Experiment set17IT021 for Pseudomonas stutzeri RCH2

Compare to:

LB with syringaldehyde 4 mM

200 most important genes:

  gene name fitness t score description  
Psest_1999 -3.6 -1.5 pseudouridine synthase compare
Psest_0725 -3.2 -2.1 Negative regulator of beta-lactamase expression compare
Psest_0028 -3.2 -5.2 Coproporphyrinogen III oxidase compare
Psest_1824 -3.1 -3.5 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_2585 -3.1 -1.1 pseudouridylate synthase I compare
Psest_0309 -3.0 -1.6 RND family efflux transporter, MFP subunit compare
Psest_1496 -2.9 -1.5 Holliday junction DNA helicase, RuvA subunit compare
Psest_0310 -2.9 -3.4 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2651 -2.8 -5.9 DNA topoisomerase I, bacterial compare
Psest_3546 -2.6 -1.1 Phosphatidylglycerophosphatase A and related proteins compare
Psest_3960 -2.6 -1.6 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0498 -2.5 -2.0 ribosome small subunit-dependent GTPase A compare
Psest_0466 -2.5 -4.9 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0398 -2.4 -8.1 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_0013 -2.4 -5.1 Lauroyl/myristoyl acyltransferase compare
Psest_0959 -2.4 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_0852 -2.4 -5.8 glucose-6-phosphate 1-dehydrogenase compare
Psest_1012 -2.3 -4.7 Signal transduction histidine kinase compare
Psest_1295 -2.3 -6.7 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3228 -2.2 -11.1 Zn-dependent protease with chaperone function compare
Psest_3307 -2.1 -8.2 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1013 -2.1 -3.2 phosphoribosylamine--glycine ligase compare
Psest_2532 -2.1 -3.8 Uncharacterized protein conserved in bacteria compare
Psest_2945 -2.1 -1.6 septum site-determining protein MinC compare
Psest_2712 -2.1 -4.8 Surface lipoprotein compare
Psest_1505 -2.1 -2.0 Organic radical activating enzymes compare
Psest_1660 -2.0 -2.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_2946 -2.0 -2.9 septum site-determining protein MinD compare
Psest_0744 -1.9 -1.0 Uncharacterized conserved protein compare
Psest_3304 -1.9 -6.4 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_3862 -1.8 -10.2 phosphoenolpyruvate-protein phosphotransferase compare
Psest_1659 -1.8 -2.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3112 -1.8 -3.9 electron transport complex, RnfABCDGE type, A subunit compare
Psest_0311 -1.8 -5.5 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_1510 -1.7 -2.8 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0417 -1.7 -2.0 Acyl-CoA dehydrogenases compare
Psest_1306 -1.6 -1.6 hypothetical protein compare
Psest_2530 -1.6 -4.4 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_3322 -1.6 -10.8 TIGR02099 family protein compare
Psest_1661 -1.6 -1.8 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_2579 -1.6 -5.0 amidophosphoribosyltransferase compare
Psest_2304 -1.6 -1.0 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_3476 -1.6 -1.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1463 -1.5 -1.0 SufE protein probably involved in Fe-S center assembly compare
Psest_0521 -1.5 -7.3 lytic murein transglycosylase compare
Psest_1920 -1.5 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_1657 -1.5 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0191 -1.5 -0.9 PAS domain S-box compare
Psest_3790 -1.5 -7.4 Cytochrome c5 compare
Psest_0503 -1.4 -1.8 Acyl dehydratase compare
Psest_4142 -1.4 -1.4 hypothetical protein compare
Psest_4078 -1.4 -1.8 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3306 -1.4 -3.4 conserved hypothetical integral membrane protein compare
Psest_0165 -1.4 -3.6 protein-export chaperone SecB compare
Psest_1704 -1.4 -0.9 Dehydrogenases (flavoproteins) compare
Psest_0998 -1.4 -2.2 poly(A) polymerase compare
Psest_0442 -1.4 -2.4 ATPases of the AAA+ class compare
Psest_0212 -1.4 -1.6 exodeoxyribonuclease V, gamma subunit compare
Psest_0919 -1.4 -2.0 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_1656 -1.4 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3735 -1.3 -1.6 uncharacterized domain 1 compare
Psest_3100 -1.3 -1.3 RNA polymerase sigma factor RpoE compare
Psest_3383 -1.3 -3.8 Uncharacterized protein conserved in bacteria compare
Psest_0186 -1.3 -4.0 Protein-disulfide isomerase compare
Psest_2714 -1.3 -2.0 7-cyano-7-deazaguanine reductase compare
Psest_3305 -1.3 -6.1 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_1215 -1.3 -2.2 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_2288 -1.3 -2.2 trigger factor compare
Psest_1805 -1.3 -1.5 integration host factor, beta subunit compare
Psest_3565 -1.3 -0.7 hypothetical protein compare
Psest_3832 -1.3 -1.5 hypothetical protein compare
Psest_2000 -1.2 -3.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0115 -1.2 -1.1 Predicted integral membrane protein compare
Psest_0133 -1.2 -1.2 type VI secretion protein, VC_A0107 family compare
Psest_0795 -1.2 -2.5 ABC-type multidrug transport system, ATPase component compare
Psest_3456 -1.2 -1.5 RNA polymerase sigma factor, sigma-70 family compare
Psest_1179 -1.2 -1.3 2-hydroxy-3-oxopropionate reductase compare
Psest_3129 -1.2 -0.9 tyrosine recombinase XerD compare
Psest_3883 -1.2 -4.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0869 -1.2 -2.2 Acetyltransferase (isoleucine patch superfamily) compare
Psest_0193 -1.2 -1.1 conserved hypothetical protein compare
Psest_3395 -1.2 -0.9 hypothetical protein compare
Psest_1574 -1.2 -1.9 phenazine biosynthesis protein PhzF family compare
Psest_1602 -1.2 -2.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1826 -1.1 -2.3 hypothetical protein compare
Psest_3159 -1.1 -4.4 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3303 -1.1 -2.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0999 -1.1 -1.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0922 -1.1 -1.8 alkylhydroperoxidase AhpD family core domain compare
Psest_2772 -1.1 -2.9 MIP family channel proteins compare
Psest_4044 -1.1 -2.7 type I site-specific deoxyribonuclease, HsdR family compare
Psest_3064 -1.1 -1.6 hypothetical protein compare
Psest_3115 -1.1 -4.1 electron transport complex, RnfABCDGE type, D subunit compare
Psest_1870 -1.1 -0.6 Transcriptional regulators compare
Psest_1677 -1.1 -1.6 Protein-tyrosine-phosphatase compare
Psest_2527 -1.1 -4.5 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_1185 -1.1 -2.4 heavy metal response regulator compare
Psest_1022 -1.0 -4.6 Thiol:disulfide interchange protein compare
Psest_0846 -1.0 -2.9 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_2531 -1.0 -6.0 cytochrome c oxidase accessory protein FixG compare
Psest_3890 -1.0 -1.1 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_1354 -1.0 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_0778 -1.0 -2.2 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin compare
Psest_1804 -1.0 -1.6 Superfamily II DNA and RNA helicases compare
Psest_3123 -1.0 -1.5 dihydroorotase, homodimeric type compare
Psest_0511 -1.0 -1.0 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_4088 -1.0 -2.6 Transcriptional regulators compare
Psest_3865 -1.0 -3.0 Predicted integral membrane protein (DUF2269). compare
Psest_1877 -1.0 -2.3 AraC-type DNA-binding domain-containing proteins compare
Psest_0164 -1.0 -0.6 Glutaredoxin, GrxC family compare
Psest_3317 -1.0 -2.2 Phosphotransferase System HPr (HPr) Family compare
Psest_2123 -1.0 -0.8 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_0066 -1.0 -1.4 Protein of unknown function (DUF3060). compare
Psest_3881 -1.0 -0.9 hypothetical protein compare
Psest_3331 -1.0 -1.9 rare lipoprotein A compare
Psest_2090 -1.0 -1.8 Protein of unknown function (DUF2970). compare
Psest_3743 -1.0 -2.6 Regulator of sigma D compare
Psest_0505 -1.0 -2.4 Putative effector of murein hydrolase compare
Psest_0083 -1.0 -1.6 Uncharacterized conserved protein compare
Psest_0359 -1.0 -2.3 Transcriptional regulators compare
Psest_2067 -0.9 -0.9 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0805 -0.9 -1.8 hypothetical protein compare
Psest_1582 -0.9 -2.3 Protein of unknown function (DUF3087). compare
Psest_3184 -0.9 -3.6 hypothetical protein compare
Psest_3113 -0.9 -1.0 electron transport complex, RnfABCDGE type, B subunit compare
Psest_0489 -0.9 -0.6 phosphoserine phosphatase SerB compare
Psest_2647 -0.9 -1.7 SOS-response cell division inhibitor, blocks FtsZ ring formation compare
Psest_3155 -0.9 -2.3 hypothetical protein compare
Psest_3114 -0.9 -4.1 electron transport complex, RnfABCDGE type, C subunit compare
Psest_0426 -0.9 -2.2 Transposase and inactivated derivatives compare
Psest_0520 -0.9 -0.5 hypothetical protein compare
Psest_0575 -0.9 -0.6 HrpA-like helicases compare
Psest_0867 -0.9 -1.1 hypothetical protein compare
Psest_2852 -0.9 -1.8 Outer membrane lipoprotein compare
Psest_4363 -0.9 -3.8 ATPases involved in chromosome partitioning compare
Psest_2752 -0.9 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_4211 -0.9 -2.3 conserverd hypothetical protein compare
Psest_4273 -0.9 -3.6 Lysophospholipase compare
Psest_1132 -0.9 -2.3 mutator mutT protein compare
Psest_2744 -0.9 -0.8 Uncharacterized conserved protein compare
Psest_3422 -0.9 -1.9 hypothetical protein compare
Psest_2525 -0.9 -2.1 cytochrome c oxidase, cbb3-type, subunit II compare
Psest_1479 -0.9 -1.6 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_0457 -0.9 -1.6 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1619 -0.9 -2.3 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 compare
Psest_2794 -0.9 -2.3 Predicted permease, DMT superfamily compare
Psest_2872 -0.9 -1.2 protein RecA compare
Psest_0292 -0.9 -1.4 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_3766 -0.8 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_3419 -0.8 -3.1 Predicted transcriptional regulators compare
Psest_3319 -0.8 -3.5 Uncharacterized protein conserved in bacteria compare
Psest_2786 -0.8 -0.7 Domain of unknown function (DUF3597). compare
Psest_4221 -0.8 -2.5 homoserine kinase, Neisseria type compare
Psest_1167 -0.8 -0.6 hypothetical protein compare
Psest_0216 -0.8 -3.0 Predicted permeases compare
Psest_0449 -0.8 -4.7 Glutamine synthetase adenylyltransferase compare
Psest_1814 -0.8 -5.8 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2334 -0.8 -6.0 Uncharacterized protein conserved in bacteria compare
Psest_1079 -0.8 -2.7 Isopropylmalate/homocitrate/citramalate synthases compare
Psest_3531 -0.8 -0.8 Peptidase propeptide and YPEB domain. compare
Psest_0587 -0.8 -2.1 Domain of Unknown Function (DUF326). compare
Psest_2130 -0.8 -1.6 exodeoxyribonuclease III compare
Psest_1506 -0.8 -3.0 queuosine biosynthesis protein QueC compare
Psest_1623 -0.8 -1.7 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_2901 -0.8 -1.1 hypothetical protein compare
Psest_4191 -0.8 -1.6 Transcriptional regulator compare
Psest_2001 -0.8 -0.9 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_0595 -0.8 -2.2 Uncharacterized conserved protein compare
Psest_3323 -0.8 -1.8 ribonuclease, Rne/Rng family compare
Psest_2538 -0.8 -0.9 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_1337 -0.8 -2.5 Methyl-accepting chemotaxis protein compare
Psest_1907 -0.8 -0.8 hypothetical protein compare
Psest_1090 -0.8 -2.8 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_4145 -0.8 -2.4 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Psest_3242 -0.8 -2.8 hypothetical protein compare
Psest_1197 -0.8 -1.9 Ureidoglycolate hydrolase compare
Psest_4316 -0.7 -1.7 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_3910 -0.7 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_4147 -0.7 -3.0 Flagellar basal body L-ring protein compare
Psest_2563 -0.7 -3.5 Arabinose efflux permease compare
Psest_2736 -0.7 -2.1 Transposase and inactivated derivatives compare
Psest_1259 -0.7 -2.5 23S rRNA m2A2503 methyltransferase compare
Psest_3692 -0.7 -1.3 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_1397 -0.7 -1.7 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_1700 -0.7 -1.6 Transcriptional regulator compare
Psest_0514 -0.7 -2.4 lytic murein transglycosylase B compare
Psest_2253 -0.7 -1.5 small redox-active disulfide protein 2 compare
Psest_0958 -0.7 -3.0 Oligoketide cyclase/lipid transport protein compare
Psest_2022 -0.7 -1.3 ADP-ribose pyrophosphatase compare
Psest_2991 -0.7 -2.5 hypothetical protein compare
Psest_2981 -0.7 -1.1 sodium pump decarboxylases, gamma subunit compare
Psest_3838 -0.7 -1.8 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_4178 -0.7 -1.3 hypothetical protein compare
Psest_2342 -0.7 -2.8 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein compare
Psest_0057 -0.7 -2.1 Predicted transcriptional regulators compare
Psest_4252 -0.7 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_0546 -0.7 -2.2 hypothetical protein compare
Psest_0831 -0.7 -0.5 hypothetical protein compare
Psest_3810 -0.7 -0.6 orotate phosphoribosyltransferase compare
Psest_1398 -0.7 -2.2 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in stress experiments

For stress syringaldehyde across organisms