Experiment set16IT065 for Pseudomonas stutzeri RCH2

Compare to:

Lactate-nitrate; anaerobic; cadmium stress sample3

200 most important genes:

  gene name fitness t score description  
Psest_2988 -4.6 -9.7 aspartate kinase, monofunctional class compare
Psest_3490 -4.3 -4.1 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_3479 -4.2 -9.1 molybdenum cofactor synthesis domain compare
Psest_3480 -4.0 -3.8 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_3483 -3.6 -9.6 respiratory nitrate reductase, gamma subunit compare
Psest_1473 -3.6 -7.2 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2234 -3.5 -14.2 oxygen-independent coproporphyrinogen III oxidase compare
Psest_3485 -3.5 -16.3 nitrate reductase, beta subunit compare
Psest_3998 -3.5 -4.7 glutamate--cysteine ligase compare
Psest_3650 -3.5 -13.0 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3170 -3.4 -8.0 molybdenum cofactor biosynthesis protein MoaC compare
Psest_1292 -3.4 -6.7 monothiol glutaredoxin, Grx4 family compare
Psest_3486 -3.1 -20.8 respiratory nitrate reductase, alpha subunit compare
Psest_3484 -3.1 -6.9 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_1961 -3.0 -9.6 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_0296 -2.9 -8.0 glutathione synthetase, prokaryotic compare
Psest_3647 -2.8 -1.9 Indole-3-glycerol phosphate synthase compare
Psest_2584 -2.8 -7.0 Phosphoribosylanthranilate isomerase compare
Psest_3168 -2.7 -3.7 Molybdopterin converting factor, large subunit compare
Psest_1115 -2.7 -3.7 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_3649 -2.6 -10.2 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0393 -2.5 -8.3 Methylase of chemotaxis methyl-accepting proteins compare
Psest_1496 -2.5 -1.3 Holliday junction DNA helicase, RuvA subunit compare
Psest_0508 -2.4 -7.5 gamma-glutamyl phosphate reductase compare
Psest_0520 -2.4 -1.2 hypothetical protein compare
Psest_3816 -2.4 -1.4 DNA-directed RNA polymerase, omega subunit compare
Psest_1663 -2.3 -4.3 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3489 -2.2 -10.1 hypothetical protein compare
Psest_3648 -2.2 -6.6 anthranilate phosphoribosyltransferase compare
Psest_2999 -2.1 -6.2 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_3384 -2.1 -7.3 glutamate 5-kinase compare
Psest_3488 -2.0 -4.2 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_0799 -2.0 -4.0 Uncharacterized protein involved in response to NO compare
Psest_0844 -2.0 -4.2 High-affinity Fe2+/Pb2+ permease compare
Psest_0952 -2.0 -2.8 Uncharacterized conserved protein compare
Psest_0193 -1.9 -2.2 conserved hypothetical protein compare
Psest_1814 -1.9 -13.2 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1657 -1.9 -2.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1805 -1.8 -3.1 integration host factor, beta subunit compare
Psest_2579 -1.8 -1.7 amidophosphoribosyltransferase compare
Psest_3000 -1.8 -5.0 molybdate ABC transporter, permease protein compare
Psest_3113 -1.8 -2.8 electron transport complex, RnfABCDGE type, B subunit compare
Psest_2225 -1.7 -4.6 Diacylglycerol kinase compare
Psest_1511 -1.7 -3.4 Predicted redox protein, regulator of disulfide bond formation compare
Psest_2104 -1.7 -1.1 IscR-regulated protein YhgI compare
Psest_0958 -1.7 -5.8 Oligoketide cyclase/lipid transport protein compare
Psest_3301 -1.7 -3.7 Predicted transcriptional regulator, BolA superfamily compare
Psest_0954 -1.7 -6.3 Fe-S oxidoreductase compare
Psest_2329 -1.6 -9.2 Transcriptional regulator compare
Psest_0257 -1.6 -2.6 Predicted Zn-dependent peptidases compare
Psest_0133 -1.6 -1.4 type VI secretion protein, VC_A0107 family compare
Psest_1655 -1.6 -2.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0827 -1.6 -11.3 Nitric oxide reductase large subunit compare
Psest_3231 -1.6 -2.1 hypothetical protein compare
Psest_2718 -1.6 -1.6 hypothetical protein compare
Psest_0814 -1.6 -2.2 MoxR-like ATPases compare
Psest_0828 -1.5 -6.5 Nitric oxide reductase activation protein compare
Psest_1012 -1.5 -2.9 Signal transduction histidine kinase compare
Psest_0060 -1.5 -2.5 Predicted Fe-S protein compare
Psest_0062 -1.5 -2.4 tryptophan synthase, alpha subunit compare
Psest_0740 -1.5 -2.1 Transcriptional regulator compare
Psest_2899 -1.5 -1.8 hypothetical protein compare
Psest_3482 -1.5 -4.2 Parvulin-like peptidyl-prolyl isomerase compare
Psest_0953 -1.4 -5.2 iron-sulfur cluster-binding protein compare
Psest_2088 -1.4 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_0826 -1.4 -6.4 Cytochrome c compare
Psest_1659 -1.4 -1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_2304 -1.4 -1.4 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1974 -1.4 -3.5 integration host factor, alpha subunit compare
Psest_4298 -1.4 -1.0 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_3762 -1.4 -4.4 iron donor protein CyaY compare
Psest_0959 -1.4 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_1813 -1.4 -7.1 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2067 -1.4 -2.0 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3487 -1.4 -7.1 Nitrate/nitrite transporter compare
Psest_2945 -1.3 -1.1 septum site-determining protein MinC compare
Psest_3001 -1.3 -4.6 molybdenum ABC transporter, ATP-binding protein compare
Psest_3115 -1.3 -5.1 electron transport complex, RnfABCDGE type, D subunit compare
Psest_0144 -1.3 -4.9 Fe-S cluster protector protein compare
Psest_1656 -1.3 -1.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0466 -1.3 -2.3 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0609 -1.2 -1.9 hypothetical protein compare
Psest_3112 -1.2 -3.2 electron transport complex, RnfABCDGE type, A subunit compare
Psest_3843 -1.2 -6.0 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_3042 -1.2 -1.2 Nitrate reductase cytochrome c-type subunit compare
Psest_1326 -1.2 -3.7 Uncharacterized conserved protein compare
Psest_3114 -1.2 -4.7 electron transport complex, RnfABCDGE type, C subunit compare
Psest_2023 -1.2 -2.5 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_0988 -1.1 -3.1 Protein of unknown function (DUF2845). compare
Psest_0716 -1.1 -2.1 Protein of unknown function (DUF3094). compare
Psest_3317 -1.1 -3.1 Phosphotransferase System HPr (HPr) Family compare
Psest_1994 -1.1 -2.6 Amidases related to nicotinamidase compare
Psest_1920 -1.1 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_2561 -1.1 -0.9 hypothetical protein compare
Psest_4003 -1.1 -3.6 TIGR00153 family protein compare
Psest_3117 -1.1 -2.6 electron transport complex, RnfABCDGE type, E subunit compare
Psest_4280 -1.1 -3.3 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_3092 -1.1 -1.2 ribonuclease III, bacterial compare
Psest_0842 -1.0 -1.3 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_3357 -1.0 -2.2 Predicted pyrophosphatase compare
Psest_4316 -1.0 -2.5 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_4134 -1.0 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_1999 -1.0 -0.8 pseudouridine synthase compare
Psest_0031 -1.0 -1.4 Uncharacterized conserved protein compare
Psest_0078 -1.0 -0.9 hypothetical protein compare
Psest_0170 -1.0 -3.7 5,10-methenyltetrahydrofolate synthetase compare
Psest_0998 -1.0 -1.5 poly(A) polymerase compare
Psest_3565 -1.0 -1.2 hypothetical protein compare
Psest_1082 -1.0 -1.8 Enoyl-CoA hydratase/carnithine racemase compare
Psest_0390 -1.0 -2.1 Short-chain dehydrogenases of various substrate specificities compare
Psest_0086 -1.0 -2.0 hypothetical protein compare
Psest_3562 -1.0 -2.0 ABC-type antimicrobial peptide transport system, ATPase component compare
Psest_1295 -0.9 -3.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1619 -0.9 -2.7 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 compare
Psest_0152 -0.9 -3.6 Imidazoleglycerol-phosphate dehydratase compare
Psest_0999 -0.9 -1.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0837 -0.9 -2.4 Putative lipid carrier protein compare
Psest_0357 -0.9 -2.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_4345 -0.9 -3.6 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_1724 -0.9 -1.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0300 -0.9 -4.9 Methyl-accepting chemotaxis protein compare
Psest_2744 -0.9 -1.5 Uncharacterized conserved protein compare
Psest_3008 -0.9 -2.7 cobyric acid synthase CobQ compare
Psest_2491 -0.9 -3.0 succinyl-CoA synthetase, beta subunit compare
Psest_2645 -0.9 -3.4 Transcriptional regulator compare
Psest_0708 -0.9 -0.6 outer membrane assembly lipoprotein YfiO compare
Psest_2590 -0.9 -0.8 3-isopropylmalate dehydratase, small subunit compare
Psest_0155 -0.9 -3.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0855 -0.9 -2.8 NAD-dependent aldehyde dehydrogenases compare
Psest_2285 -0.9 -2.1 ATP-dependent protease La compare
Psest_0722 -0.9 -3.5 Predicted ATPase compare
Psest_3927 -0.9 -3.0 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_0744 -0.8 -0.8 Uncharacterized conserved protein compare
Psest_2668 -0.8 -3.0 Lactoylglutathione lyase and related lyases compare
Psest_4126 -0.8 -2.1 Predicted peroxiredoxins compare
Psest_3047 -0.8 -0.8 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_0515 -0.8 -1.7 rare lipoprotein A compare
Psest_3395 -0.8 -0.9 hypothetical protein compare
Psest_0835 -0.8 -5.6 Collagenase and related proteases compare
Psest_0919 -0.8 -1.8 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_2173 -0.8 -2.6 competence/damage-inducible protein CinA C-terminal domain compare
Psest_1997 -0.8 -2.0 6-phosphogluconolactonase compare
Psest_3174 -0.8 -5.2 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_3720 -0.8 -4.9 penicillin-binding protein, 1A family compare
Psest_0442 -0.8 -1.9 ATPases of the AAA+ class compare
Psest_2626 -0.8 -1.7 Flp pilus assembly protein CpaB compare
Psest_2490 -0.8 -4.4 succinyl-CoA synthetase, alpha subunit compare
Psest_1819 -0.8 -6.0 Nucleoside-diphosphate-sugar epimerases compare
Psest_1249 -0.8 -2.3 serine O-acetyltransferase compare
Psest_2333 -0.8 -0.7 Protein of unknown function (DUF3359). compare
Psest_1532 -0.8 -2.1 DNA recombination-dependent growth factor C compare
Psest_3400 -0.8 -0.9 Copper resistance protein D. compare
Psest_2265 -0.8 -1.4 Outer membrane protein compare
Psest_2725 -0.8 -1.9 hypothetical protein compare
Psest_3784 -0.8 -1.6 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_0537 -0.8 -1.5 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_0299 -0.8 -2.3 Chemotaxis signal transduction protein compare
Psest_3323 -0.8 -2.8 ribonuclease, Rne/Rng family compare
Psest_4100 -0.8 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_0993 -0.8 -4.2 Glucose-6-phosphate isomerase compare
Psest_3275 -0.7 -2.3 Stringent starvation protein B compare
Psest_0608 -0.7 -3.4 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Psest_1940 -0.7 -1.9 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_4303 -0.7 -1.3 HEAT repeat. compare
Psest_3143 -0.7 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_2437 -0.7 -1.8 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) (from data) compare
Psest_2280 -0.7 -2.7 Predicted membrane protein compare
Psest_4124 -0.7 -2.1 hypothetical protein compare
Psest_3413 -0.7 -2.0 hypothetical protein compare
Psest_0592 -0.7 -1.4 hypothetical protein compare
Psest_2320 -0.7 -3.4 2-methylcitrate synthase/citrate synthase II compare
Psest_1242 -0.7 -1.2 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2848 -0.7 -1.2 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_2682 -0.7 -2.6 fumarate hydratase, class II compare
Psest_1985 -0.7 -2.7 histidinol-phosphate aminotransferase compare
Psest_3422 -0.7 -2.2 hypothetical protein compare
Psest_3780 -0.7 -1.4 Transcriptional regulator compare
Psest_0212 -0.7 -0.9 exodeoxyribonuclease V, gamma subunit compare
Psest_2083 -0.7 -2.5 Putative sterol carrier protein compare
Psest_0334 -0.7 -1.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1989 -0.7 -2.9 Transcriptional regulators compare
Psest_0836 -0.7 -2.8 Collagenase and related proteases compare
Psest_3862 -0.7 -4.1 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2324 -0.7 -4.0 hypothetical protein compare
Psest_2771 -0.7 -1.4 Predicted membrane protein compare
Psest_2651 -0.7 -0.4 DNA topoisomerase I, bacterial compare
Psest_3925 -0.7 -2.3 Methyl-accepting chemotaxis protein compare
Psest_4267 -0.7 -2.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1176 -0.7 -1.8 Urea transporter compare
Psest_1518 -0.6 -1.6 tRNA_Ser_CGA compare
Psest_3145 -0.6 -0.9 hypothetical protein compare
Psest_4090 -0.6 -2.1 diaminobutyrate acetyltransferase compare
Psest_1840 -0.6 -5.9 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_3546 -0.6 -0.4 Phosphatidylglycerophosphatase A and related proteins compare
Psest_2218 -0.6 -2.4 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Psest_2323 -0.6 -3.4 Uncharacterized protein conserved in archaea compare
Psest_2322 -0.6 -2.3 Transcriptional regulators compare
Psest_0987 -0.6 -1.2 Predicted periplasmic or secreted lipoprotein compare
Psest_4078 -0.6 -0.9 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_2091 -0.6 -1.8 Molecular chaperone (small heat shock protein) compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in stress experiments

For stress Cadmium chloride hemipentahydrate across organisms