductase compare
SMc00815 -3.8 -2.5 inosine 5'-monophosphate dehydrogenase compare
SMc02055 -3.7 -3.5 phytoene synthase compare
SMc01360 -3.7 -2.5 aspartate carbamoyltransferase catalytic subunit compare
SMc01880 -3.6 -2.5 pantoate--beta-alanine ligase compare
SMc00641 -3.6 -5.3 D-3-phosphoglycerate dehydrogenase compare
SMc02166 -3.6 -9.7 dihydroorotase compare
SM_b21177 -3.5 -9.2 phosphate uptake ABC transporter ATP-binding protein compare
SMc02138 -3.5 -5.6 acetylornithine transaminase compare
SM_b21174 -3.5 -4.8 phosphate uptake ABC transporter permease compare
SMc02307 -3.4 -9.7 histidinol dehydrogenase compare
SMc01842 -3.4 -3.3 methyltransferase transcription regulator protein compare
SMc02765 -3.4 -7.8 tryptophan synthase subunit alpha compare
SM_b21175 -3.3 -4.7 phosphate uptake ABC transporter permease compare
SMc02165 -3.3 -5.4 orotate phosphoribosyltransferase compare
SMc04346 -3.2 -3.4 ketol-acid reductoisomerase compare
SMc02495 -3.1 -1.6 translaldolase compare
SMc02246 -3.1 -1.2 hypothetical protein compare
SMc04262 -3.0 -10.3 6-phosphogluconate dehydrogenase compare
SM_b21176 -3.0 -5.2 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc03165 -2.8 -4.6 Novel Xylose regulator from LacI family (from data) compare
SMc03981 -2.8 -5.6 phosphoglycerate kinase compare
SMc03162 -2.7 -9.2 3-ketoglucose dehydratase (from data) conserved
SMc00294 -2.7 -10.8 aminotransferase compare
SMc00412 -2.6 -3.5 orotidine 5'-phosphate decarboxylase compare
SMc03795 -2.6 -2.4 isopropylmalate isomerase small subunit compare
SMc03978 -2.5 -1.7 transketolase compare
SMc02707 -2.5 -3.8 hypothetical protein compare
SMc00619 -2.5 -2.4 hypothetical protein compare
SMc03229 -2.4 -1.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc03997 -2.3 -9.7 hypothetical protein conserved
SMc00450 -2.3 -2.3 protoheme IX farnesyltransferase compare
SMc02172 -2.3 -8.8 transcriptional regulator compare
SMc00143 -2.3 -2.4 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
SMc03826 -2.2 -2.1 argininosuccinate synthase compare
SMc00982 -2.1 -6.5 dioxygenase compare
SMc03974 -2.1 -4.4 hypothetical protein compare
SMc02308 -2.0 -5.1 hypothetical protein compare
SM_b20746 -2.0 -1.5 hypothetical protein compare
SMc01881 -2.0 -3.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc02983 -2.0 -7.0 ornithine, DAP, or arginine decarboxylase compare
SMc02112 -1.9 -4.6 hypothetical protein compare
SMc02362 -1.9 -2.4 cytochrome c-type biogenesis protein CcmE compare
SMc01028 -1.7 -10.5 phosphopyruvate hydratase compare
SM_b21633 -1.7 -1.7 enoyl-CoA hydratase compare
SMc01124 -1.7 -5.4 PII uridylyl-transferase compare
SMc00414 -1.7 -11.1 hypothetical protein compare
SMc01430 -1.7 -4.9 acetolactate synthase 3 regulatory subunit compare
SMc01569 -1.6 -0.8 carbamoyl phosphate synthase small subunit compare
SMc02574 -1.6 -3.2 imidazoleglycerol-phosphate dehydratase compare
SMc02049 -1.6 -12.5 glycine dehydrogenase compare
SMa1639 -1.6 -1.5 hypothetical protein compare
SMc01215 -1.6 -1.1 carbamoyl phosphate synthase large subunit compare
SMc02640 -1.6 -4.6 UDP-glucuronic acid epimerase compare
SMc00963 -1.6 -2.4 hypothetical protein compare
SMc00295 -1.6 -1.1 hypothetical protein compare
SMc03763 -1.6 -1.8 cytosine-specific methyltransferase compare
SMc02558 -1.5 -4.3 hypothetical protein compare
SMc00334 -1.5 -1.5 cytidylate kinase compare
SMc01206 -1.5 -1.8 queuine tRNA-ribosyltransferase compare
SMc00981 -1.5 -4.8 ferredoxin protein compare
SMc02145 -1.5 -1.1 signal peptide protein compare
SMc01578 -1.5 -7.6 aspartate aminotransferase compare
SMc03127 -1.4 -2.0 ABC transporter permease compare
SMc00053 -1.4 -1.0 monovalent cation/H+ antiporter subunit C compare
SMa2020 -1.4 -3.9 Transcriptional regulator compare
SMc01800 -1.4 -1.2 cytochrome C oxidase assembly transmembrane protein compare
SMc04453 -1.4 -1.6 hypothetical protein compare
SMc04000 -1.4 -1.0 hypothetical protein compare
SMc02886 -1.4 -2.2 signal peptide protein compare
SMa1095 -1.4 -0.9 hypothetical protein compare
SMc03153 -1.4 -3.4 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
SMc04005 -1.3 -6.4 pyruvate kinase compare
SMc02838 -1.3 -4.3 phosphoglyceromutase compare
SMc02225 -1.3 -2.5 hypothetical protein compare
SMc01579 -1.3 -1.4 hypothetical protein compare
SMc02434 -1.3 -3.6 hypothetical protein compare
SMc02141 -1.3 -2.6 phosphate transporter PhoU compare
SMc00806 -1.2 -3.2 hypothetical protein compare
SMa0754 -1.2 -2.0 hypothetical protein compare
SMc03774 -1.2 -2.3 hypothetical protein compare
SMc03849 -1.2 -0.7 heme exporter C (cytochrome C-type biogenesis protein) transmembrane compare
SMc02697 -1.1 -2.0 hypothetical protein compare
SMc01119 -1.1 -2.3 hypothetical protein compare
SMc01568 -1.1 -1.6 hypothetical protein compare
SMc02685 -1.1 -2.3 hypothetical protein compare
SMc02866 -1.1 -2.8 transcriptional regulator compare
SMa0905 -1.1 -1.2 hypothetical protein compare
SMc04085 -1.1 -2.6 hypothetical protein compare
SMc00622 -1.0 -5.3 ribonuclease D protein compare
SMc03242 -1.0 -1.3 GTP-binding protein compare
SMa0753 -1.0 -0.8 hypothetical protein compare
SMc01501 -1.0 -0.9 mannitol 2-dehydrogenase compare
SM_b20258 -1.0 -2.0 transcriptional regulator compare
SMc02521 -1.0 -3.2 glycerol-3-phosphate regulon repressor transcription regulator protein compare
SMc01495 -1.0 -2.6 transcriptional regulator compare
SMc02724 -1.0 -3.0 hypothetical protein compare
SMc02048 -1.0 -5.6 glycine cleavage system protein H compare
SM_b20089 -1.0 -2.0 hypothetical protein compare
SMc00013 -1.0 -1.4 cytochrome C oxidase subunit III transmembrane protein compare
SMc03798 -1.0 -5.5 aldose 1-epimerase compare
SMc02115 -1.0 -0.8 hypothetical protein compare
SM_b21130 -1.0 -5.0 sulfate ABC transporter ATP-binding protein compare
SMc00838 -1.0 -4.6 hypothetical protein compare
SMc00025 -0.9 -4.3 pyruvate phosphate dikinase compare
SMc01441 -0.9 -4.1 membrane bound protease compare
SMc01147 -0.9 -2.3 coproporphyrinogen III oxidase compare
SM_b20773 -0.9 -2.2 GntR family transcriptional regulator compare
SMc00187 -0.9 -2.2 ubiquinol-cytochrome C reductase iron-sulfur subunit protein compare
SMc01260 -0.9 -2.7 transcriptional regulator compare
SM_b21131 -0.9 -5.3 sulfate ABC transporter permease compare
SMa0789 -0.9 -1.6 GntR family transcriptional regulator compare
SMc03836 -0.9 -1.3 acyl-CoA thioesterase i protein compare
SMc00496 -0.9 -1.2 hypothetical protein compare
SMc02384 -0.9 -4.7 glycosyltransferase transmembrane protein compare
SMc03008 -0.9 -1.0 chemotaxis protein compare
SMa0286 -0.9 -1.5 hypothetical protein compare
SMc01039 -0.9 -1.3 hypothetical protein compare
SMa0412 -0.9 -2.8 hypothetical protein compare
SMc04246 -0.9 -1.3 transmembrane signal peptide protein compare
SMc02659 -0.9 -2.9 GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein compare
SMc02858 -0.9 -0.5 chaperone protein DnaJ compare
SMc00709 -0.9 -2.2 hypothetical protein compare
SMc00019 -0.8 -2.3 hypothetical protein compare
SMc01440 -0.8 -3.5 hydrolase serine protease transmembrane protein compare
SMa1053 -0.8 -1.4 hypothetical protein compare
SMc00009 -0.8 -3.6 cytochrome C oxidase subunit II protein compare
SMa1201 -0.8 -1.5 hypothetical protein compare
SMc02850 -0.8 -1.5 DNA polymerase I compare
SMc01364 -0.8 -0.8 DNA topoisomerase I compare
SMa0349 -0.8 -1.6 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source methyl-beta-D-xylopyranoside in Sinorhizobium meliloti 1021

For carbon source methyl-beta-D-xylopyranoside across organisms