Experiment set16IT018 for Pseudomonas putida KT2440

Compare to:

L-Leucine carbon source

200 most important genes:

  gene name fitness t score description  
PP_0293 -4.4 -3.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4403 -4.1 -6.8 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex conserved
PP_4695 -4.0 -7.2 Sensory box histidine kinase compare
PP_4814 -3.8 -3.3 ATP-dependent protease La domain protein compare
PP_4116 -3.7 -9.7 isocitrate lyase compare
PP_4064 -3.7 -10.4 isovaleryl-CoA dehydrogenase conserved
PP_4678 -3.7 -11.2 Ketol-acid reductoisomerase compare
PP_4680 -3.6 -11.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4679 -3.6 -5.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4909 -3.6 -5.5 phosphoserine phosphatase compare
PP_0691 -3.6 -3.5 Glutamate 5-kinase compare
PP_4067 -3.5 -8.1 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_5185 -3.5 -4.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2868 -3.4 -5.7 Transcriptional regulator, Cro/CI family compare
PP_1319 -3.3 -5.5 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4065 -3.3 -7.3 methylcrotonyl-CoA carboxylase biotin-containing subunit beta conserved
PP_0949 -3.2 -4.9 putative ATP-binding protein UPF0042 compare
PP_3511 -3.2 -7.2 Branched-chain-amino-acid aminotransferase compare
PP_1328 -3.2 -3.1 Protein MraZ compare
PP_5289 -3.2 -3.8 Acetylglutamate kinase compare
PP_0422 -3.2 -4.8 Indole-3-glycerol phosphate synthase compare
PP_4401 -3.1 -7.0 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit conserved
PP_4400 -3.1 -5.8 Bkd operon transcriptional regulator conserved
PP_4402 -3.0 -9.5 branched-chain alpha-keto acid dehydrogenase complex, beta subunit conserved
PP_5155 -3.0 -4.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4999 -3.0 -2.1 dihydroorotase-like protein compare
PP_4723 -3.0 -11.8 Carbamoyl-phosphate synthase large chain compare
PP_0356 -2.9 -6.6 malate synthase G compare
PP_2217 -2.9 -3.4 enoyl-CoA hydratase compare
PP_2029 -2.9 -2.8 von Willebrand factor type A domain protein compare
PP_1088 -2.8 -7.3 Argininosuccinate synthase compare
PP_1233 -2.8 -4.7 sulfurtransferase compare
PP_5145 -2.8 -16.4 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0834 -2.8 -2.4 Sec translocation complex subunit YajC compare
PP_2302 -2.8 -2.7 DNA-binding, ATP-dependent protease compare
PP_0184 -2.7 -4.6 Argininosuccinate lyase compare
PP_2414 -2.7 -2.4 conserved exported protein of unknown function compare
PP_2433 -2.6 -1.5 conserved protein of unknown function compare
PP_2168 -2.6 -8.2 Transaldolase compare
PP_1995 -2.6 -6.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0082 -2.6 -3.5 tryptophan synthase alpha chain compare
PP_2001 -2.6 -7.7 O-succinylhomoserine sulfhydrylase compare
PP_0083 -2.5 -4.5 tryptophan synthase beta chain compare
PP_5095 -2.5 -1.7 pyrroline-5-carboxylate reductase compare
PP_0290 -2.5 -5.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1317 -2.5 -4.9 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_0025 -2.4 -1.9 hypothetical protein compare
PP_0289 -2.4 -4.9 Imidazoleglycerol-phosphate dehydratase compare
PP_4782 -2.4 -4.6 Phosphomethylpyrimidine kinase compare
PP_0362 -2.4 -8.7 Biotin synthase compare
PP_0967 -2.3 -7.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4122 -2.3 -2.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1348 -2.3 -5.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4952 -2.3 -2.2 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_0417 -2.3 -11.5 Anthranilate synthase component 1 compare
PP_4726 -2.2 -2.2 Chaperone protein DnaJ compare
PP_1079 -2.2 -4.7 Ornithine carbamoyltransferase compare
PP_5014 -2.2 -2.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_4004 -2.2 -2.5 DNA translocase FtsK compare
PP_5097 -2.2 -8.3 homoserine O-acetyltransferase compare
PP_2370 -2.1 -2.9 conserved protein of unknown function compare
PP_4696 -2.1 -4.0 Nitrogen regulation protein NR(I) compare
PP_5128 -2.1 -5.3 Dihydroxy-acid dehydratase compare
PP_4699 -2.1 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4124 -2.0 -1.4 NADH-quinone oxidoreductase subunit G compare
PP_2337 -2.0 -2.0 aconitate isomerase compare
PP_3649 -2.0 -2.4 Transcriptional regulator, GntR family compare
PP_5659 -2.0 -1.8 protein of unknown function compare
PP_3447 -2.0 -1.5 conserved membrane protein of unknown function compare
PP_1137 -2.0 -5.9 high-affinity branched-chain amino acid transporter, ATP binding conserved
PP_0421 -2.0 -5.3 Anthranilate phosphoribosyltransferase compare
PP_5055 -2.0 -3.5 Sulfurtransferase compare
PP_5104 -2.0 -5.3 thiazole synthase compare
PP_4722 -1.9 -3.2 Transcription elongation factor GreA compare
PP_1318 -1.9 -5.7 Cytochrome b compare
PP_0152 -1.9 -1.6 conserved exported protein of unknown function compare
PP_0292 -1.9 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4799 -1.9 -1.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4120 -1.9 -1.3 NADH-quinone oxidoreductase subunit B compare
PP_1428 -1.9 -2.2 Sigma factor AlgU negative regulatory protein compare
PP_1138 -1.9 -3.0 branched chain amino acid transporter - ATP binding subunit compare
PP_3532 -1.9 -2.0 Transcriptional regulator, AsnC family compare
PP_2748 -1.9 -3.0 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_4724 -1.9 -3.6 Carbamoyl-phosphate synthase small chain compare
PP_4362 -1.8 -2.2 conserved protein of unknown function compare
PP_2313 -1.8 -1.5 conserved membrane protein of unknown function compare
PP_4268 -1.8 -1.7 nucleoid-associated broad specificity regulator compare
PP_1512 -1.8 -2.6 conserved protein of unknown function compare
PP_4864 -1.8 -8.2 High-affinity branched-chain amino acid transport ATP-binding protein BraF conserved
PP_4320 -1.7 -3.8 cytochrome c-type biogenesis protein compare
PP_1826 -1.7 -1.8 Hydrolase, isochorismatase family compare
PP_4179 -1.7 -6.1 Chaperone protein HtpG compare
PP_3392 -1.7 -2.0 conserved protein of unknown function compare
PP_1664 -1.7 -3.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_5393 -1.7 -1.6 putative metal-binding chaperone compare
PP_4060 -1.7 -9.3 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4131 -1.7 -3.2 NADH-quinone oxidoreductase subunit N compare
PP_4866 -1.7 -7.7 High-affinity branched-chain amino acid transport system permease protein BraD conserved
PP_4129 -1.7 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_3603 -1.6 -4.8 Transcriptional regulator, GntR family compare
PP_0966 -1.6 -5.5 Histidinol dehydrogenase compare
PP_4666 -1.6 -2.9 3-hydroxyisobutyrate dehydrogenase compare
PP_4066 -1.6 -2.8 methylglutaconyl-CoA hydratase compare
PP_2403 -1.6 -1.9 Chemotaxis protein CheY compare
PP_1716 -1.6 -1.6 Transcriptional regulator, Cro/CI family compare
PP_4863 -1.6 -7.0 high-affinity branched-chain amino acid transporter, ATP-binding conserved
PP_3408 -1.6 -2.8 cobalt transporter subunit A compare
PP_1778 -1.6 -3.6 Lipopolysaccharide ABC export system, permease protein compare
PP_1140 -1.6 -6.8 branched chain amino acid transporter - permease subunit conserved
PP_0965 -1.6 -5.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4121 -1.6 -2.1 NADH-quinone oxidoreductase subunit C/D compare
PP_4329 -1.5 -1.6 FlhB domain protein compare
PP_4254 -1.5 -2.0 conserved protein of unknown function compare
PP_5098 -1.5 -4.9 methionine biosynthesis protein MetW compare
PP_2378 -1.5 -1.5 Fe/S biogenesis protein NfuA compare
PP_0396 -1.5 -7.9 conserved protein of unknown function compare
PP_5644 -1.5 -2.5 conserved membrane protein of unknown function compare
PP_1381 -1.5 -1.4 4-carboxymuconolactone decarboxylase compare
PP_0878 -1.5 -4.2 dipeptide ABC transporter, binding subunit compare
PP_1216 -1.5 -1.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5114 -1.5 -1.4 putative adenine methyltransferase compare
PP_0872 -1.5 -4.6 Peptide chain release factor 3 compare
PP_3110 -1.5 -2.0 protein of unknown function compare
PP_4364 -1.5 -2.6 putative Anti-sigma F factor antagonist compare
PP_0948 -1.4 -1.9 Phosphocarrier protein HPr compare
PP_3999 -1.4 -4.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5274 -1.4 -1.5 conserved protein of unknown function compare
PP_2773 -1.4 -1.8 conserved protein of unknown function compare
PP_4940 -1.4 -3.8 Putative glycosyltransferase compare
PP_2416 -1.4 -2.4 putative Iron ABC transporter, ATP-binding protein compare
PP_4865 -1.4 -6.0 High-affinity branched-chain amino acid transport system permease protein BraE conserved
PP_1141 -1.3 -4.2 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit conserved
PP_1198 -1.3 -2.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4700 -1.3 -1.3 pantothenate synthetase compare
PP_2136 -1.3 -2.9 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4126 -1.3 -0.9 NADH-quinone oxidoreductase subunit I compare
PP_4130 -1.3 -2.9 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4528 -1.3 -1.6 conserved protein of unknown function compare
PP_1139 -1.3 -6.5 branched chain amino acid transporter - permease subunit conserved
PP_0395 -1.3 -6.8 putative type IV piliation protein compare
PP_0420 -1.3 -4.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4532 -1.3 -1.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1231 -1.3 -3.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4922 -1.3 -5.5 Phosphomethylpyrimidine synthase compare
PP_2324 -1.3 -5.3 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_5328 -1.3 -1.6 putative phosphate transport system permease protein compare
PP_4984 -1.2 -5.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2307 -1.2 -2.3 conserved protein of unknown function compare
PP_t49 -1.2 -2.9 tRNA-Met compare
PP_1410 -1.2 -1.3 conserved protein of unknown function compare
PP_0879 -1.2 -3.5 dipeptide ABC transporter - putative ATP binding subunit compare
PP_3715 -1.2 -1.6 Muconate cycloisomerase 1 compare
PP_0397 -1.2 -7.5 protein kinase compare
PP_0425 -1.2 -1.9 conserved protein of unknown function compare
PP_1654 -1.2 -1.6 cysteine synthase B compare
PP_2371 -1.2 -3.6 Sulphite reductase hemoprotein, beta subunit compare
PP_3539 -1.2 -2.2 putative Transcriptional regulator compare
PP_5359 -1.2 -1.4 CobW/P47K family protein compare
PP_1493 -1.2 -2.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4098 -1.2 -1.4 UvrABC system protein C compare
PP_1714 -1.2 -2.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
PP_1713 -1.1 -1.7 Transcriptional regulator PcaQ compare
PP_0881 -1.1 -2.8 dipeptide ABC transporter - putative membrane subunit compare
PP_4258 -1.1 -2.6 cytochrome c oxidase subunit, cbb3-type compare
PP_4797 -1.1 -1.3 conserved protein of unknown function compare
PP_4379 -1.1 -2.5 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0365 -1.1 -4.9 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2080 -1.1 -6.7 NAD-specific glutamate dehydrogenase conserved
PP_4890 -1.1 -2.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_4545 -1.1 -3.2 beta-ketodecanoyl-(Acyl-carrier-protein) synthase compare
PP_1468 -1.1 -1.7 Tyrosine recombinase XerD compare
PP_0625 -1.1 -4.4 Chaperone protein ClpB compare
PP_2013 -1.1 -3.5 conserved protein of unknown function compare
PP_1396 -1.1 -2.9 conserved protein of unknown function compare
PP_4505 -1.1 -3.0 Sensor histidine kinase compare
PP_4693 -1.1 -2.5 RNA polymerase-binding transcription factor DksA compare
PP_4471 -1.1 -2.4 Magnesium transporter compare
PP_0125 -1.1 -2.3 putative cytochrome c-type protein compare
PP_4910 -1.1 -1.2 conserved protein of unknown function compare
PP_0406 -1.1 -3.6 Nucleotidyltransferase family protein compare
PP_0164 -1.1 -3.8 conserved protein of unknown function compare
PP_5230 -1.1 -1.5 Tyrosine recombinase XerC compare
PP_1309 -1.1 -2.9 conserved exported protein of unknown function compare
PP_0345 -1.1 -2.4 putative Heptose kinase WapP compare
PP_1764 -1.0 -2.7 Phosphoglycolate phosphatase 2 compare
PP_0126 -1.0 -2.3 Cytochrome c4 compare
PP_1076 -1.0 -3.1 aquaglyceroporin compare
PP_3098 -1.0 -1.1 conserved protein of unknown function compare
PP_1041 -1.0 -1.4 twin arginine protein export complex subunit compare
PP_4419 -1.0 -2.0 transposase compare
PP_0775 -1.0 -1.4 conserved protein of unknown function compare
PP_3341 -1.0 -2.7 nickel-responsive regulator compare
PP_0236 -1.0 -1.8 NAD(P)H-dependent FMN reductase subunit compare
PP_2027 -1.0 -2.7 conserved exported protein of unknown function compare
PP_1598 -1.0 -2.7 regulatory intramembrane protein RIP zinc protease compare
PP_5027 -1.0 -0.8 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_3647 -1.0 -2.2 putative Oxidoreductase compare
PP_4867 -1.0 -4.6 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) conserved
PP_1082 -1.0 -2.5 bacterioferritin compare
PP_5445 -1.0 -1.6 conserved protein of unknown function compare


Specific Phenotypes

For 27 genes in this experiment

For carbon source L-Leucine in Pseudomonas putida KT2440

For carbon source L-Leucine across organisms