Experiment set17IT003 for Pseudomonas stutzeri RCH2

Compare to:

LB with Nickel (II) chloride hexahydrate 0.9 mM

200 most important genes:

  gene name fitness t score description  
Psest_0845 -4.7 -1.2 hypothetical protein compare
Psest_0309 -4.3 -1.9 RND family efflux transporter, MFP subunit compare
Psest_0498 -3.6 -2.3 ribosome small subunit-dependent GTPase A compare
Psest_0872 -3.0 -1.6 Helix-turn-helix. compare
Psest_1679 -3.0 -2.5 ribonuclease, Rne/Rng family compare
Psest_0846 -2.9 -5.0 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_3546 -2.8 -1.4 Phosphatidylglycerophosphatase A and related proteins compare
Psest_0725 -2.8 -2.5 Negative regulator of beta-lactamase expression compare
Psest_3351 -2.7 -5.4 peptide chain release factor 3 compare
Psest_0260 -2.7 -2.1 Cell division protein compare
Psest_0708 -2.6 -2.1 outer membrane assembly lipoprotein YfiO compare
Psest_1643 -2.6 -1.4 hypothetical protein compare
Psest_3816 -2.6 -1.3 DNA-directed RNA polymerase, omega subunit compare
Psest_0844 -2.5 -5.5 High-affinity Fe2+/Pb2+ permease compare
Psest_0397 -2.2 -9.4 Small-conductance mechanosensitive channel compare
Psest_0697 -2.1 -3.2 ribosomal protein L9 compare
Psest_0417 -1.9 -1.8 Acyl-CoA dehydrogenases compare
Psest_3960 -1.9 -1.6 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0193 -1.9 -1.5 conserved hypothetical protein compare
Psest_2123 -1.9 -2.1 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_2976 -1.8 -1.3 hypothetical protein compare
Psest_2304 -1.8 -1.1 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_4170 -1.7 -1.9 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_2810 -1.7 -5.4 5'/3'-nucleotidase SurE compare
Psest_1660 -1.7 -1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3562 -1.7 -2.4 ABC-type antimicrobial peptide transport system, ATPase component compare
Psest_0843 -1.7 -8.5 hypothetical protein compare
Psest_2775 -1.6 -3.2 Glycerol-3-phosphate dehydrogenase compare
Psest_0855 -1.6 -4.2 NAD-dependent aldehyde dehydrogenases compare
Psest_1306 -1.6 -1.9 hypothetical protein compare
Psest_0740 -1.6 -2.2 Transcriptional regulator compare
Psest_3367 -1.6 -1.4 translation initation factor SUI1, putative, prokaryotic compare
Psest_1510 -1.6 -2.8 Putative Zn-dependent protease, contains TPR repeats compare
Psest_2645 -1.6 -5.5 Transcriptional regulator compare
Psest_1874 -1.5 -2.4 AraC-type DNA-binding domain-containing proteins compare
Psest_0355 -1.5 -1.7 Glycine cleavage system regulatory protein compare
Psest_0066 -1.5 -2.0 Protein of unknown function (DUF3060). compare
Psest_0259 -1.5 -1.2 cell division ATP-binding protein FtsE compare
Psest_0334 -1.5 -2.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0558 -1.5 -0.8 urease, beta subunit compare
Psest_4393 -1.5 -4.2 Capsule polysaccharide export protein compare
Psest_2011 -1.5 -7.0 Predicted permease compare
Psest_4044 -1.5 -1.4 type I site-specific deoxyribonuclease, HsdR family compare
Psest_2718 -1.5 -1.2 hypothetical protein compare
Psest_3306 -1.5 -4.3 conserved hypothetical integral membrane protein compare
Psest_1163 -1.5 -3.4 diguanylate cyclase (GGDEF) domain compare
Psest_3100 -1.5 -1.0 RNA polymerase sigma factor RpoE compare
Psest_0133 -1.4 -1.5 type VI secretion protein, VC_A0107 family compare
Psest_3458 -1.4 -3.9 hypothetical protein compare
Psest_0466 -1.4 -3.4 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3287 -1.4 -4.4 Type II secretory pathway, component PulF compare
Psest_0678 -1.4 -3.8 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_3377 -1.4 -1.0 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_2018 -1.4 -3.0 Uncharacterized conserved protein compare
Psest_2772 -1.4 -3.2 MIP family channel proteins compare
Psest_3247 -1.4 -1.4 Uncharacterized membrane protein compare
Psest_3168 -1.4 -1.8 Molybdopterin converting factor, large subunit compare
Psest_2862 -1.4 -5.3 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_1655 -1.3 -3.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0182 -1.3 -4.1 glycine cleavage system H protein compare
Psest_0837 -1.3 -2.1 Putative lipid carrier protein compare
Psest_1661 -1.3 -1.8 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_1824 -1.3 -1.7 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_0857 -1.3 -1.3 Membrane transporters of cations and cationic drugs compare
Psest_0719 -1.3 -4.0 Uncharacterized protein conserved in bacteria compare
Psest_2446 -1.3 -1.4 acetyl-CoA acetyltransferases compare
Psest_3768 -1.3 -2.5 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
Psest_3745 -1.2 -3.0 Uncharacterized enzyme of heme biosynthesis compare
Psest_1480 -1.2 -2.3 arsenate reductase (glutaredoxin) compare
Psest_2646 -1.2 -1.5 SOS regulatory protein LexA compare
Psest_0164 -1.2 -0.7 Glutaredoxin, GrxC family compare
Psest_4201 -1.2 -1.8 general secretion pathway protein F compare
Psest_0675 -1.2 -3.7 Predicted periplasmic lipoprotein compare
Psest_2703 -1.2 -3.1 ATPases involved in chromosome partitioning compare
Psest_1204 -1.2 -1.8 Transcriptional regulators compare
Psest_0218 -1.2 -2.7 Acyl-CoA hydrolase compare
Psest_1516 -1.2 -1.7 Uncharacterized lipoprotein compare
Psest_3123 -1.2 -1.6 dihydroorotase, homodimeric type compare
Psest_0442 -1.2 -2.4 ATPases of the AAA+ class compare
Psest_1013 -1.2 -2.7 phosphoribosylamine--glycine ligase compare
Psest_3391 -1.1 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_3129 -1.1 -0.9 tyrosine recombinase XerD compare
Psest_2946 -1.1 -2.4 septum site-determining protein MinD compare
Psest_2322 -1.1 -3.1 Transcriptional regulators compare
Psest_3507 -1.1 -2.1 FOG: EAL domain compare
Psest_0006 -1.1 -2.5 alkyl hydroperoxide reductase, F subunit compare
Psest_1424 -1.1 -2.4 Lipoate-protein ligase A compare
Psest_3435 -1.1 -3.3 hypothetical protein compare
Psest_2988 -1.1 -4.3 aspartate kinase, monofunctional class compare
Psest_2651 -1.1 -2.6 DNA topoisomerase I, bacterial compare
Psest_3226 -1.1 -0.8 Predicted membrane protein compare
Psest_1659 -1.1 -2.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1990 -1.1 -2.1 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
Psest_3384 -1.1 -4.3 glutamate 5-kinase compare
Psest_0175 -1.1 -4.5 Xaa-Pro aminopeptidase compare
Psest_3304 -1.0 -3.6 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_2899 -1.0 -1.1 hypothetical protein compare
Psest_1012 -1.0 -3.1 Signal transduction histidine kinase compare
Psest_0028 -1.0 -3.7 Coproporphyrinogen III oxidase compare
Psest_2090 -1.0 -1.8 Protein of unknown function (DUF2970). compare
Psest_1363 -1.0 -3.4 Predicted membrane protein compare
Psest_2044 -1.0 -3.4 ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system compare
Psest_3039 -1.0 -1.0 periplasmic nitrate reductase, NapE protein compare
Psest_1184 -1.0 -2.4 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_2975 -1.0 -1.7 tRNA_Arg_CCT compare
Psest_1922 -1.0 -4.7 aminopeptidase N, Escherichia coli type compare
Psest_1843 -1.0 -1.1 Uncharacterized Fe-S protein compare
Psest_0902 -1.0 -3.0 Predicted transcriptional regulators compare
Psest_1008 -1.0 -0.8 hypothetical protein compare
Psest_3809 -1.0 -2.3 hypothetical protein compare
Psest_0170 -1.0 -3.5 5,10-methenyltetrahydrofolate synthetase compare
Psest_2253 -1.0 -2.2 small redox-active disulfide protein 2 compare
Psest_0041 -0.9 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_0485 -0.9 -1.6 clan AA aspartic protease, TIGR02281 family compare
Psest_1505 -0.9 -1.2 Organic radical activating enzymes compare
Psest_3645 -0.9 -4.4 Predicted redox protein, regulator of disulfide bond formation compare
Psest_2321 -0.9 -3.5 methylisocitrate lyase compare
Psest_2532 -0.9 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_0869 -0.9 -1.7 Acetyltransferase (isoleucine patch superfamily) compare
Psest_0515 -0.9 -2.5 rare lipoprotein A compare
Psest_1647 -0.9 -2.3 Lhr-like helicases compare
Psest_1804 -0.9 -1.4 Superfamily II DNA and RNA helicases compare
Psest_3343 -0.9 -2.0 Predicted periplasmic protein compare
Psest_3447 -0.9 -1.0 Uncharacterized MobA-related protein compare
Psest_1295 -0.9 -2.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1886 -0.9 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_4274 -0.9 -1.2 hypothetical protein compare
Psest_1562 -0.9 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_2434 -0.9 -1.4 Protein of unknown function (DUF2892). compare
Psest_2561 -0.9 -0.6 hypothetical protein compare
Psest_3289 -0.9 -3.2 prepilin-type N-terminal cleavage/methylation domain compare
Psest_2748 -0.9 -1.1 Transcriptional regulator compare
Psest_0822 -0.9 -1.5 Transcriptional regulators compare
Psest_4126 -0.9 -1.4 Predicted peroxiredoxins compare
Psest_3479 -0.9 -3.0 molybdenum cofactor synthesis domain compare
Psest_3878 -0.8 -2.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1457 -0.8 -1.3 FOG: Ankyrin repeat compare
Psest_1357 -0.8 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_0706 -0.8 -4.1 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_3784 -0.8 -1.5 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_2863 -0.8 -2.6 Transcriptional regulator compare
Psest_3735 -0.8 -0.9 uncharacterized domain 1 compare
Psest_3122 -0.8 -2.9 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3840 -0.8 -2.3 D-lactate/glycolate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_1522 -0.8 -1.3 hypothetical protein compare
Psest_0398 -0.8 -2.8 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_1731 -0.8 -1.1 flagellar biosynthetic protein FliO compare
Psest_0393 -0.8 -3.3 Methylase of chemotaxis methyl-accepting proteins compare
Psest_0212 -0.8 -1.1 exodeoxyribonuclease V, gamma subunit compare
Psest_2809 -0.8 -2.2 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_4309 -0.8 -1.5 ABC-type Mn/Zn transport systems, ATPase component compare
Psest_1947 -0.8 -0.5 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_1317 -0.8 -2.6 phosphonate ABC transporter, permease protein PhnE compare
Psest_2424 -0.8 -0.9 K+ transport systems, NAD-binding component compare
Psest_1873 -0.8 -1.6 Predicted permease, DMT superfamily compare
Psest_4345 -0.8 -3.9 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_0385 -0.8 -1.5 Conserved secreted protein compare
Psest_3286 -0.8 -2.4 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Psest_3022 -0.8 -1.9 Predicted membrane protein compare
Psest_1837 -0.8 -3.4 Endoglucanase compare
Psest_2091 -0.8 -1.8 Molecular chaperone (small heat shock protein) compare
Psest_2365 -0.8 -1.5 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_3014 -0.8 -1.3 cob(I)alamin adenosyltransferase compare
Psest_3707 -0.8 -1.6 Transcriptional regulator compare
Psest_1560 -0.8 -2.9 hypothetical protein compare
Psest_3303 -0.8 -2.9 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1087 -0.8 -0.7 uncharacterized peroxidase-related enzyme compare
Psest_0958 -0.8 -2.8 Oligoketide cyclase/lipid transport protein compare
Psest_3662 -0.8 -1.1 DnaJ-domain-containing proteins 1 compare
Psest_0514 -0.8 -2.5 lytic murein transglycosylase B compare
Psest_0537 -0.8 -1.0 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_0919 -0.8 -1.4 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_4370 -0.8 -1.6 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_2872 -0.8 -1.0 protein RecA compare
Psest_1260 -0.8 -3.3 type IV pilus biogenesis/stability protein PilW compare
Psest_3437 -0.8 -2.0 diguanylate cyclase (GGDEF) domain compare
Psest_2401 -0.8 -2.5 Uncharacterized conserved protein compare
Psest_1860 -0.8 -1.4 Uncharacterized conserved protein compare
Psest_4005 -0.7 -2.6 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Psest_3767 -0.7 -2.4 tyrosine recombinase XerC compare
Psest_3185 -0.7 -1.0 MoxR-like ATPases compare
Psest_4191 -0.7 -1.7 Transcriptional regulator compare
Psest_3845 -0.7 -3.6 phosphate regulon transcriptional regulatory protein PhoB compare
Psest_1199 -0.7 -2.4 OHCU decarboxylase compare
Psest_3692 -0.7 -1.6 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_0533 -0.7 -2.2 Sel1 repeat. compare
Psest_1486 -0.7 -1.7 hypothetical protein compare
Psest_3766 -0.7 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_1055 -0.7 -4.2 Saccharopine dehydrogenase and related proteins compare
Psest_3938 -0.7 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_3838 -0.7 -2.2 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_2855 -0.7 -0.7 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0861 -0.7 -2.5 hypothetical protein compare
Psest_2663 -0.7 -3.4 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3462 -0.7 -2.1 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_4158 -0.7 -1.7 Flagellar motor protein compare
Psest_3288 -0.7 -4.1 type IV-A pilus assembly ATPase PilB compare
Psest_1791 -0.7 -1.9 ABC-type transport system, involved in lipoprotein release, permease component compare
Psest_3810 -0.7 -0.7 orotate phosphoribosyltransferase compare
Psest_1302 -0.7 -1.7 Predicted thioesterase compare


Specific Phenotypes

For 3 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Pseudomonas stutzeri RCH2

For stress Nickel (II) chloride hexahydrate across organisms