Experiment set16IT078 for Pseudomonas stutzeri RCH2

Compare to:

Lactate-nitrite with YE; anaerobic; sample1

200 most important genes:

  gene name fitness t score description  
Psest_1473 -4.3 -5.0 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2988 -3.9 -10.9 aspartate kinase, monofunctional class compare
Psest_2234 -3.4 -15.0 oxygen-independent coproporphyrinogen III oxidase compare
Psest_0508 -3.4 -9.1 gamma-glutamyl phosphate reductase compare
Psest_3648 -3.2 -8.9 anthranilate phosphoribosyltransferase compare
Psest_3647 -2.9 -2.8 Indole-3-glycerol phosphate synthase compare
Psest_3650 -2.8 -12.5 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2584 -2.6 -6.4 Phosphoribosylanthranilate isomerase compare
Psest_0828 -2.5 -7.8 Nitric oxide reductase activation protein compare
Psest_3384 -2.4 -8.8 glutamate 5-kinase compare
Psest_0827 -2.3 -15.9 Nitric oxide reductase large subunit compare
Psest_1686 -2.2 -6.5 fatty acid/phospholipid synthesis protein PlsX compare
Psest_1022 -2.1 -9.8 Thiol:disulfide interchange protein compare
Psest_3649 -2.1 -8.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0826 -2.1 -10.5 Cytochrome c compare
Psest_2579 -2.0 -1.4 amidophosphoribosyltransferase compare
Psest_3322 -2.0 -15.1 TIGR02099 family protein compare
Psest_2104 -2.0 -1.3 IscR-regulated protein YhgI compare
Psest_0830 -1.9 -10.7 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_1417 -1.8 -2.8 hypothetical protein compare
Psest_3843 -1.8 -9.1 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0814 -1.8 -3.1 MoxR-like ATPases compare
Psest_1509 -1.8 -7.9 quinolinate synthetase complex, A subunit compare
Psest_1505 -1.8 -1.8 Organic radical activating enzymes compare
Psest_1655 -1.8 -2.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0062 -1.7 -2.5 tryptophan synthase, alpha subunit compare
Psest_1656 -1.7 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_1663 -1.7 -3.8 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0186 -1.7 -5.1 Protein-disulfide isomerase compare
Psest_1295 -1.7 -4.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2325 -1.6 -7.6 alpha-L-glutamate ligase-related protein compare
Psest_1659 -1.6 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3323 -1.6 -4.9 ribonuclease, Rne/Rng family compare
Psest_2067 -1.6 -2.1 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0393 -1.6 -4.7 Methylase of chemotaxis methyl-accepting proteins compare
Psest_2945 -1.5 -1.3 septum site-determining protein MinC compare
Psest_0799 -1.5 -3.1 Uncharacterized protein involved in response to NO compare
Psest_2809 -1.5 -3.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_0953 -1.5 -6.7 iron-sulfur cluster-binding protein compare
Psest_2025 -1.5 -1.1 cold shock domain protein CspD compare
Psest_3399 -1.4 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_0334 -1.4 -3.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4078 -1.4 -1.6 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_1012 -1.4 -3.1 Signal transduction histidine kinase compare
Psest_0954 -1.4 -5.2 Fe-S oxidoreductase compare
Psest_0277 -1.3 -1.6 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_2613 -1.3 -1.9 hypothetical protein compare
Psest_1724 -1.3 -4.3 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3744 -1.3 -5.3 Disulfide bond formation protein DsbB compare
Psest_0152 -1.3 -4.9 Imidazoleglycerol-phosphate dehydratase compare
Psest_1657 -1.3 -1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0952 -1.3 -2.8 Uncharacterized conserved protein compare
Psest_0790 -1.2 -2.9 Uncharacterized protein conserved in bacteria compare
Psest_2976 -1.2 -1.9 hypothetical protein compare
Psest_0297 -1.2 -3.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2324 -1.2 -7.3 hypothetical protein compare
Psest_0718 -1.2 -3.6 nicotinate-nucleotide pyrophosphorylase compare
Psest_0296 -1.2 -5.6 glutathione synthetase, prokaryotic compare
Psest_1249 -1.2 -4.2 serine O-acetyltransferase compare
Psest_1679 -1.2 -1.6 ribonuclease, Rne/Rng family compare
Psest_0958 -1.1 -4.6 Oligoketide cyclase/lipid transport protein compare
Psest_2810 -1.1 -4.0 5'/3'-nucleotidase SurE compare
Psest_0313 -1.1 -3.8 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2490 -1.1 -6.5 succinyl-CoA synthetase, alpha subunit compare
Psest_0796 -1.1 -2.9 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_2935 -1.1 -1.8 hypothetical protein compare
Psest_3921 -1.1 -3.0 Uncharacterized protein conserved in bacteria compare
Psest_4126 -1.1 -3.0 Predicted peroxiredoxins compare
Psest_1518 -1.0 -2.0 tRNA_Ser_CGA compare
Psest_1293 -1.0 -2.0 VanZ like family. compare
Psest_0013 -1.0 -4.3 Lauroyl/myristoyl acyltransferase compare
Psest_2285 -1.0 -2.6 ATP-dependent protease La compare
Psest_3174 -1.0 -7.0 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_0155 -1.0 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_1280 -1.0 -7.5 TonB-dependent copper receptor compare
Psest_3129 -1.0 -0.9 tyrosine recombinase XerD compare
Psest_3092 -1.0 -1.3 ribonuclease III, bacterial compare
Psest_3998 -1.0 -3.7 glutamate--cysteine ligase compare
Psest_2333 -1.0 -0.9 Protein of unknown function (DUF3359). compare
Psest_0844 -1.0 -2.3 High-affinity Fe2+/Pb2+ permease compare
Psest_1879 -1.0 -2.1 Trk-type K+ transport systems, membrane components compare
Psest_4345 -1.0 -4.8 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_1813 -1.0 -5.6 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_0919 -1.0 -2.0 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_1814 -1.0 -6.6 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1479 -1.0 -2.7 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_1167 -1.0 -1.0 hypothetical protein compare
Psest_0164 -1.0 -0.8 Glutaredoxin, GrxC family compare
Psest_1870 -0.9 -1.5 Transcriptional regulators compare
Psest_2023 -0.9 -2.3 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_0144 -0.9 -4.5 Fe-S cluster protector protein compare
Psest_0821 -0.9 -6.2 Cytochrome D1 heme domain. compare
Psest_2798 -0.9 -2.1 Truncated hemoglobins compare
Psest_2123 -0.9 -2.0 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_0537 -0.9 -1.6 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_3044 -0.9 -3.2 deoxycytidine triphosphate deaminase compare
Psest_3449 -0.9 -1.8 DJ-1 family protein compare
Psest_3301 -0.9 -2.0 Predicted transcriptional regulator, BolA superfamily compare
Psest_0855 -0.9 -4.3 NAD-dependent aldehyde dehydrogenases compare
Psest_4003 -0.9 -3.5 TIGR00153 family protein compare
Psest_2771 -0.9 -1.9 Predicted membrane protein compare
Psest_0794 -0.9 -6.8 parallel beta-helix repeat (two copies) compare
Psest_0810 -0.9 -4.1 uroporphyrin-III C-methyltransferase compare
Psest_1161 -0.8 -2.2 E3 Ubiquitin ligase. compare
Psest_1540 -0.8 -1.3 biotin-dependent carboxylase uncharacterized domain compare
Psest_0015 -0.8 -2.4 Tetratricopeptide repeat. compare
Psest_2491 -0.8 -3.3 succinyl-CoA synthetase, beta subunit compare
Psest_0845 -0.8 -0.6 hypothetical protein compare
Psest_1661 -0.8 -0.5 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_0078 -0.8 -1.0 hypothetical protein compare
Psest_0442 -0.8 -1.7 ATPases of the AAA+ class compare
Psest_1837 -0.8 -3.1 Endoglucanase compare
Psest_4346 -0.8 -3.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3045 -0.8 -1.8 Cold shock proteins compare
Psest_3298 -0.8 -4.7 histidinol dehydrogenase compare
Psest_2667 -0.8 -2.8 Uncharacterized protein involved in propionate catabolism compare
Psest_4363 -0.8 -4.0 ATPases involved in chromosome partitioning compare
Psest_1496 -0.8 -0.7 Holliday junction DNA helicase, RuvA subunit compare
Psest_3299 -0.8 -5.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_1354 -0.8 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_0820 -0.8 -3.3 hypothetical protein compare
Psest_1997 -0.8 -1.7 6-phosphogluconolactonase compare
Psest_0584 -0.8 -3.4 hypothetical protein compare
Psest_1920 -0.8 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_3862 -0.8 -5.8 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0529 -0.8 -4.5 Putative Mg2+ and Co2+ transporter CorC compare
Psest_0218 -0.8 -2.3 Acyl-CoA hydrolase compare
Psest_0687 -0.8 -3.7 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_4314 -0.8 -2.7 ABC-type metal ion transport system, ATPase component compare
Psest_0955 -0.8 -3.4 D,L-lactate:H+ symporter (from data) compare
Psest_2590 -0.8 -0.9 3-isopropylmalate dehydratase, small subunit compare
Psest_1292 -0.8 -4.1 monothiol glutaredoxin, Grx4 family compare
Psest_3185 -0.8 -1.6 MoxR-like ATPases compare
Psest_2308 -0.7 -0.9 Predicted Fe-S protein compare
Psest_0601 -0.7 -2.0 hypothetical protein compare
Psest_2329 -0.7 -5.2 Transcriptional regulator compare
Psest_0609 -0.7 -1.5 hypothetical protein compare
Psest_3860 -0.7 -1.3 Predicted permeases compare
Psest_0811 -0.7 -4.3 heme d1 biosynthesis radical SAM protein NirJ compare
Psest_2268 -0.7 -2.2 Alcohol dehydrogenase, class IV compare
Psest_4224 -0.7 -5.1 hypothetical protein compare
Psest_0060 -0.7 -2.1 Predicted Fe-S protein compare
Psest_1506 -0.7 -2.6 queuosine biosynthesis protein QueC compare
Psest_3546 -0.7 -0.7 Phosphatidylglycerophosphatase A and related proteins compare
Psest_1163 -0.7 -2.1 diguanylate cyclase (GGDEF) domain compare
Psest_0792 -0.7 -5.7 Regulator of nitric oxide reductase transcription compare
Psest_0793 -0.7 -5.7 Nitrous oxide reductase compare
Psest_3962 -0.7 -1.2 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_3816 -0.7 -0.8 DNA-directed RNA polymerase, omega subunit compare
Psest_2026 -0.7 -3.8 Uncharacterized conserved protein compare
Psest_3943 -0.7 -2.3 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3720 -0.7 -4.7 penicillin-binding protein, 1A family compare
Psest_2424 -0.7 -1.3 K+ transport systems, NAD-binding component compare
Psest_3766 -0.7 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_0193 -0.7 -1.3 conserved hypothetical protein compare
Psest_0815 -0.7 -5.1 Cytochrome c, mono- and diheme variants compare
Psest_3944 -0.7 -2.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_1031 -0.7 -3.7 Uncharacterized protein conserved in bacteria compare
Psest_1111 -0.7 -1.9 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_1940 -0.7 -2.5 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_1809 -0.7 -3.9 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_2266 -0.7 -2.4 hypothetical protein compare
Psest_0489 -0.7 -0.4 phosphoserine phosphatase SerB compare
Psest_0086 -0.7 -1.7 hypothetical protein compare
Psest_2538 -0.7 -1.4 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_0684 -0.7 -2.9 GTP-binding protein HflX compare
Psest_3317 -0.7 -2.4 Phosphotransferase System HPr (HPr) Family compare
Psest_1231 -0.7 -3.8 Na+/H+ antiporter NhaD and related arsenite permeases compare
Psest_4316 -0.6 -2.0 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_2323 -0.6 -4.4 Uncharacterized protein conserved in archaea compare
Psest_0833 -0.6 -1.8 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains compare
Psest_3664 -0.6 -0.6 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_2911 -0.6 -1.3 Protein of unknown function (DUF2945). compare
Psest_2278 -0.6 -1.8 coenzyme PQQ biosynthesis protein PqqD compare
Psest_0170 -0.6 -2.3 5,10-methenyltetrahydrofolate synthetase compare
Psest_0817 -0.6 -3.5 Ethylbenzene dehydrogenase. compare
Psest_2304 -0.6 -0.9 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0795 -0.6 -2.0 ABC-type multidrug transport system, ATPase component compare
Psest_2626 -0.6 -2.1 Flp pilus assembly protein CpaB compare
Psest_0400 -0.6 -2.9 Geranylgeranyl pyrophosphate synthase compare
Psest_2682 -0.6 -3.0 fumarate hydratase, class II compare
Psest_2578 -0.6 -4.4 O-succinylhomoserine sulfhydrylase compare
Psest_1700 -0.6 -1.8 Transcriptional regulator compare
Psest_0737 -0.6 -0.7 Cu(I)-responsive transcriptional regulator compare
Psest_2933 -0.6 -4.1 Signal transduction histidine kinase compare
Psest_2744 -0.6 -1.2 Uncharacterized conserved protein compare
Psest_1818 -0.6 -4.0 GDP-mannose 4,6-dehydratase compare
Psest_3960 -0.6 -0.5 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0279 -0.6 -2.5 methionine biosynthesis protein MetW compare
Psest_2899 -0.6 -1.1 hypothetical protein compare
Psest_4225 -0.6 -4.6 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent compare
Psest_3173 -0.6 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_0999 -0.6 -1.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3864 -0.6 -4.1 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_4051 -0.6 -1.3 molybdenum-pterin binding domain compare
Psest_1367 -0.6 -2.2 hypothetical protein compare
Psest_1486 -0.6 -1.4 hypothetical protein compare
Psest_1474 -0.6 -0.4 phosphoribosylaminoimidazole synthetase compare
Psest_4098 -0.6 -1.5 Superfamily I DNA and RNA helicases compare
Psest_0063 -0.6 -0.9 tryptophan synthase, beta subunit compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in metal limitation experiments

For metal limitation Sodium nitrite across organisms