Experiment set15S508 for Ralstonia sp. UNC404CL21Col

Compare to:

D-Xylose carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS08630 -5.3 -5.2 dihydroorotase compare
ABZR87_RS09465 -4.8 -10.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS14500 -3.9 -17.4 tryptophan synthase subunit beta compare
ABZR87_RS10610 -3.8 -3.6 inositol monophosphatase family protein compare
ABZR87_RS02590 -3.7 -10.8 3-dehydroquinate synthase compare
ABZR87_RS16180 -3.7 -4.4 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS13790 -3.7 -9.7 chorismate synthase compare
ABZR87_RS07380 -3.5 -19.4 FAD/FMN-binding oxidoreductase compare
ABZR87_RS09935 -3.5 -4.1 amino acid aminotransferase compare
ABZR87_RS02595 -3.5 -12.5 shikimate kinase compare
ABZR87_RS16170 -3.4 -7.3 argininosuccinate lyase compare
ABZR87_RS02160 -3.4 -8.3 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS00835 -3.4 -7.6 argininosuccinate synthase compare
ABZR87_RS13250 -3.3 -4.7 phosphoserine phosphatase SerB compare
ABZR87_RS05170 -3.2 -3.1 acetylglutamate kinase compare
ABZR87_RS09615 -3.1 -3.7 50S ribosomal protein L19 compare
ABZR87_RS08625 -3.0 -2.1 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS14505 -3.0 -5.9 phosphoribosylanthranilate isomerase compare
ABZR87_RS09445 -3.0 -12.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS15440 -2.9 -5.8 ribonuclease G compare
ABZR87_RS05100 -2.8 -7.3 RNA polymerase-binding protein DksA compare
ABZR87_RS14540 -2.8 -8.6 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS01615 -2.7 -2.9 RNB domain-containing ribonuclease compare
ABZR87_RS07050 -2.7 -1.8 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS00435 -2.7 -10.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS14955 -2.7 -9.4 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS12790 -2.6 -3.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS10240 -2.6 -2.5 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS01285 -2.5 -2.0 preprotein translocase subunit YajC compare
ABZR87_RS14115 -2.5 -3.2 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS02155 -2.4 -7.5 anthranilate phosphoribosyltransferase compare
ABZR87_RS14535 -2.4 -8.1 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS14530 -2.4 -10.2 3-isopropylmalate dehydrogenase compare
ABZR87_RS02570 -2.4 -18.5 glutamate synthase-related protein compare
ABZR87_RS13475 -2.4 -7.1 PAS domain S-box protein compare
ABZR87_RS02565 -2.4 -5.4 glutamate synthase subunit beta compare
ABZR87_RS14950 -2.4 -3.6 acetolactate synthase small subunit compare
ABZR87_RS02480 -2.4 -4.3 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS02145 -2.3 -2.4 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS13175 -2.3 -3.0 tRNA-Leu compare
ABZR87_RS06770 -2.3 -7.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS05015 -2.2 -7.6 penicillin-binding protein 2 compare
ABZR87_RS18245 -2.2 -7.2 fumarylacetoacetate hydrolase family protein conserved
ABZR87_RS12785 -2.2 -4.6 endopeptidase La compare
ABZR87_RS18260 -2.2 -7.9 IlvD/Edd family dehydratase conserved
ABZR87_RS21795 -2.1 -7.5 NUDIX domain-containing protein compare
ABZR87_RS15705 -2.1 -4.7 UvrD-helicase domain-containing protein compare
ABZR87_RS14490 -2.1 -11.0 tryptophan synthase subunit alpha compare
ABZR87_RS11440 -2.1 -7.7 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS05350 -2.1 -6.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS09515 -2.0 -1.4 cysteine synthase CysM compare
ABZR87_RS07625 -2.0 -3.9 Holliday junction branch migration protein RuvA compare
ABZR87_RS10785 -2.0 -6.0 exodeoxyribonuclease V subunit beta compare
ABZR87_RS12795 -2.0 -5.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS09450 -2.0 -7.9 prephenate dehydratase compare
ABZR87_RS04940 -1.9 -5.5 PAS domain-containing sensor histidine kinase compare
ABZR87_RS00185 -1.9 -4.7 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS02140 -1.9 -13.1 anthranilate synthase component I compare
ABZR87_RS09710 -1.9 -4.4 tRNA-Arg compare
ABZR87_RS18235 -1.9 -6.3 SDR family oxidoreductase conserved
ABZR87_RS07360 -1.8 -10.7 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS11125 -1.8 -6.9 cell division protein ZapE compare
ABZR87_RS06715 -1.8 -2.7 PTS sugar transporter subunit IIA compare
ABZR87_RS02655 -1.8 -8.3 anti-sigma factor compare
ABZR87_RS05025 -1.8 -2.9 rod shape-determining protein MreC compare
ABZR87_RS00195 -1.8 -4.7 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS13300 -1.8 -7.9 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS10780 -1.8 -4.8 PD-(D/E)XK nuclease family protein compare
ABZR87_RS00200 -1.7 -5.4 phosphoadenylyl-sulfate reductase compare
ABZR87_RS02850 -1.7 -3.2 elongation factor Tu compare
ABZR87_RS16960 -1.7 -4.2 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS08695 -1.6 -9.5 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS00210 -1.6 -9.1 nitrite/sulfite reductase compare
ABZR87_RS09635 -1.6 -2.8 ribosome small subunit-dependent GTPase A compare
ABZR87_RS08700 -1.6 -5.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS04125 -1.6 -5.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS18215 -1.6 -7.4 DNA-binding transcriptional regulator conserved
ABZR87_RS22920 -1.5 -3.7 phosphogluconate dehydratase compare
ABZR87_RS05010 -1.5 -4.6 rod shape-determining protein RodA compare
ABZR87_RS14330 -1.5 -1.3 hypothetical protein compare
ABZR87_RS11015 -1.5 -6.1 amino-acid N-acetyltransferase compare
ABZR87_RS00970 -1.5 -2.2 molecular chaperone DnaJ compare
ABZR87_RS01110 -1.5 -6.4 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS00190 -1.5 -9.0 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS21940 -1.5 -1.2 hypothetical protein compare
ABZR87_RS06395 -1.5 -5.1 response regulator compare
ABZR87_RS16125 -1.5 -6.3 heme biosynthesis protein HemY compare
ABZR87_RS08655 -1.5 -4.2 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS01450 -1.4 -2.3 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR87_RS18225 -1.4 -7.5 D-xylose ABC transporter ATP-binding protein conserved
ABZR87_RS06495 -1.4 -2.6 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS00205 -1.4 -1.8 DUF934 domain-containing protein compare
ABZR87_RS07705 -1.4 -3.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS22970 -1.4 -8.7 cystathionine gamma-synthase family protein compare
ABZR87_RS01810 -1.4 -2.9 glutamate 5-kinase compare
ABZR87_RS21095 -1.3 -1.2 TRAP transporter small permease compare
ABZR87_RS11940 -1.3 -3.0 SsrA-binding protein SmpB compare
ABZR87_RS17595 -1.3 -2.4 hypothetical protein compare
ABZR87_RS14675 -1.3 -1.2 glyoxalase compare
ABZR87_RS01980 -1.3 -2.5 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS10175 -1.3 -4.6 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS18230 -1.3 -4.5 sugar ABC transporter permease conserved
ABZR87_RS05590 -1.3 -1.5 orotate phosphoribosyltransferase compare
ABZR87_RS00875 -1.3 -5.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS04865 -1.2 -4.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS18240 -1.2 -4.6 SMP-30/gluconolactonase/LRE family protein conserved
ABZR87_RS05200 -1.2 -9.3 homoserine O-acetyltransferase compare
ABZR87_RS00220 -1.2 -4.9 CysB family HTH-type transcriptional regulator compare
ABZR87_RS10170 -1.2 -2.9 RseA family anti-sigma factor compare
ABZR87_RS14510 -1.2 -3.4 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS10120 -1.2 -2.4 YceD family protein compare
ABZR87_RS12800 -1.1 -5.9 trigger factor compare
ABZR87_RS01555 -1.1 -1.0 barstar family protein compare
ABZR87_RS04945 -1.1 -1.6 DUF4390 domain-containing protein compare
ABZR87_RS12150 -1.1 -2.7 6-carboxytetrahydropterin synthase QueD compare
ABZR87_RS07510 -1.1 -3.6 LysR family transcriptional regulator compare
ABZR87_RS00285 -1.1 -1.4 acetylornithine transaminase compare
ABZR87_RS06250 -1.1 -1.9 hydroxymethylglutaryl-CoA lyase compare
ABZR87_RS07620 -1.1 -3.3 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS08640 -1.1 -3.9 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS18220 -1.0 -5.4 D-xylose ABC transporter substrate-binding protein conserved
ABZR87_RS07035 -1.0 -6.0 RNase adapter RapZ compare
ABZR87_RS05645 -1.0 -2.6 SDR family oxidoreductase compare
ABZR87_RS13350 -1.0 -3.6 potassium transporter Kup compare
ABZR87_RS20880 -1.0 -5.2 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS11370 -1.0 -3.9 DUF47 domain-containing protein compare
ABZR87_RS16990 -1.0 -3.0 5'-methylthioadenosine/adenosylhomocysteine nucleosidase compare
ABZR87_RS13415 -1.0 -5.2 IclR family transcriptional regulator compare
ABZR87_RS07700 -1.0 -1.4 peptidylprolyl isomerase compare
ABZR87_RS17865 -1.0 -1.8 cation:proton antiporter compare
ABZR87_RS16845 -0.9 -1.0 hypothetical protein compare
ABZR87_RS04785 -0.9 -6.2 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS09700 -0.9 -3.9 DEAD/DEAH box helicase compare
ABZR87_RS11195 -0.9 -5.4 pseudouridine synthase compare
ABZR87_RS12260 -0.9 -1.8 (2Fe-2S)-binding protein compare
ABZR87_RS16735 -0.9 -7.6 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS04270 -0.9 -3.0 4a-hydroxytetrahydrobiopterin dehydratase compare
ABZR87_RS11980 -0.9 -1.1 cold-shock protein compare
ABZR87_RS13285 -0.9 -6.4 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS13315 -0.9 -5.7 RluA family pseudouridine synthase compare
ABZR87_RS10045 -0.9 -1.8 lactate utilization protein C compare
ABZR87_RS17565 -0.9 -1.7 helix-turn-helix transcriptional regulator compare
ABZR87_RS00795 -0.9 -2.6 site-specific tyrosine recombinase XerD compare
ABZR87_RS06855 -0.9 -2.4 RNA polymerase sigma factor RpoH compare
ABZR87_RS20785 -0.9 -1.0 DUF2783 domain-containing protein compare
ABZR87_RS11790 -0.8 -2.4 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS21245 -0.8 -1.0 1,2-phenylacetyl-CoA epoxidase subunit PaaD compare
ABZR87_RS23380 -0.8 -1.5 chemotaxis protein CheW compare
ABZR87_RS22910 -0.8 -1.0 6-phosphogluconolactonase compare
ABZR87_RS23265 -0.8 -2.1 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS01675 -0.8 -1.5 carbohydrate kinase family protein compare
ABZR87_RS10700 -0.8 -4.4 C40 family peptidase compare
ABZR87_RS03780 -0.8 -0.8 thiosulfate oxidation carrier protein SoxY compare
ABZR87_RS02320 -0.8 -2.2 cytochrome o ubiquinol oxidase subunit IV compare
ABZR87_RS16130 -0.8 -2.6 fused uroporphyrinogen-III synthase HemD/membrane protein HemX compare
ABZR87_RS07965 -0.8 -3.6 recombinase RecA compare
ABZR87_RS01645 -0.8 -2.3 type II 3-dehydroquinate dehydratase compare
ABZR87_RS04995 -0.8 -1.7 DNA topoisomerase III compare
ABZR87_RS05065 -0.7 -2.8 tyrosine recombinase XerC compare
ABZR87_RS13645 -0.7 -0.7 hypothetical protein compare
ABZR87_RS21365 -0.7 -1.1 ligase-associated DNA damage response endonuclease PdeM compare
ABZR87_RS22485 -0.7 -2.9 FAD-dependent oxidoreductase compare
ABZR87_RS16660 -0.7 -3.6 helix-turn-helix domain-containing protein compare
ABZR87_RS10525 -0.7 -0.7 L-threonylcarbamoyladenylate synthase compare
ABZR87_RS09625 -0.7 -4.9 CobD/CbiB family protein compare
ABZR87_RS08665 -0.7 -3.6 GNAT family N-acetyltransferase compare
ABZR87_RS03420 -0.7 -0.7 type II secretion system minor pseudopilin GspI compare
ABZR87_RS20875 -0.7 -4.2 LysR family transcriptional regulator compare
ABZR87_RS04190 -0.7 -1.0 hypothetical protein compare
ABZR87_RS11375 -0.7 -4.6 inorganic phosphate transporter compare
ABZR87_RS10565 -0.7 -2.6 cupin domain-containing protein compare
ABZR87_RS12065 -0.7 -2.1 L-rhamnose mutarotase compare
ABZR87_RS11755 -0.7 -1.8 arsenate reductase compare
ABZR87_RS08650 -0.7 -4.6 dTDP-4-dehydrorhamnose reductase compare
ABZR87_RS09035 -0.6 -2.7 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS10620 -0.6 -1.8 serine O-acetyltransferase compare
ABZR87_RS02575 -0.6 -4.1 transposase compare
ABZR87_RS00325 -0.6 -1.3 peptidylprolyl isomerase compare
ABZR87_RS06745 -0.6 -2.9 S41 family peptidase compare
ABZR87_RS02220 -0.6 -4.4 redox-regulated ATPase YchF compare
ABZR87_RS22165 -0.6 -1.9 flagellar export chaperone FliS compare
ABZR87_RS21815 -0.6 -0.7 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS05570 -0.6 -3.5 lysophospholipid acyltransferase family protein compare
ABZR87_RS08985 -0.6 -4.0 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS16730 -0.6 -3.1 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS09460 -0.6 -1.9 prephenate dehydrogenase compare
ABZR87_RS07635 -0.6 -1.4 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS08195 -0.6 -2.5 hypothetical protein compare
ABZR87_RS22415 -0.6 -1.3 universal stress protein compare
ABZR87_RS10190 -0.6 -3.5 translation elongation factor 4 compare
ABZR87_RS14965 -0.6 -1.3 DUF3619 family protein compare
ABZR87_RS01145 -0.6 -1.7 glycolate oxidase subunit GlcE compare
ABZR87_RS01800 -0.6 -2.4 RNA pyrophosphohydrolase compare
ABZR87_RS08235 -0.6 -0.8 hypothetical protein compare
ABZR87_RS16795 -0.6 -2.3 VOC family protein compare
ABZR87_RS07430 -0.6 -1.3 FmdB family zinc ribbon protein compare
ABZR87_RS10195 -0.6 -1.5 signal peptidase I compare
ABZR87_RS08990 -0.6 -2.8 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS16360 -0.6 -2.4 YciI family protein compare
ABZR87_RS15775 -0.6 -1.5 4-carboxymuconolactone decarboxylase compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source D-Xylose in Ralstonia sp. UNC404CL21Col

For carbon source D-Xylose across organisms