Experiment set15H19 for Pseudomonas stutzeri RCH2

Compare to:

LB with Nalidixic acid sodium salt 0.00390625 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_1315 -5.6 -1.6 hypothetical protein compare
Psest_2786 -4.3 -1.2 Domain of unknown function (DUF3597). compare
Psest_3247 -4.3 -2.1 Uncharacterized membrane protein compare
Psest_3226 -4.0 -1.1 Predicted membrane protein compare
Psest_0193 -3.9 -1.5 conserved hypothetical protein compare
Psest_2333 -3.6 -1.0 Protein of unknown function (DUF3359). compare
Psest_0466 -3.4 -2.4 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_4201 -3.3 -3.0 general secretion pathway protein F compare
Psest_3884 -3.2 -1.3 Signal transduction histidine kinase compare
Psest_4310 -3.1 -2.6 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_3042 -3.0 -1.2 Nitrate reductase cytochrome c-type subunit compare
Psest_3303 -3.0 -4.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3910 -2.9 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_4406 -2.8 -2.6 hypothetical protein compare
Psest_4298 -2.8 -1.1 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_3307 -2.8 -6.2 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0655 -2.8 -1.7 Chemotaxis signal transduction protein compare
Psest_2424 -2.7 -1.0 K+ transport systems, NAD-binding component compare
Psest_1522 -2.6 -2.2 hypothetical protein compare
Psest_3305 -2.6 -5.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_3306 -2.6 -3.9 conserved hypothetical integral membrane protein compare
Psest_1631 -2.5 -1.5 Uncharacterized conserved small protein compare
Psest_1870 -2.4 -0.9 Transcriptional regulators compare
Psest_3168 -2.4 -1.6 Molybdopterin converting factor, large subunit compare
Psest_3883 -2.4 -6.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3962 -2.4 -1.7 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_0310 -2.4 -2.8 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_1940 -2.4 -2.3 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_2545 -2.4 -2.4 recombination protein RecR compare
Psest_0212 -2.3 -2.5 exodeoxyribonuclease V, gamma subunit compare
Psest_3518 -2.3 -1.2 Transcriptional regulators compare
Psest_2736 -2.2 -2.9 Transposase and inactivated derivatives compare
Psest_0311 -2.2 -5.5 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_1162 -2.2 -2.2 Spermidine synthase compare
Psest_2809 -2.2 -2.2 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_3304 -2.2 -4.2 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_1284 -2.2 -4.5 exodeoxyribonuclease VII, large subunit compare
Psest_3816 -2.2 -1.1 DNA-directed RNA polymerase, omega subunit compare
Psest_1817 -2.2 -4.0 hypothetical protein compare
Psest_1837 -2.1 -6.0 Endoglucanase compare
Psest_2180 -2.1 -4.1 Curlin associated repeat. compare
Psest_1518 -2.1 -1.8 tRNA_Ser_CGA compare
Psest_3447 -2.1 -1.4 Uncharacterized MobA-related protein compare
Psest_0066 -2.0 -1.9 Protein of unknown function (DUF3060). compare
Psest_3270 -2.0 -2.1 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_2243 -2.0 -0.7 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_2146 -2.0 -3.5 Transcriptional regulator compare
Psest_2358 -1.9 -1.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2712 -1.9 -2.6 Surface lipoprotein compare
Psest_0457 -1.9 -2.8 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0243 -1.9 -1.5 hypothetical protein compare
Psest_3338 -1.9 -1.0 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_2000 -1.9 -3.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2110 -1.9 -1.8 hypothetical protein compare
Psest_0086 -1.8 -3.6 hypothetical protein compare
Psest_1604 -1.8 -2.7 Thiol-disulfide isomerase and thioredoxins compare
Psest_3389 -1.8 -2.3 hypothetical protein compare
Psest_4064 -1.8 -2.5 Lactate dehydrogenase and related dehydrogenases compare
Psest_0013 -1.8 -5.4 Lauroyl/myristoyl acyltransferase compare
Psest_3546 -1.8 -1.2 Phosphatidylglycerophosphatase A and related proteins compare
Psest_4042 -1.8 -2.3 hypothetical protein compare
Psest_0737 -1.8 -0.9 Cu(I)-responsive transcriptional regulator compare
Psest_2872 -1.8 -1.2 protein RecA compare
Psest_2253 -1.7 -1.6 small redox-active disulfide protein 2 compare
Psest_2020 -1.7 -2.4 Uncharacterized protein involved in purine metabolism compare
Psest_4142 -1.7 -1.6 hypothetical protein compare
Psest_0716 -1.7 -1.8 Protein of unknown function (DUF3094). compare
Psest_1782 -1.7 -1.3 Predicted transcriptional regulators compare
Psest_2637 -1.7 -0.9 putative methyltransferase, YaeB/AF_0241 family compare
Psest_1279 -1.7 -2.2 hypothetical protein compare
Psest_1840 -1.7 -11.0 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_2274 -1.7 -2.8 coenzyme PQQ biosynthesis protein A compare
Psest_0725 -1.6 -1.1 Negative regulator of beta-lactamase expression compare
Psest_3399 -1.6 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_2538 -1.6 -0.9 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_3832 -1.6 -1.8 hypothetical protein compare
Psest_1173 -1.6 -2.1 hypothetical protein compare
Psest_3990 -1.6 -5.9 PAP2 superfamily. compare
Psest_2726 -1.6 -1.1 Rhodanese-related sulfurtransferase compare
Psest_2304 -1.6 -0.6 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_4191 -1.6 -2.8 Transcriptional regulator compare
Psest_2047 -1.6 -1.9 Signal transduction histidine kinase compare
Psest_2798 -1.5 -1.7 Truncated hemoglobins compare
Psest_2145 -1.5 -4.0 RND family efflux transporter, MFP subunit compare
Psest_1562 -1.5 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_1306 -1.5 -1.3 hypothetical protein compare
Psest_3113 -1.5 -1.3 electron transport complex, RnfABCDGE type, B subunit compare
Psest_4219 -1.5 -2.1 DNA polymerase I compare
Psest_3476 -1.5 -1.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2016 -1.5 -2.3 hypothetical protein compare
Psest_1600 -1.5 -1.0 hypothetical protein compare
Psest_3174 -1.5 -8.3 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_3720 -1.5 -9.3 penicillin-binding protein, 1A family compare
Psest_1679 -1.5 -0.9 ribonuclease, Rne/Rng family compare
Psest_3092 -1.4 -1.4 ribonuclease III, bacterial compare
Psest_3494 -1.4 -2.2 hypothetical protein compare
Psest_2652 -1.4 -2.5 Protein of unknown function (DUF1653). compare
Psest_4197 -1.4 -3.4 general secretion pathway protein J compare
Psest_0855 -1.4 -4.3 NAD-dependent aldehyde dehydrogenases compare
Psest_1792 -1.4 -2.4 RND family efflux transporter, MFP subunit compare
Psest_3039 -1.4 -1.0 periplasmic nitrate reductase, NapE protein compare
Psest_2757 -1.4 -0.8 hypothetical protein compare
Psest_2646 -1.4 -1.4 SOS regulatory protein LexA compare
Psest_2308 -1.4 -0.6 Predicted Fe-S protein compare
Psest_3395 -1.4 -0.7 hypothetical protein compare
Psest_2066 -1.4 -0.8 ABC-type uncharacterized transport system, permease component compare
Psest_0277 -1.4 -1.1 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_3203 -1.4 -3.0 hypothetical protein compare
Psest_1087 -1.4 -0.9 uncharacterized peroxidase-related enzyme compare
Psest_3146 -1.4 -0.8 hypothetical protein compare
Psest_0988 -1.4 -1.7 Protein of unknown function (DUF2845). compare
Psest_4243 -1.3 -1.6 type VI secretion lipoprotein, VC_A0113 family compare
Psest_0368 -1.3 -2.0 Transcriptional regulator compare
Psest_2144 -1.3 -6.3 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family conserved
Psest_0708 -1.3 -0.9 outer membrane assembly lipoprotein YfiO compare
Psest_0078 -1.3 -0.9 hypothetical protein compare
Psest_3351 -1.3 -1.9 peptide chain release factor 3 compare
Psest_4132 -1.3 -3.2 alpha-ketoglutarate DNA-binding response regulator (mifR) (from data) compare
Psest_3882 -1.3 -6.8 Opacity protein and related surface antigens compare
Psest_0346 -1.3 -2.2 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_2282 -1.3 -1.2 Dihydroorotate dehydrogenase compare
Psest_0260 -1.3 -1.2 Cell division protein compare
Psest_4303 -1.3 -1.5 HEAT repeat. compare
Psest_0959 -1.3 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_0485 -1.2 -2.5 clan AA aspartic protease, TIGR02281 family compare
Psest_0846 -1.2 -1.8 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_2401 -1.2 -1.9 Uncharacterized conserved protein compare
Psest_1535 -1.2 -2.3 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
Psest_2605 -1.2 -1.3 transcriptional activator RfaH compare
Psest_1729 -1.2 -2.0 flagellar motor switch protein FliM compare
Psest_1026 -1.2 -2.1 Uncharacterized iron-regulated protein compare
Psest_0673 -1.2 -3.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_0191 -1.2 -0.7 PAS domain S-box compare
Psest_2513 -1.2 -1.6 Predicted membrane protein compare
Psest_1366 -1.2 -0.7 hypothetical protein compare
Psest_0702 -1.2 -2.5 Methyl-accepting chemotaxis protein compare
Psest_1149 -1.2 -1.8 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_1560 -1.2 -3.2 hypothetical protein compare
Psest_3496 -1.2 -1.1 Predicted metal-binding protein compare
Psest_3045 -1.2 -1.2 Cold shock proteins compare
Psest_0724 -1.2 -2.8 Deoxyinosine 3'endonuclease (endonuclease V) compare
Psest_3973 -1.2 -0.9 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_1692 -1.2 -4.0 conserved hypothetical protein, YceG family compare
Psest_0814 -1.2 -1.5 MoxR-like ATPases compare
Psest_0355 -1.2 -1.4 Glycine cleavage system regulatory protein compare
Psest_1594 -1.1 -3.0 Predicted metal-binding protein compare
Psest_1622 -1.1 -1.7 hypothetical protein compare
Psest_3488 -1.1 -2.2 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_2711 -1.1 -1.4 PilZ domain. compare
Psest_1367 -1.1 -2.5 hypothetical protein compare
Psest_2945 -1.1 -0.7 septum site-determining protein MinC compare
Psest_1371 -1.1 -2.5 hypothetical protein compare
Psest_0259 -1.1 -0.9 cell division ATP-binding protein FtsE compare
Psest_0837 -1.1 -1.1 Putative lipid carrier protein compare
Psest_0842 -1.1 -1.1 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_1814 -1.1 -6.2 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3456 -1.1 -1.3 RNA polymerase sigma factor, sigma-70 family compare
Psest_3756 -1.1 -2.1 hypothetical protein compare
Psest_2466 -1.1 -2.4 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2232 -1.1 -5.5 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_1990 -1.1 -1.3 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
Psest_2752 -1.1 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_0006 -1.1 -2.5 alkyl hydroperoxide reductase, F subunit compare
Psest_0601 -1.1 -1.5 hypothetical protein compare
Psest_2716 -1.1 -0.9 ABC-type multidrug transport system, ATPase component compare
Psest_4291 -1.1 -2.9 agmatine deiminase compare
Psest_1323 -1.1 -1.5 Hydroxypyruvate isomerase compare
Psest_1305 -1.1 -1.3 Heat shock protein compare
Psest_4147 -1.0 -2.6 Flagellar basal body L-ring protein compare
Psest_1896 -1.0 -1.4 ABC-type sugar transport system, periplasmic component compare
Psest_2334 -1.0 -5.7 Uncharacterized protein conserved in bacteria compare
Psest_3250 -1.0 -1.8 Rho termination factor, N-terminal domain. compare
Psest_1525 -1.0 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_0749 -1.0 -3.2 Transcriptional regulator compare
Psest_2067 -1.0 -0.7 ABC-type oligopeptide transport system, periplasmic component compare
Psest_2488 -1.0 -2.1 Predicted membrane protein compare
Psest_3100 -1.0 -2.1 RNA polymerase sigma factor RpoE compare
Psest_0097 -1.0 -1.4 phosphonates metabolism transcriptional regulator PhnF compare
Psest_3082 -1.0 -2.9 Predicted secreted protein compare
Psest_1238 -1.0 -2.6 Predicted membrane protein/domain compare
Psest_3495 -1.0 -2.3 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_1322 -1.0 -0.7 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_1913 -1.0 -1.8 Transcriptional regulator compare
Psest_2594 -1.0 -1.3 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2940 -1.0 -1.7 Predicted membrane protein compare
Psest_3850 -1.0 -0.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0459 -1.0 -4.4 Predicted carbamoyl transferase, NodU family compare
Psest_3022 -1.0 -2.2 Predicted membrane protein compare
Psest_2039 -1.0 -1.6 PQQ-dependent catabolism-associated CXXCW motif protein compare
Psest_1318 -1.0 -2.6 ABC-type phosphate/phosphonate transport system, permease component compare
Psest_3693 -1.0 -1.2 Glycosyltransferases involved in cell wall biogenesis compare
Psest_1395 -1.0 -1.2 Short-chain alcohol dehydrogenase of unknown specificity compare
Psest_3717 -1.0 -3.6 Tfp pilus assembly protein PilO compare
Psest_1819 -1.0 -5.6 Nucleoside-diphosphate-sugar epimerases compare
Psest_3767 -1.0 -2.6 tyrosine recombinase XerC compare
Psest_1850 -1.0 -2.4 Protein of unknown function (DUF2937). compare
Psest_0113 -1.0 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_1733 -1.0 -0.8 flagellar biosynthetic protein FliQ compare
Psest_1058 -1.0 -1.7 ribosomal-protein-alanine acetyltransferase compare
Psest_0257 -1.0 -1.9 Predicted Zn-dependent peptidases compare


Specific Phenotypes

For 4 genes in this experiment

For stress Nalidixic acid sodium salt in Pseudomonas stutzeri RCH2

For stress Nalidixic acid sodium salt across organisms