Experiment set15IT091 for Pseudomonas fluorescens FW300-N2E3

Compare to:

D-Glucose

200 most detrimental genes:

  gene name fitness t score description  
AO353_21830 +3.2 30.9 chemotaxis protein CheY compare
AO353_02735 +2.9 27.6 chemotaxis protein CheY compare
AO353_19340 +2.7 25.0 amino acid ABC transporter substrate-binding protein compare
AO353_26390 +2.5 5.0 glyoxalase compare
AO353_01055 +2.5 23.3 AraC family transcriptional regulator compare
AO353_01060 +2.5 20.9 3-ketoacyl-ACP reductase compare
AO353_06155 +2.4 15.7 copper-transporting ATPase compare
AO353_10945 +2.3 7.8 cytochrome C compare
AO353_01065 +2.3 18.4 acetyl-CoA acetyltransferase compare
AO353_06160 +2.3 10.2 transcriptional regulator compare
AO353_01070 +2.3 21.8 poly(R)-hydroxyalkanoic acid synthase compare
AO353_22920 +2.3 9.0 GntR family transcriptional regulator compare
AO353_00635 +2.3 7.5 hypothetical protein compare
AO353_22860 +2.2 13.8 cytochrome C oxidase Cbb3 compare
AO353_15170 +2.2 12.3 cytochrome D ubiquinol oxidase subunit III compare
AO353_21620 +2.1 17.1 peptidylprolyl isomerase compare
AO353_21425 +2.0 7.0 hypothetical protein compare
AO353_05135 +1.9 10.0 toluene tolerance protein compare
AO353_00660 +1.9 6.1 transcriptional regulator compare
AO353_00900 +1.9 11.6 2-methylisocitrate lyase compare
AO353_00890 +1.9 10.3 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_01045 +1.8 9.4 phasin compare
AO353_11155 +1.8 16.4 thioesterase compare
AO353_20300 +1.7 11.0 anti-sigma factor compare
AO353_08995 +1.7 12.6 chemotaxis protein CheY compare
AO353_11160 +1.7 10.7 GntR family transcriptional regulator compare
AO353_16615 +1.6 12.4 RNA polymerase sigma factor RpoS compare
AO353_00600 +1.6 7.0 cytochrome C oxidase Cbb3 compare
AO353_18630 +1.5 11.2 beta-ketoacyl-ACP synthase compare
AO353_24130 +1.5 3.9 hypothetical protein compare
AO353_09945 +1.5 6.5 LysR family transcriptional regulator compare
AO353_16375 +1.5 2.6 hypothetical protein compare
AO353_00885 +1.5 5.2 3-methylitaconate isomerase compare
AO353_06585 +1.5 7.6 hypothetical protein compare
AO353_05145 +1.5 6.3 ABC transporter permease compare
AO353_26645 +1.4 4.1 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO353_05130 +1.4 1.5 anti-anti-sigma factor compare
AO353_04810 +1.4 2.4 hypothetical protein compare
AO353_03815 +1.4 2.4 heme utilization protein compare
AO353_09275 +1.4 4.4 DNA-directed RNA polymerase subunit omega compare
AO353_00330 +1.4 7.6 hypothetical protein compare
AO353_05150 +1.4 4.2 ABC transporter ATP-binding protein compare
AO353_11340 +1.4 2.5 MarR family transcriptional regulator compare
AO353_15290 +1.4 7.6 methyltransferase compare
AO353_16355 +1.4 6.9 TetR family transcriptional regulator compare
AO353_21245 +1.3 4.4 hypothetical protein compare
AO353_10990 +1.3 7.6 glutamate:protein symporter compare
AO353_14590 +1.3 2.5 serine kinase/phosphatase compare
AO353_09265 +1.3 2.6 hypothetical protein compare
AO353_12720 +1.3 3.3 hypothetical protein compare
AO353_10730 +1.3 1.4 hypothetical protein compare
AO353_03635 +1.3 5.9 mechanosensitive ion channel protein MscS compare
AO353_14990 +1.2 2.5 hypothetical protein compare
AO353_25570 +1.2 8.1 glycosyltransferase compare
AO353_15985 +1.2 5.6 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) compare
AO353_19335 +1.2 7.6 TetR family transcriptional regulator compare
AO353_27500 +1.2 2.1 hypothetical protein compare
AO353_14460 +1.2 5.5 competence protein TfoX compare
AO353_17665 +1.2 5.3 glycine cleavage system protein R compare
AO353_27890 +1.2 5.6 RpiR family transcriptional regulator compare
AO353_01220 +1.1 2.3 hypothetical protein compare
AO353_03520 +1.1 1.7 hypothetical protein compare
AO353_00590 +1.1 3.2 cytochrome C oxidase Cbb3 compare
AO353_05240 +1.1 1.7 rod shape-determining protein MreD compare
AO353_00195 +1.1 3.5 virion morphogenesis protein compare
AO353_13300 +1.1 2.4 LOG family protein compare
AO353_12870 +1.1 8.9 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO353_07105 +1.1 1.5 biotin--protein ligase compare
AO353_02465 +1.1 3.1 hypothetical protein compare
AO353_10445 +1.1 1.8 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_08965 +1.1 4.7 transcriptional regulator compare
AO353_12650 +1.1 1.1 hypothetical protein compare
AO353_21465 +1.1 3.4 cation:proton antiporter compare
AO353_19025 +1.1 8.1 acetyltransferase compare
AO353_13515 +1.1 3.7 Urease (EC 3.5.1.5) (from data) compare
AO353_05415 +1.1 1.7 hypothetical protein compare
AO353_08955 +1.1 4.7 transcriptional regulator compare
AO353_04180 +1.0 5.4 glycerol kinase compare
AO353_17855 +1.0 2.7 ribonuclease D compare
AO353_28960 +1.0 2.3 Fis family transcriptional regulator compare
AO353_17160 +1.0 2.5 aspartate-semialdehyde dehydrogenase compare
AO353_13800 +1.0 2.5 hypothetical protein compare
AO353_27180 +1.0 2.7 peptidase M48, Ste24p compare
AO353_19280 +1.0 2.2 hypothetical protein compare
AO353_05140 +1.0 5.2 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_20925 +1.0 1.0 hypothetical protein compare
AO353_20455 +1.0 2.5 HAD family hydrolase compare
AO353_28320 +1.0 2.7 aminopeptidase compare
AO353_20095 +1.0 3.2 histidine kinase compare
AO353_19215 +1.0 4.3 hypothetical protein compare
AO353_01595 +1.0 1.7 Flp pilus assembly protein CpaB compare
AO353_01190 +1.0 1.0 hypothetical protein compare
AO353_10085 +1.0 2.4 pyridoxamine kinase compare
AO353_16745 +1.0 2.8 ArsR family transcriptional regulator compare
AO353_12540 +1.0 1.9 hypothetical protein compare
AO353_10950 +1.0 6.3 thiol:disulfide interchange protein compare
AO353_19825 +1.0 5.5 shikimate dehydrogenase compare
AO353_04185 +1.0 4.0 DeoR family transcriptional regulator compare
AO353_26815 +0.9 2.2 transcriptional regulator compare
AO353_02620 +0.9 3.3 threonine-phosphate decarboxylase compare
AO353_01550 +0.9 3.1 hypothetical protein compare
AO353_21430 +0.9 2.7 hypothetical protein compare
AO353_28555 +0.9 1.5 LysR family transcriptional regulator compare
AO353_27905 +0.9 3.0 N-formylglutamate amidohydrolase compare
AO353_23780 +0.9 2.9 hydroxyacid dehydrogenase compare
AO353_10455 +0.9 1.6 tRNA modification GTPase MnmE compare
AO353_21420 +0.9 3.5 hypothetical protein compare
AO353_28235 +0.9 3.9 acetylornithine deacetylase compare
AO353_02995 +0.9 5.2 succinylglutamate desuccinylase compare
AO353_10725 +0.9 1.1 dodecin flavoprotein compare
AO353_25490 +0.9 2.4 transcriptional regulator compare
AO353_17750 +0.9 1.8 transcriptional regulator compare
AO353_19840 +0.9 1.8 hypothetical protein compare
AO353_07325 +0.9 1.6 diadenosine tetraphosphatase compare
AO353_22110 +0.9 3.0 nitrate reductase compare
AO353_12535 +0.9 2.6 hypothetical protein compare
AO353_13660 +0.9 4.9 tRNA-dihydrouridine synthase B compare
AO353_15885 +0.9 3.0 Cro/Cl family transcriptional regulator compare
AO353_08950 +0.9 3.1 hypothetical protein compare
AO353_03515 +0.9 1.7 cold-shock protein compare
AO353_02630 +0.9 2.5 5,6-dimethylbenzimidazole synthase compare
AO353_16495 +0.9 3.9 zinc metallopeptidase RseP compare
AO353_03400 +0.9 4.3 D-mannose isomerase (EC 5.3.1.7) (from data) compare
AO353_22195 +0.9 1.9 metal ABC transporter permease compare
AO353_12395 +0.9 1.9 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO353_29185 +0.9 2.3 TetR family transcriptional regulator compare
AO353_20350 +0.9 5.8 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
AO353_03085 +0.9 5.4 phospholipase compare
AO353_03000 +0.9 2.6 topoisomerase II compare
AO353_11780 +0.8 1.7 hypothetical protein compare
AO353_01075 +0.8 4.1 hypothetical protein compare
AO353_13405 +0.8 1.4 urease accessory protein UreF compare
AO353_05195 +0.8 5.0 glmZ(sRNA)-inactivating NTPase compare
AO353_09885 +0.8 2.6 transcriptional regulator PhoU compare
AO353_07645 +0.8 0.7 sarcosine oxidase subunit gamma compare
AO353_05530 +0.8 2.7 hypothetical protein compare
AO353_05230 +0.8 4.4 ribonuclease G compare
AO353_09215 +0.8 6.7 peptide ABC transporter substrate-binding protein compare
AO353_00460 +0.8 2.2 TetR family transcriptional regulator compare
AO353_04360 +0.8 4.3 protein-disulfide isomerase compare
AO353_21825 +0.8 3.7 GNAT family acetyltransferase compare
AO353_15285 +0.8 4.8 hypothetical protein compare
AO353_08075 +0.8 4.9 hemolysin III compare
AO353_03510 +0.8 3.2 glycine cleavage system protein T compare
AO353_07495 +0.8 6.1 acyl-CoA dehydrogenase compare
AO353_18505 +0.8 1.2 translation initiation factor 2 compare
AO353_09950 +0.8 3.3 aspartate ammonia-lyase compare
AO353_07610 +0.8 1.1 hypothetical protein compare
AO353_00250 +0.8 2.4 hypothetical protein compare
AO353_02265 +0.8 4.3 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific compare
AO353_19210 +0.8 4.0 hypothetical protein compare
AO353_02030 +0.8 2.2 hypothetical protein compare
AO353_12030 +0.8 2.4 hypothetical protein compare
AO353_27660 +0.8 2.4 leucyl/phenylalanyl-tRNA--protein transferase compare
AO353_11945 +0.8 0.7 4-oxalocrotonate tautomerase compare
AO353_00125 +0.8 1.8 hypothetical protein compare
AO353_15260 +0.8 3.4 stringent starvation protein A compare
AO353_27910 +0.8 4.5 porin compare
AO353_20265 +0.8 1.4 spore coat protein compare
AO353_27010 +0.8 1.7 alpha-ketoglutarate-dependent dioxygenase compare
AO353_20140 +0.8 2.2 hypothetical protein compare
AO353_10500 +0.8 2.4 acetylornithine aminotransferase compare
AO353_14030 +0.8 4.9 ABC transporter ATP-binding protein compare
AO353_11505 +0.7 4.3 succinate-semialdehyde dehydrogenase (EC 1.2.1.16) (from data) compare
AO353_05505 +0.7 3.7 hypothetical protein compare
AO353_12245 +0.7 2.2 hypothetical protein compare
AO353_12500 +0.7 0.7 shikimate kinase compare
AO353_06100 +0.7 1.1 thymidylate synthase compare
AO353_09150 +0.7 1.7 cytochrome C2 compare
AO353_12240 +0.7 2.9 histidine utilization repressor compare
AO353_02475 +0.7 3.1 hypothetical protein compare
AO353_23905 +0.7 2.0 GntR family transcriptional regulator compare
AO353_28890 +0.7 1.5 hypothetical protein compare
AO353_25385 +0.7 2.3 molybdenum cofactor biosynthesis protein MoaC compare
AO353_21160 +0.7 2.7 transposase compare
AO353_26525 +0.7 0.9 hypothetical protein compare
AO353_07685 +0.7 2.3 hypothetical protein compare
AO353_24760 +0.7 2.0 glutamine amidotransferase compare
AO353_27960 +0.7 3.7 SAM-dependent methyltransferase compare
AO353_26080 +0.7 1.9 hypothetical protein compare
AO353_00100 +0.7 2.0 hypothetical protein compare
AO353_13200 +0.7 5.1 exoribonuclease R compare
AO353_12020 +0.7 1.5 hypothetical protein compare
AO353_08465 +0.7 6.7 phosphoenolpyruvate-protein phosphotransferase compare
AO353_26635 +0.7 3.3 branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data) compare
AO353_23370 +0.7 1.8 cytochrome C compare
AO353_15640 +0.7 1.8 acetylornithine aminotransferase compare
AO353_18590 +0.7 3.8 AAA family ATPase compare
AO353_13465 +0.7 3.3 hypothetical protein compare
AO353_07910 +0.7 2.0 hypothetical protein compare
AO353_23775 +0.7 4.7 glycogen synthase compare
AO353_01105 +0.7 2.3 hypothetical protein compare
AO353_19545 +0.7 3.5 aldehyde-activating protein compare
AO353_23285 +0.7 1.5 hypothetical protein compare
AO353_09705 +0.7 1.4 hypothetical protein compare
AO353_20865 +0.7 1.4 cold-shock protein compare
AO353_04005 +0.7 1.9 hypothetical protein compare
AO353_27170 +0.7 3.8 hypothetical protein compare
AO353_26935 +0.7 0.9 LysR family transcriptional regulator compare
AO353_28220 +0.7 2.5 hydroxyacid dehydrogenase compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Glucose in Pseudomonas fluorescens FW300-N2E3

For carbon source D-Glucose across organisms